CentOS Linux release 7.9.
sage v9.6
x86_64
./sage --version
/.ccs/common/pkg/sage-9.6/sage-9.6/src/bin/sage:
/.ccs/common/pkg/sage-9.6/sage-9.6/src/bin/sage-venv-config:
/doesnotexist/python3: bad interpreter: No such file or directory
SageMath version 9.6, Release Date: 2022-05-15
I see python3-3-10 ~sage-root/logs/pkgs/ython3-3-10.3.log
ImportError: libfflas.so.1: cannot open shared object file: No such file or
directory
Any assistance would be appreciated. I'm a first time builder of sage for
a small research staff.
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***************************************************************************
IPython post-mortem report
{'commit_hash': 'bf6aeb906d',
'commit_source': 'installation',
'default_encoding': 'utf-8',
'ipython_path':
'/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/IPython',
'ipython_version': '7.29.0',
'os_name': 'posix',
'platform': 'Linux-3.10.0-1160.53.1.el7.x86_64-x86_64-with-glibc2.17',
'sys_executable':
'/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/bin/python3',
'sys_platform': 'linux',
'sys_version': '3.10.3 (main, Feb 5 2023, 08:47:12) [GCC 8.5.0]'}
***************************************************************************
***************************************************************************
Crash traceback:
---------------------------------------------------------------------------
---------------------------------------------------------------------------
ImportErrorPython 3.10.3:
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/bin/python3
Mon Feb 6 15:20:10 2023
A problem occurred executing Python code. Here is the sequence of function
calls leading up to the error, with the most recent (innermost) call last.
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/bin/sage-ipython
in <module>
1
#!/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/bin/python3
2 # -*- coding: utf-8 -*-
3 """
4 Sage IPython startup script.
5 """
6
7 # Display startup banner. Do this before anything else to give the user
8 # early feedback that Sage is starting.
9 from sage.misc.banner import banner
10 banner()
11
12 from sage.repl.interpreter import SageTerminalApp
13
14 app = SageTerminalApp.instance()
---> 15 app.initialize()
global app.initialize = <bound method TerminalIPythonApp.initialize of
<sage.repl.interpreter.SageTerminalApp object at 0x7f94c0b13190>>
16 app.start()
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/traitlets/config/application.py
in inner(app=<sage.repl.interpreter.SageTerminalApp object>, *args=(),
**kwargs={})
73 else:
74 raise ValueError("Unsupported value for environment variable:
'TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR' is set to '%s' which is none of
{'0', '1', 'false', 'true', ''}."% _envvar )
75
76
77 def catch_config_error(method):
78 """Method decorator for catching invalid config
(Trait/ArgumentErrors) during init.
79
80 On a TraitError (generally caused by bad config), this will print
the trait's
81 message, and exit the app.
82
83 For use on init methods, to prevent invoking excepthook on invalid
input.
84 """
85 @functools.wraps(method)
86 def inner(app, *args, **kwargs):
87 try:
---> 88 return method(app, *args, **kwargs)
global method = undefined
app = <sage.repl.interpreter.SageTerminalApp object at 0x7f94c0b13190>
args = ()
kwargs = {}
89 except (TraitError, ArgumentError) as e:
90 app.log.fatal("Bad config encountered during
initialization: %s", e)
91 app.log.debug("Config at the time: %s", app.config)
92 app.exit(1)
93
94 return inner
95
96 class ApplicationError(Exception):
97 pass
98
99
100 class LevelFormatter(logging.Formatter):
101 """Formatter with additional `highlevel` record
102
103 This field is empty if log level is less than highlevel_limit,
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/IPython/terminal/ipapp.py
in initialize(self=<sage.repl.interpreter.SageTerminalApp object>, argv=None)
302
303 return super(TerminalIPythonApp, self).parse_command_line(argv)
304
305 @catch_config_error
306 def initialize(self, argv=None):
307 """Do actions after construct, but before starting the app."""
