Now, at the *end* of a Sage session, I get :
sage: quit Exiting Sage (CPU time 0m5.63s, Wall time 97m53.10s). ------------------------------------------------------------------------ /usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/cysignals/signals.cpython-39-x86_64-linux-gnu.so(+0x7e1b)[0x7fe106cabe1b] /usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/cysignals/signals.cpython-39-x86_64-linux-gnu.so(+0x7ec9)[0x7fe106cabec9] /usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/cysignals/signals.cpython-39-x86_64-linux-gnu.so(+0xafa3)[0x7fe106caefa3] /lib/x86_64-linux-gnu/libpthread.so.0(+0x138e0)[0x7fe1099888e0] /usr/lib/x86_64-linux-gnu/libflint-2.8.2.so(_fmpz_cleanup_mpz_content+0x6a)[0x7fe0b651279a] /usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/libs/flint/flint.cpython-39-x86_64-linux-gnu.so(+0x2e29)[0x7fe0a2a71e29] python3[0x52326b] python3(_PyEval_EvalFrameDefault+0x53d1)[0x5149c1] python3[0x50e2d1] python3(_PyFunction_Vectorcall+0x3db)[0x525f3b] python3(_PyEval_EvalFrameDefault+0x53d1)[0x5149c1] python3[0x50e2d1] python3(_PyFunction_Vectorcall+0x3db)[0x525f3b] python3[0x63a580] python3[0x6287ad] python3(Py_FinalizeEx+0x4d)[0x62841d] python3(Py_RunMain+0x170)[0x61eff0] python3(Py_BytesMain+0x29)[0x606df9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7fe1097d5e4a] python3(_start+0x2a)[0x606cfa] ------------------------------------------------------------------------ Attaching gdb to process id 174166. Cannot find gdb installed GDB is not installed. Install gdb for enhanced tracebacks. ------------------------------------------------------------------------ Unhandled SIGSEGV: A segmentation fault occurred. This probably occurred because a *compiled* module has a bug in it and is not properly wrapped with sig_on(), sig_off(). Python will now terminate. ------------------------------------------------------------------------ Segmentation fault Both from a terminal session and from emacs‘s sage_shell_mode. I don’t see anything when I stop-and-close a Jupyter notebook. Thoughts ? Le vendredi 10 décembre 2021 à 16:39:53 UTC+1, Emmanuel Charpentier a écrit : > make giac-clean && make did it ! > > (*Alla cinese*) 10^4 thanks ! > > Le vendredi 10 décembre 2021 à 11:56:00 UTC+1, dim...@gmail.com a écrit : > >> Everything that depends on updated Debian libs has to be rebuilt - looks >> like >> >> make giac-clean >> >> is needed too, for sure. >> >> On Fri, Dec 10, 2021 at 10:36 AM Emmanuel Charpentier >> <emanuel.c...@gmail.com> wrote: >> > >> > >> > >> > Le vendredi 10 décembre 2021 à 01:04:33 UTC+1, Matthias Koeppe a écrit >> : >> >> >> >> "make sagelib-clean" will fix this >> > >> > >> > Nope. `make sagelib-clean` succeeds, but the following `make` fails at >> documentation ; attempting `make doc-clean && make also fails, *with the >> very same error*... : >> > >> > ``` >> > [sagemath_doc_html-none] cd /usr/local/sage-9 && ./sage --docbuild >> --no-pdf-links reference/libs inventory --no-prune-empty-dirs >> > [sagemath_doc_html-none] Warning: Could not import sage.libs.giac >> libgsl.so.25: cannot open shared object file: No such file or directory >> > [sagemath_doc_html-none] >> /usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__init__.py:1066: >> >> DeprecationWarning: the module sage.libs.ratpoints is deprecated; use >> pari.ellratpoints or pari.hyperellratpoints instead >> > [sagemath_doc_html-none] See http://trac.sagemath.org/24531 for >> details. >> > [sagemath_doc_html-none] __import__(module_name) >> > [sagemath_doc_html-none] [libs ] building [inventory]: targets for 39 >> source files that are out of date >> > [sagemath_doc_html-none] [libs ] updating environment: [new config] 39 >> added, 0 changed, 0 removed >> > [sagemath_doc_html-none] [libs ] WARNING: autodoc: failed to import >> module 'giac' from module 'sage.libs'; the following exception was raised: >> > [sagemath_doc_html-none] [libs ] libgsl.so.25: cannot open shared >> object file: No such file or directory >> > [sagemath_doc_html-none] [libs ] The inventory files are in >> local/share/doc/sage/inventory/en/reference/libs. >> > [sagemath_doc_html-none] Error building the documentation. >> > [sagemath_doc_html-none] Traceback (most recent call last): >> > [sagemath_doc_html-none] File "/usr/lib/python3.9/runpy.py", line 197, >> in _run_module_as_main >> > [sagemath_doc_html-none] return _run_code(code, main_globals, None, >> > [sagemath_doc_html-none] File "/usr/lib/python3.9/runpy.py", line 87, >> in _run_code >> > [sagemath_doc_html-none] exec(code, run_globals) >> > [sagemath_doc_html-none] File >> "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__main__.py", >> >> line 2, in <module> >> > [sagemath_doc_html-none] main() >> > [sagemath_doc_html-none] File >> "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__init__.py", >> >> line 1815, in