Thanks. Will give it a try. Mike On Thu, Feb 6, 2025 at 12:04 PM Dima Pasechnik <dimp...@gmail.com> wrote:
> Hi, > > few thing you ought to consider with your setup. > We presently don't really support installing Sage in a venv > (this is being worked on, but it's far from being ready for general use) > > Basically, Sage will create its own venv instead. > Then, we're not supporting Python 3.13 yet. > You can use 3.12 instead, then it will be used. > (and not built from sources, something which is broken on macOS a.t.m.) > > It seems you're using Homebrew, no? You certainly don't need to build > "patch" then, > just install a Homebrew patch. > > The way to use it with as many packages it has, not only non-python ones, > is to run > > source .homebrew-build-env # needed anyway > > and run > > ./configure ---enable-system-site-packages # site is for Python packages > in the env. of your python3 > > HTH > Dima > > > On Thursday, February 6, 2025 at 3:24:46 AM UTC-6 mwi...@gmail.com wrote: > >> Just discovered SageMath. Wonderful! Did a PhD thesis fifty(!) years >> ago using MACSYMA over a dialup connection to a TIP and the ARPANET :-) >> Great to see an alternative to Mathe$$$ica. >> Installing on old MacBook Pro 11,3 (mid-2013) running Sonoma 15.2 >> (patched with OCLP 2.2.0). Just upgraded my Python installation to 13.3.2, >> ran your source install with that in a venv. Fumbled along a bit, but made >> it through your configure steps. But when a did a make, it failed while >> trying to download your patch2.7.6 (See log snippet below). Complained >> about certificate issues. Notes: 1. I do have a GitHub account, but that >> probably wasn't involved. 2. I did a fresh install of Python 13.3.2 from >> the official site, INCLUDING the post instal script to update certificates, >> but ended up not using that image and installed another copy using BREW >> which put the binary in a more useful place wrt macOS and ZShell. >> TIA, >> Mike (excited to get SageMath running) >> PS: Presume my problem will be obvious to you, so only including a bit of >> the log. Can easily send more or try alternative steps. >> ------------------------- >> (pyvenv) mike@Mikes-MacBook-Pro-113 sage % make >> make -j4 build/make/Makefile --stop >> make[1]: `build/make/Makefile' is up to date. >> build/bin/sage-logger \ >> "cd build/make && ./install 'base-toolchain'" logs/install.log >> *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** >> ACLOCAL_PATH= >> >> CPATH=/usr/local/opt/primesieve/include:/usr/local/opt/bdw-gc/include:/usr/local/opt/libpng/include:/usr/local/opt/polymake/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/primesieve/include:/usr/local/opt/bdw-gc/include:/usr/local/opt/libpng/include:/usr/local/opt/polymake/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include >> CPPFLAGS=-I/usr/local/opt/openssl@3/include >> CVXOPT_SUITESPARSE_INC_DIR=/usr/local/include/suitesparse >> CVXOPT_SUITESPARSE_LIB_DIR=/usr/local/lib >> GNUARMEMB_TOOLCHAIN_PATH=/opt/gnuarmemb >> HOME=/Users/mike >> LANG=en_US.UTF-8 >> LDFLAGS=-L/usr/local/opt/openssl@3/lib >> >> LIBRARY_PATH=/usr/local/opt/primesieve/lib:/usr/local/opt/bdw-gc/lib:/usr/local/opt/libpng/lib:/usr/local/opt/polymake/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/primesieve/lib:/usr/local/opt/bdw-gc/lib:/usr/local/opt/libpng/lib:/usr/local/opt/polymake/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib >> LOGNAME=mike >> MAKE=make -j4 >> MAKEFLAGS= V=1 >> MAKELEVEL=1 >> >> MANPATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/share/man:/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/usr/share/man:/Applications/Xcode.app/Contents/Developer/usr/share/man:/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/share/man: >> MFLAGS= >> OPENSSL_ROOT_DIR=/usr/local/opt/openssl@3 >> >> PATH=/Users/mike/sage/sage/build/bin:/Users/mike/sage/sage/src/bin:/Users/mike/sage/sage/local/bin:/usr/local/opt/polymake/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/polymake/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/Users/mike/.pyenv/shims:/usr/local/bin/:/Users/mike/Py3.13.2/pyvenv/bin:/usr/local/opt/openssl@3/bin:/usr/local/sbin:/usr/local/opt/ccache/libexec:/Library/Frameworks/Python.framework/Versions/3.13/bin:/opt/local/bin:/opt/local/sbin:/Library/Frameworks/Python.framework/Versions/3.11/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/Apple/usr/bin:/Library/TeX/texbin:/Applications/Wireshark.app/Contents/MacOS:/Applications/VMware >> Fusion.app/Contents/Public:/usr/local/go/bin:/Applications/Visual Studio >> Code.app/Contents/Resources/app/bin:/Users/mike/gn:/Users/mike/go/bin >> >> PKG_CONFIG_PATH=/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/openssl@3 >> /lib/pkgconfig >> PWD=/Users/mike/sage/sage/build/make >> PYENV_ROOT=/Users/mike/.pyenv >> PYENV_SHELL=zsh >> PYTHONPATH=/Users/mike/sage/sage/local >> SAGE_ENV_CONFIG_SOURCED=1 >> SAGE_LOCAL=/Users/mike/sage/sage/local >> SAGE_LOGFILE=logs/install.log >> SAGE_LOGS=/Users/mike/sage/sage/logs/pkgs >> SAGE_NUM_THREADS=4 >> SAGE_NUM_THREADS_PARALLEL=4 >> >> SAGE_ORIG_PATH=/usr/local/opt/polymake/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/polymake/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/Users/mike/.pyenv/shims:/usr/local/bin/:/Users/mike/Py3.13.2/pyvenv/bin:/usr/local/opt/openssl@3/bin:/usr/local/sbin:/usr/local/opt/ccache/libexec:/Library/Frameworks/Python.framework/Versions/3.13/bin:/opt/local/bin:/opt/local/sbin:/Library/Frameworks/Python.framework/Versions/3.11/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/Apple/usr/bin:/Library/TeX/texbin:/Applications/Wireshark.app/Contents/MacOS:/Applications/VMware >> Fusion.app/Contents/Public:/usr/local/go/bin:/Applications/Visual Studio >> Code.app/Contents/Resources/app/bin:/Users/mike/gn:/Users/mike/go/bin >> SAGE_ORIG_PATH_SET=True >> SAGE_PKGCONFIG=/Users/mike/sage/sage/local/lib/pkgconfig >> SAGE_ROOT=/Users/mike/sage/sage >> SAGE_SHARE=/Users/mike/sage/sage/local/share >> SAGE_SRC=/Users/mike/sage/sage/src >> SHELL=/bin/zsh >> SHLVL=5 >> SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.IbtgscA1Gu/Listeners >> SU2_RUN=/usr/local/bin/ >> TERM=xterm-256color >> TERM_PROGRAM=Apple_Terminal >> TERM_PROGRAM_VERSION=455 >> TERM_SESSION_ID=3A754BB4-4919-4FBE-BDC5-909053096A6F >> TMPDIR=/var/folders/77/vchmhm_92yg2wyqntn6snjjh0000gp/T/ >> USER=mike >> VIRTUAL_ENV=/Users/mike/Py3.13.2/pyvenv >> VIRTUAL_ENV_PROMPT=pyvenv >> XPC_FLAGS=0x0 >> XPC_SERVICE_NAME=0 >> ZEPHYR_TOOLCHAIN_VARIANT=gnuarmemb >> ZPROFILETEST=was run >> _=/usr/bin/env >> __CFBundleIdentifier=com.apple.Terminal >> __CF_USER_TEXT_ENCODING=0x1F6:0x0:0x0 >> *********************************************** >> make --no-print-directory patch-SAGE_LOCAL-no-deps >> [patch-2.7.6] Attempting to download package patch-2.7.6.tar.gz from >> mirrors >> [patch-2.7.6] >> https://github.com/sagemath/sage/releases/download/10.6/patch-2.7.6.tar.gz >> [patch-2.7.6] >> [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx] >> [patch-2.7.6] ERROR [transfer|run:135]: [Errno socket error] [SSL: >> CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local >> issuer certificate (_ssl.c:992) >> [patch-2.7.6] >> https://github.com/sagemath/sage/releases/download/10.5/patch-2.7.6.tar.gz >> [patch-2.7.6] >> [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx] >> [patch-2.7.6] ERROR [transfer|run:135]: [Errno socket error] [SSL: >> CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local >> issuer certificate (_ssl.c:992) >> [patch-2.7.6] >> https://github.com/sagemath/sage/releases/download/10.4/patch-2.7.6.tar.gz >> [patch-2.7.6] >> [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx] >> [patch-2.7.6] ERROR [transfer|run:135]: [Errno socket error] [SSL: >> CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local >> issuer certificate (_ssl.c:992) >> [patch-2.7.6] Downloading the Sage mirror list >> [patch-2.7.6] CRITICAL [mirror_list|_refresh:238]: Downloading the mirror >> list failed, using cached version >> [patch-2.7.6] Attempting to download from >> https://ftp.gnu.org/gnu/patch/patch-2.7.6.tar.gz >> [patch-2.7.6] >> [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx] >> [patch-2.7.6] ERROR [transfer|run:135]: [Errno socket error] [SSL: >> CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local >> issuer certificate (_ssl.c:992) >> [patch-2.7.6] Traceback (most recent call last): >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/urllib/request.py", >> line 1787, in open >> [patch-2.7.6] return getattr(self, name)(url) >> [patch-2.7.6] ^^^^^^^^^^^^^^^^^^^^^^^^ >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/urllib/request.py", >> line 1996, in open_https >> [patch-2.7.6] return self._open_generic_http(self._https_connection, >> url, data) >> [patch-2.7.6] >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/urllib/request.py", >> line 1945, in _open_generic_http >> [patch-2.7.6] http_conn.request("GET", selector, headers=headers) >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", >> line 1282, in request >> [patch-2.7.6] self._send_request(method, url, body, headers, >> encode_chunked) >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", >> line 1328, in _send_request >> [patch-2.7.6] self.endheaders(body, encode_chunked=encode_chunked) >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", >> line 1277, in endheaders >> [patch-2.7.6] self._send_output(message_body, >> encode_chunked=encode_chunked) >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", >> line 1037, in _send_output >> [patch-2.7.6] self.send(msg) >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", >> line 975, in send >> [patch-2.7.6] self.connect() >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", >> line 1454, in connect >> [patch-2.7.6] self.sock = self._context.wrap_socket(self.sock, >> [patch-2.7.6] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py", >> line 517, in wrap_socket >> [patch-2.7.6] return self.sslsocket_class._create( >> [patch-2.7.6] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py", >> line 1075, in _create >> [patch-2.7.6] self.do_handshake() >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py", >> line 1346, in do_handshake >> [patch-2.7.6] self._sslobj.do_handshake() >> [patch-2.7.6] ssl.SSLCertVerificationError: [SSL: >> CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local >> issuer certificate (_ssl.c:992) >> [patch-2.7.6] >> [patch-2.7.6] The above exception was the direct cause of the following >> exception: >> [patch-2.7.6] >> [patch-2.7.6] Traceback (most recent call last): >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/tarball.py", line 185, >> in download >> [patch-2.7.6] Download(url, destination).run() >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/download/transfer.py", >> line 137, in run >> [patch-2.7.6] raise error >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/download/transfer.py", >> line 128, in run >> [patch-2.7.6] filename, info = opener.retrieve( >> [patch-2.7.6] ^^^^^^^^^^^^^^^^ >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/urllib/request.py", >> line 1821, in retrieve >> [patch-2.7.6] fp = self.open(url, data) >> [patch-2.7.6] ^^^^^^^^^^^^^^^^^^^^ >> [patch-2.7.6] File >> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/urllib/request.py", >> line 1793, in open >> [patch-2.7.6] raise OSError('socket error', msg) from msg >> [patch-2.7.6] OSError: [Errno socket error] [SSL: >> CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local >> issuer certificate (_ssl.c:992) >> [patch-2.7.6] >> [patch-2.7.6] During handling of the above exception, another exception >> occurred: >> [patch-2.7.6] >> [patch-2.7.6] Traceback (most recent call last): >> [patch-2.7.6] File "/Users/mike/sage/sage/build/bin/sage-package", line >> 40, in <module> >> [patch-2.7.6] run() >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/cmdline.py", line 538, >> in run >> [patch-2.7.6] app.download_cls(*args.package_class, >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/app.py", line 337, in >> download_cls >> [patch-2.7.6] pc.apply(download_with_args) >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/expand_class.py", line >> 126, in apply >> [patch-2.7.6] function(package_name, *args, **kwds) >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/app.py", line 329, in >> download_with_args >> [patch-2.7.6] self.download(package, allow_upstream=allow_upstream) >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/app.py", line 315, in >> download >> [patch-2.7.6] package.tarball.download(allow_upstream=allow_upstream) >> [patch-2.7.6] File >> "/Users/mike/sage/sage/build/bin/../sage_bootstrap/tarball.py", line 187, >> in download >> [patch-2.7.6] raise FileNotMirroredError('tarball does not exist on >> mirror network and neither at the upstream URL') >> [patch-2.7.6] sage_bootstrap.tarball.FileNotMirroredError: tarball does >> not exist on mirror network and neither at the upstream URL >> [patch-2.7.6] >> ************************************************************************ >> [patch-2.7.6] Error downloading tarball of patch >> [patch-2.7.6] >> ************************************************************************ >> [patch-2.7.6] Please email sage-devel ( >> http://groups.google.com/group/sage-devel) >> [patch-2.7.6] explaining the problem and including the log files >> [patch-2.7.6] /Users/mike/sage/sage/logs/pkgs/patch-2.7.6.log >> [patch-2.7.6] and >> [patch-2.7.6] /Users/mike/sage/sage/config.log >> [patch-2.7.6] Describe your computer, operating system, etc. >> [patch-2.7.6] >> ************************************************************************ >> make[2]: *** [patch-SAGE_LOCAL-no-deps] Error 1 >> make[1]: *** >> [/Users/mike/sage/sage/local/var/lib/sage/installed/patch-2.7.6] Error 2 >> *************************************************************** >> Error building Sage. >> >> The following package(s) may have failed to build (not necessarily >> during this run of 'make base-toolchain'): >> >> * package: patch-2.7.6 >> last build time: Feb 5 23:44 >> log file: /Users/mike/sage/sage/logs/pkgs/patch-2.7.6.log >> >> It is safe to delete any log files and build directories, but they >> contain information that is helpful for debugging build problems. >> WARNING: If you now run 'make' again, the build directory of the >> same version of the package will, by default, be deleted. Set the >> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >> >> make: *** [base-toolchain] Error 1 >> (pyvenv) mike@Mikes-MacBook-Pro-113 sage % >> > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion visit > https://groups.google.com/d/msgid/sage-support/ba2f264b-31ad-4d37-a1fa-6f1dfd00cc46n%40googlegroups.com > <https://groups.google.com/d/msgid/sage-support/ba2f264b-31ad-4d37-a1fa-6f1dfd00cc46n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion visit https://groups.google.com/d/msgid/sage-support/CAFpc19U%2BrugjckA4t0U1%3DSgCPw_xxgAgU8qucbFZ_gkdegdM9Q%40mail.gmail.com.