308 super(TerminalIPythonApp, self).initialize(argv)
309 if self.subapp is not None:
310 # don't bother initializing further, starting subapp
311 return
312 # print self.extra_args
313 if self.extra_args and not self.something_to_run:
314 self.file_to_run = self.extra_args[0]
315 self.init_path()
316 # create the shell
--> 317 self.init_shell()
self.init_shell = <bound method SageTerminalApp.init_shell of
<sage.repl.interpreter.SageTerminalApp object at 0x7f94c0b13190>>
318 # and draw the banner
319 self.init_banner()
320 # Now a variety of things that happen after the banner is
printed.
321 self.init_gui_pylab()
322 self.init_extensions()
323 self.init_code()
324
325 def init_shell(self):
326 """initialize the InteractiveShell instance"""
327 # Create an InteractiveShell instance.
328 # shell.display_banner should always be False for the terminal
329 # based app, because we call shell.show_banner() by hand below
330 # so the banner shows *before* all extension loading stuff.
331 self.shell = self.interactive_shell_class.instance(parent=self,
332 profile_dir=self.profile_dir,
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/repl/interpreter.py
in init_shell(self=<sage.repl.interpreter.SageTerminalApp object>)
772
773 # Load the %lprun extension if available
774 try:
775 import line_profiler
776 assert line_profiler # silence pyflakes
777 except ImportError:
778 pass
779 else:
780 self.extensions.append('line_profiler')
781
782 if self.shell.has_sage_extensions:
783 self.extensions.remove(SAGE_EXTENSION)
784
785 # load sage extension here to get a crash if
786 # something is wrong with the sage library
--> 787 self.shell.extension_manager.load_extension(SAGE_EXTENSION)
self.shell.extension_manager.load_extension = <bound method
ExtensionManager.load_extension of <IPython.core.extensions.ExtensionManager
object at 0x7f94b7f8f7c0>>
global SAGE_EXTENSION = 'sage'
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/IPython/core/extensions.py
in load_extension(self=<IPython.core.extensions.ExtensionManager object>,
module_str='sage')
72 if module_str in self.loaded:
73 return "already loaded"
74
75 from IPython.utils.syspathcontext import prepended_to_syspath
76
77 with self.shell.builtin_trap:
78 if module_str not in sys.modules:
79 with prepended_to_syspath(self.ipython_extension_dir):
80 mod = import_module(module_str)
81 if
mod.__file__.startswith(self.ipython_extension_dir):
82 print(("Loading extensions from {dir} is
deprecated. "
83 "We recommend managing extensions like
any "
84 "other Python packages, in
site-packages.").format(
85
dir=compress_user(self.ipython_extension_dir)))
86 mod = sys.modules[module_str]
---> 87 if self._call_load_ipython_extension(mod):
self._call_load_ipython_extension = <bound method
ExtensionManager._call_load_ipython_extension of
<IPython.core.extensions.ExtensionManager object at 0x7f94b7f8f7c0>>
mod = <module 'sage' from
'/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/__init__.py'>
88 self.loaded.add(module_str)
89 else:
90 return "no load function"
91
92 def unload_extension(self, module_str):
93 """Unload an IPython extension by its module name.
94
95 This function looks up the extension's name in ``sys.modules``
and
96 simply calls ``mod.unload_ipython_extension(self)``.
97
98 Returns the string "no unload function" if the extension
doesn't define
99 a function to unload itself, "not loaded" if the extension
isn't loaded,
100 otherwise None.
101 """
102 if module_str not in self.loaded:
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/IPython/core/extensions.py
in _call_load_ipython_extension(self=<IPython.core.extensions.ExtensionManager
object>, mod=<module 'sage' from
'/.ccs/common/pkg/sage-9.6/s...3/lib/python3.10/site-packages/sage/__init__.py'>)
119 """
120 from IPython.utils.syspathcontext import prepended_to_syspath
121
122 if (module_str in self.loaded) and (module_str in sys.modules):
123 self.unload_extension(module_str)
124 mod = sys.modules[module_str]
125 with prepended_to_syspath(self.ipython_extension_dir):
126 reload(mod)
127 if self._call_load_ipython_extension(mod):
128 self.loaded.add(module_str)
129 else:
130 self.load_extension(module_str)
131
132 def _call_load_ipython_extension(self, mod):
133 if hasattr(mod, 'load_ipython_extension'):
--> 134 mod.load_ipython_extension(self.shell)
mod.load_ipython_extension = <function load_ipython_extension at
0x7f94c08b0f70>
self.shell = <sage.repl.interpreter.SageTerminalInteractiveShell object
at 0x7f94bed5a1a0>
135 return True
136
137 def _call_unload_ipython_extension(self, mod):
138 if hasattr(mod, 'unload_ipython_extension'):
139 mod.unload_ipython_extension(self.shell)
140 return True
141
142 @undoc
143 def install_extension(self, url, filename=None):
144 """