main >> > [sagemath_doc_html-none] builder() >> > [sagemath_doc_html-none] File >> "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__init__.py", >> >> line 822, in _wrapper >> > [sagemath_doc_html-none] getattr(DocBuilder, build_type)(self, *args, >> **kwds) >> > [sagemath_doc_html-none] File >> "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__init__.py", >> >> line 133, in f >> > [sagemath_doc_html-none] runsphinx() >> > [sagemath_doc_html-none] File >> "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/sphinxbuild.py", >> >> line 323, in runsphinx >> > [sagemath_doc_html-none] sys.stderr.raise_errors() >> > [sagemath_doc_html-none] File >> "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/sphinxbuild.py", >> >> line 258, in raise_errors >> > [sagemath_doc_html-none] raise OSError(self._error) >> > [sagemath_doc_html-none] OSError: WARNING: autodoc: failed to import >> module 'giac' from module 'sage.libs'; the following exception was raised: >> > [sagemath_doc_html-none] >> > [sagemath_doc_html-none] Note: incremental documentation builds >> sometimes cause spurious >> > [sagemath_doc_html-none] error messages. To be certain that these are >> real errors, run >> > [sagemath_doc_html-none] "make doc-clean" first and try again. >> > [sagemath_doc_html-none] make[6]: *** [Makefile:20 : >> doc-inventory--reference-libs] Erreur 1 >> > [sagemath_doc_html-none] make[5]: *** [Makefile:37 : >> doc-inventory-reference] Erreur 2 >> > make[4]: *** [Makefile:2789 : sagemath_doc_html-SAGE_DOCS-no-deps] >> Erreur 2 >> > make[3]: *** [Makefile:2789 : >> /usr/local/sage-9/local/var/lib/sage/installed/sagemath_doc_html-none] >> Erreur 2 >> > make[2]: *** [Makefile:2332 : all-start] Erreur 2 >> > make[2] : on quitte le répertoire « /usr/local/sage-9/build/make » >> > >> > real 18m33,136s >> > user 29m24,260s >> > sys 1m6,712s >> > *************************************************************** >> > Error building Sage. >> > >> > The following package(s) may have failed to build (not necessarily >> > during this run of 'make all-start'): >> > >> > It is safe to delete any log files and build directories, but they >> > contain information that is helpful for debugging build problems. >> > WARNING: If you now run 'make' again, the build directory of the >> > same version of the package will, by default, be deleted. Set the >> > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >> > >> > make[1]: *** [Makefile:39 : all-start] Erreur 1 >> > make[1] : on quitte le répertoire « /usr/local/sage-9 » >> > make: *** [Makefile:13 : all] Erreur 2 >> > ``` >> > >> > Suggestions ? >> > >> > >> >> >> >> On Thursday, December 9, 2021 at 12:18:02 PM UTC-8 Emmanuel >> Charpentier wrote: >> >>> >> >>> A recent upgrade of Debian testing seems to have broken Sage, which >> does not find libgsl.so.25 Crash report attached. >> >>> >> >>> An attempt at make -b also fails (see attached install.log). >> >>> >> >>> The worse is : >> >>> >> >>> charpent@zen-book-flip:/usr/local/sage-9$ locate libgsl.so >> >>> >> >>> /usr/lib/x86_64-linux-gnu/libgsl.so >> >>> >> >>> /usr/lib/x86_64-linux-gnu/libgsl.so.25 >> >>> >> >>> /usr/lib/x86_64-linux-gnu/libgsl.so.25.0.0 >> >>> >> >>> charpent@zen-book-flip:/usr/local/sage-9$ dpkg -l "*libgsl*" >> >>> >> >>> Souhait=inconnU/Installé/suppRimé/Purgé/H=à garder >> >>> >> >>> | >> État=Non/Installé/fichier-Config/dépaqUeté/échec-conFig/H=semi-installé/W=att> >> >> >> >>> >> >>> |/ Err?=(aucune)/besoin Réinstallation (État,Err: majuscule=mauvais) >> >>> >> >>> ||/ Nom Version Architecture Description >> >>> >> >>> >> +++-==================-============-============-==============================> >> >> >> >>> >> >>> ii libgsl-dev 2.7.1+dfsg-3 amd64 GNU Scientific Library (GSL) -> >> >>> >> >>> un libgsl0 <aucune> <aucune> (aucune description n'est disp> >> >>> >> >>> un libgsl0-dev <aucune> <aucune> (aucune description n'est disp> >> >>> >> >>> un libgsl0ldbl <aucune> <aucune> (aucune description n'est disp> >> >>> >> >>> un libgsl2 <aucune> <aucune> (aucune description n'est disp> >> >>> >> >>> un libgsl23 <aucune> <aucune> (aucune description n'est disp> >> >>> >> >>> ii libgsl27:amd64 2.7.1+dfsg-3 amd64 GNU Scientific Library (GSL) -> >> >>> >> >>> ii libgslcblas0:amd64 2.7.1+dfsg-3 amd64 GNU Scientific Library (GSL) >> -> >> >>> >> >>> >> >>> I'm a bit at loss... >> >>> >> > -- >> > You received this message because you are subscribed to the Google >> Groups "sage-support" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an email to sage-support...@googlegroups.com. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-support/f93cf900-d04f-4a70-9222-ccd0712c4bfan%40googlegroups.com. >> >> >> > -- You received this message because you are subscribed to the Google Groups "sage-support" group. 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