Fresh clone of git repository of sage. I issued: cd sage ./bootstrap ./configure --no-create --no-recursion make
I've attached the log file for the scipy fail. -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/b65e6f4f-78b9-4e17-982d-a7839748dea4n%40googlegroups.com.
Attempting to download package scipy-1.11.2.tar.gz from mirrors https://mirrors.mit.edu/sage/spkg/upstream/scipy/scipy-1.11.2.tar.gz [......................................................................] scipy-1.11.2 ==================================================== Setting up build directory for scipy-1.11.2 Finished extraction Applying patches from ../patches... Applying ../patches/numpy-include.patch patching file scipy/spatial/setup.py Hunk #1 succeeded at 39 (offset -1 lines). Applying ../patches/tests_no_internet_dependency.patch patching file scipy/datasets/meson.build **************************************************** Host system: Linux fedora 6.4.15-200.fc38.x86_64 #1 SMP PREEMPT_DYNAMIC Thu Sep 7 00:25:01 UTC 2023 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/13/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,m2,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-libstdcxx-backtrace --with-libstdcxx-zoneinfo=/usr/share/zoneinfo --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-13.2.1-20230728/obj-x86_64-redhat-linux/isl-install --enable-offload-targets=nvptx-none --without-cuda-driver --enable-offload-defaulted --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux --with-build-config=bootstrap-lto --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.1 20230728 (Red Hat 13.2.1-1) (GCC) **************************************************** Package 'scipy' is currently not installed No legacy uninstaller found for 'scipy'; nothing to do Installing scipy-1.11.2 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 Processing /home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/var/tmp/sage/build/scipy-1.11.2/src Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) Preparing metadata (pyproject.toml): finished with status 'done' ERROR: Exception: Traceback (most recent call last): File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper status = run_func(*args) ^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper return func(self, options, args) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/commands/wheel.py", line 170, in run requirement_set = resolver.resolve(reqs, check_supported_wheels=True) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 73, in resolve collected = self.factory.collect_root_requirements(root_reqs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 491, in collect_root_requirements req = self._make_requirement_from_install_req( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 453, in _make_requirement_from_install_req cand = self._make_candidate_from_link( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link self._link_candidate_cache[link] = LinkCandidate( ^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__ super().__init__( File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__ self.dist = self._prepare() ^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare dist = self._prepare_distribution() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement return self._prepare_linked_requirement(req, parallel_builds) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement dist = _get_prepared_distribution( ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution abstract_dist.prepare_distribution_metadata( File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata self.req.prepare_metadata() File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/req/req_install.py", line 535, in prepare_metadata self.metadata_directory = generate_metadata( ^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/operations/build/metadata.py", line 35, in generate_metadata distinfo_dir = backend.prepare_metadata_for_build_wheel(metadata_dir) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/utils/misc.py", line 706, in prepare_metadata_for_build_wheel return super().prepare_metadata_for_build_wheel( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_vendor/pep517/wrappers.py", line 189, in prepare_metadata_for_build_wheel return self._call_hook('prepare_metadata_for_build_wheel', { ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_vendor/pep517/wrappers.py", line 319, in _call_hook raise BackendUnavailable(data.get('traceback', '')) pip._vendor.pep517.wrappers.BackendUnavailable: Traceback (most recent call last): File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 77, in _build_backend obj = import_module(mod_path) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "<frozen importlib._bootstrap>", line 1204, in _gcd_import File "<frozen importlib._bootstrap>", line 1176, in _find_and_load File "<frozen importlib._bootstrap>", line 1140, in _find_and_load_unlocked ModuleNotFoundError: No module named 'mesonpy' ******************************************************************************** Error building a wheel for scipy-1.11.2 ******************************************************************************** real 0m1.106s user 0m0.933s sys 0m0.173s ************************************************************************ Error installing package scipy-1.11.2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log files /home/packages/SOURCE/sage/logs/pkgs/scipy-1.11.2.log and /home/packages/SOURCE/sage/config.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/var/tmp/sage/build/scipy-1.11.2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/var/tmp/sage/build/scipy-1.11.2' && '/home/packages/SOURCE/sage/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