145 Deprecated.
146 """
147 # Ensure the extension directory exists
148 raise DeprecationWarning(
149 '`install_extension` and the `install_ext` magic have been
deprecated since IPython 4.0'
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/repl/__init__.py
in
load_ipython_extension(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell
object>,))
1 # IPython calls this when "%load_ext sage.repl" is used.
2 # The Sage application loads it when starting up.
3 def load_ipython_extension(*args):
4 import sage.repl.ipython_extension
----> 5 sage.repl.ipython_extension.load_ipython_extension(*args)
sage.repl.ipython_extension.load_ipython_extension = <function
load_ipython_extension at 0x7f94b7d87c70>
args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at
0x7f94bed5a1a0>,)
6
7
8 # The above used to be in sage.__init__, allowing users to use
"%load_ext sage".
9 # But we are clearing out the __init__.py file as a preparation for
10 # making sage a native namespace package.
11 #
12 # So we make "%load_ext sage" work by monkey-patching the function
13 # into the sage package upon importing sage.repl.
14 import sage
15 sage.load_ipython_extension = load_ipython_extension
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/repl/ipython_extension.py
in wrapper(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell
object>,), **kwargs={})
591 ....: if work:
592 ....: return 'foo worked'
593 ....: raise RuntimeError("foo didn't work")
594 sage: foo(False)
595 Traceback (most recent call last):
596 ...
597 RuntimeError: foo didn't work
598 sage: foo(True)
599 'foo worked'
600 sage: foo(False)
601 sage: foo(True)
602 """
603 @wraps(func)
604 def wrapper(*args, **kwargs):
605 if not wrapper.has_run:
--> 606 result = func(*args, **kwargs)
result = undefined
global func = undefined
args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at
0x7f94bed5a1a0>,)
kwargs = {}
607 wrapper.has_run = True
608 return result
609 wrapper.has_run = False
610 return wrapper
611
612
613 @run_once
614 def load_ipython_extension(ip):
615 """
616 Load the extension in IPython.
617 """
618 # this modifies ip
619 SageCustomizations(shell=ip)
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/repl/ipython_extension.py
in
load_ipython_extension(ip=<sage.repl.interpreter.SageTerminalInteractiveShell
object>)
604 def wrapper(*args, **kwargs):
605 if not wrapper.has_run:
606 result = func(*args, **kwargs)
607 wrapper.has_run = True
608 return result
609 wrapper.has_run = False
610 return wrapper
611
612
613 @run_once
614 def load_ipython_extension(ip):
615 """
616 Load the extension in IPython.
617 """
618 # this modifies ip
--> 619 SageCustomizations(shell=ip)
global SageCustomizations = <class
'sage.repl.ipython_extension.SageCustomizations'>
global shell = undefined
ip = <sage.repl.interpreter.SageTerminalInteractiveShell object at
0x7f94bed5a1a0>
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/repl/ipython_extension.py
in __init__(self=<sage.repl.ipython_extension.SageCustomizations object>,
shell=<sage.repl.interpreter.SageTerminalInteractiveShell object>)
419 def __init__(self, shell=None):
420 """
421 Initialize the Sage plugin.
422 """
423 self.shell = shell
424
425 self.auto_magics = SageMagics(shell)
426 self.shell.register_magics(self.auto_magics)
427
428 import sage.misc.edit_module as edit_module
429 self.shell.set_hook('editor', edit_module.edit_devel)
430
431 self.init_inspector()
432 self.init_line_transforms()
433
--> 434 import sage.all # until sage's import hell is fixed
sage.all = undefined
435
436 self.shell.verbose_quit = True
437
438 self.register_interface_magics()
439
440 if SAGE_IMPORTALL == 'yes':
441 self.init_environment()
442
443 def register_interface_magics(self):
444 """
445 Register magics for each of the Sage interfaces
446 """
447 from sage.repl.interface_magic import InterfaceMagic
448 InterfaceMagic.register_all(self.shell)
449
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/all.py
in <module>
123
124 from sage.misc.sh import sh
125
126 from sage.libs.all import *
127 from sage.data_structures.all import *
128 from sage.doctest.all import *
129
130 from sage.structure.all import *
131 from sage.rings.all import *
132 from sage.arith.all import *
133 from sage.matrix.all import *
134
135 from sage.symbolic.all import *
136 from sage.modules.all import *
137 from sage.monoids.all import *
--> 138 from sage.algebras.all import *
global sage.algebras.all = undefined
139 from sage.modular.all import *
140 from sage.sat.all import *
141 from sage.schemes.all import *
142 from sage.graphs.all import *
143 from sage.groups.all import *
144 from sage.arith.power import generic_power as power
145 from sage.databases.all import *
146 from sage.categories.all import *
147 from sage.sets.all import *
148 from sage.probability.all import *
149 from sage.interfaces.all import *
150
151 from sage.functions.all import *
152 from sage.calculus.all import *
153
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/algebras/all.py
in <module>
6 # Copyright (C) 2005 William Stein <[email protected]>
7 #
8 # Distributed under the terms of the GNU General Public License (GPL)
9 #
10 # This code is distributed in the hope that it will be useful,
11 # but WITHOUT ANY WARRANTY; without even the implied warranty of
12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
13 # General Public License for more details.
14 #
15 # The full text of the GPL is available at:
16 #
17 # http://www.gnu.org/licenses/
18
#*****************************************************************************
19 from sage.misc.lazy_import import lazy_import
20
---> 21 import sage.algebras.catalog as algebras
global sage.algebras.catalog = undefined
global algebras = undefined
22
23 from .quantum_groups.all import *
24 from .quatalg.all import *
25
26 # Algebra base classes
27 from .algebra import Algebra
28 from .free_algebra import FreeAlgebra
29 from .free_algebra_quotient import FreeAlgebraQuotient
30
31 from .steenrod.all import *
32 from .lie_algebras.all import *
33 from .quantum_groups.all import *
34 from .lie_conformal_algebras.all import *
35
36 from .finite_dimensional_algebras.all import FiniteDimensionalAlgebra
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/algebras/catalog.py
in <module>
65 - :class:`algebras.RationalCherednik
66 <sage.algebras.rational_cherednik_algebra.RationalCherednikAlgebra>`
67 - :class:`algebras.Schur <sage.algebras.schur_algebra.SchurAlgebra>`
68 - :class:`algebras.Shuffle
<sage.algebras.shuffle_algebra.ShuffleAlgebra>`
69 - :class:`algebras.Steenrod
70 <sage.algebras.steenrod.steenrod_algebra.SteenrodAlgebra>`
71 - :class:`algebras.TemperleyLieb
<sage.combinat.diagram_algebras.TemperleyLiebAlgebra>`
72 - :class:`algebras.WQSym
<sage.combinat.chas.wqsym.WordQuasiSymmetricFunctions>`
73 - :class:`algebras.Yangian <sage.algebras.yangian.Yangian>`
74 - :class:`algebras.YokonumaHecke
75 <sage.algebras.yokonuma_hecke_algebra.YokonumaHeckeAlgebra>`
76 - :class:`algebras.Tensor <sage.algebras.tensor_algebra.TensorAlgebra>`
77 """
78
79 from sage.algebras.free_algebra import FreeAlgebra as Free
---> 80 from sage.algebras.quatalg.quaternion_algebra import QuaternionAlgebra
as Quaternion
global sage.algebras.quatalg.quaternion_algebra = undefined
global QuaternionAlgebra = undefined
global Quaternion = undefined
81 from sage.algebras.steenrod.steenrod_algebra import SteenrodAlgebra as
Steenrod
82 from
sage.algebras.finite_dimensional_algebras.finite_dimensional_algebra import
FiniteDimensionalAlgebra as FiniteDimensional
83 from sage.algebras.group_algebra import GroupAlgebra as Group
84 from sage.algebras.clifford_algebra import CliffordAlgebra as Clifford
85 from sage.algebras.clifford_algebra import ExteriorAlgebra as Exterior
86 from sage.algebras.weyl_algebra import DifferentialWeylAlgebra as
DifferentialWeyl
87 from sage.algebras.lie_algebras.lie_algebra import LieAlgebra as Lie
88
89 from sage.misc.lazy_import import lazy_import
90 lazy_import('sage.algebras.iwahori_hecke_algebra',
'IwahoriHeckeAlgebra', 'IwahoriHecke')
91 lazy_import('sage.algebras.nil_coxeter_algebra', 'NilCoxeterAlgebra',
'NilCoxeter')
92 lazy_import('sage.algebras.free_zinbiel_algebra', 'FreeZinbielAlgebra',
'FreeZinbiel')
93 lazy_import('sage.algebras.askey_wilson', 'AskeyWilsonAlgebra',
'AskeyWilson')
94 lazy_import('sage.algebras.hall_algebra', 'HallAlgebra', 'Hall')
95 lazy_import('sage.algebras.jordan_algebra', 'JordanAlgebra', 'Jordan')
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/algebras/quatalg/quaternion_algebra.py
in <module>
53 from sage.matrix.matrix_space import MatrixSpace
54 from sage.matrix.constructor import diagonal_matrix, matrix
55 from sage.structure.sequence import Sequence
56 from sage.structure.element import is_RingElement
57 from sage.structure.factory import UniqueFactory
58 from sage.modules.free_module import FreeModule
59 from sage.modules.free_module_element import vector
60
61 from operator import itemgetter
62
63 from .quaternion_algebra_element import (
64 QuaternionAlgebraElement_abstract,
65 QuaternionAlgebraElement_generic,
66 QuaternionAlgebraElement_rational_field,
67 QuaternionAlgebraElement_number_field)
---> 68 from . import quaternion_algebra_cython
global quaternion_algebra_cython = undefined
69
70 from sage.modular.modsym.p1list import P1List
71
72 from sage.misc.cachefunc import cached_method
73
74 from sage.categories.algebras import Algebras
75
76 ########################################################
77 # Constructor
78 ########################################################
79
80
81 class QuaternionAlgebraFactory(UniqueFactory):
82 r"""
83 Construct a quaternion algebra.
/.ccs/common/pkg/sage-9.6/sage-9.6/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/algebras/quatalg/quaternion_algebra_cython.pyx
in init sage.algebras.quatalg.quaternion_algebra_cython
(build/cythonized/sage/algebras/quatalg/quaternion_algebra_cython.cpp:6330)()
----> 1 # distutils: language = c++
2 # distutils: libraries = gmp m NTL_LIBRARIES
3 # distutils: extra_compile_args = NTL_CFLAGS
4 # distutils: include_dirs = NTL_INCDIR
5 # distutils: library_dirs = NTL_LIBDIR
6 # distutils: extra_link_args = NTL_LIBEXTRA
7 """
8 Optimized Cython code needed by quaternion algebras
9
10 This is a collection of miscellaneous routines that are in Cython for
11 speed purposes and are used by the quaternion algebra code. For
12 example, there are functions for quickly constructing an n x 4 matrix
13 from a list of n rational quaternions.
14
15 AUTHORS:
16
17 - William Stein
18
19 """
20
21 #
****************************************************************************
22 # Copyright (C) 2009 William Stein <[email protected]>
23 #
24 # This program is free software: you can redistribute it and/or modify
25 # it under the terms of the GNU General Public License as published by
26 # the Free Software Foundation, either version 2 of the License, or
27 # (at your option) any later version.
28 # http://www.gnu.org/licenses/
29 #
****************************************************************************
30
31 from sage.rings.integer_ring import ZZ
ImportError: libfflas.so.1: cannot open shared object file: No such file or
directory
***************************************************************************
History of session input:
*** Last line of input (may not be in above history):
