Estimado Enrique,
If you want to compile anything, you should be using development
docker image, that is
sagemath/sagemath-dev
(you can tag if 8.8 if you wish). Be careful that the image is
twice bigger. See the documentation at
https://hub.docker.com/u/sagemath/sagemath
Vincent
Le 30/10/2019 à 09:11, Enrique Artal a écrit :
Cher Vincent,
I hope to add now enough additional info. I am using mybinder.org (I did
not find another address); my Dockerfile is adapted from a file in
sage-binder-env:
FROM sagemath/sagemath:8.8
USER root
RUN apt-get -qq update \
&& apt-get -qq install -y --no-install-recommends gcc build-essential make \
&& apt-get -qq clean
USER sage
RUN sage -i gap_packages
# Make sure the contents of the repository is in ${HOME}
COPY --chown=sage:sage . ${HOME} In the original file the version was 8.6;
8.9 did not work. The whole log is:
Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2dockerarcwd43e'...
HEAD is now at a95a550 Update Dockerfile
Using DockerBuildPack builder
Step 1/6 : FROM sagemath/sagemath:8.8
---> 8826a965812be...
Step 2/6 : USER root
---> Running in 5de1f0b3cfbb
Removing intermediate container 5de1f0b3cfbb
---> c39c95bbdcff
Step 3/6 : RUN apt-get -qq update && apt-get -qq install -y
--no-install-recommends gcc build-essential make && apt-get -qq clean
---> Running in fe5e1e365ff8
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libgdbm3:amd64.
(Reading database ... 7609 files and directories currently installed.)
Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ...
Unpacking libgdbm3:amd64 (1.8.3-13.1) ...
Selecting previously unselected package perl-modules-5.22.
Preparing to unpack .../perl-modules-5.22_5.22.1-9ubuntu0.6_all.deb ...
Unpacking perl-modules-5.22 (5.22.1-9ubuntu0.6) ...
Preparing to unpack .../libbz2-1.0_1.0.6-8ubuntu0.2_amd64.deb ...
Unpacking libbz2-1.0:amd64 (1.0.6-8ubuntu0.2) over (1.0.6-8) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Setting up libbz2-1.0:amd64 (1.0.6-8ubuntu0.2) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Selecting previously unselected package libperl5.22:amd64.
(Reading database ... 8846 files and directories currently installed.)
Preparing to unpack .../libperl5.22_5.22.1-9ubuntu0.6_amd64.deb ...
Unpacking libperl5.22:amd64 (5.22.1-9ubuntu0.6) ...
Selecting previously unselected package perl.
Preparing to unpack .../perl_5.22.1-9ubuntu0.6_amd64.deb ...
Unpacking perl (5.22.1-9ubuntu0.6) ...
Selecting previously unselected package bzip2.
Preparing to unpack .../bzip2_1.0.6-8ubuntu0.2_amd64.deb ...
Unpacking bzip2 (1.0.6-8ubuntu0.2) ...
Selecting previously unselected package make.
Preparing to unpack .../archives/make_4.1-6_amd64.deb ...
Unpacking make (4.1-6) ...
Selecting previously unselected package libdpkg-perl.
Preparing to unpack .../libdpkg-perl_1.18.4ubuntu1.6_all.deb ...
Unpacking libdpkg-perl (1.18.4ubuntu1.6) ...
Selecting previously unselected package xz-utils.
Preparing to unpack .../xz-utils_5.1.1alpha+20120614-2ubuntu2_amd64.deb ...
Unpacking xz-utils (5.1.1alpha+20120614-2ubuntu2) ...
Selecting previously unselected package patch.
Preparing to unpack .../patch_2.7.5-1ubuntu0.16.04.2_amd64.deb ...
Unpacking patch (2.7.5-1ubuntu0.16.04.2) ...
Selecting previously unselected package dpkg-dev.
Preparing to unpack .../dpkg-dev_1.18.4ubuntu1.6_all.deb ...
Unpacking dpkg-dev (1.18.4ubuntu1.6) ...
Selecting previously unselected package build-essential.
Preparing to unpack .../build-essential_12.1ubuntu2_amd64.deb ...
Unpacking build-essential (12.1ubuntu2) ...
Setting up libgdbm3:amd64 (1.8.3-13.1) ...
Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ...
Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ...
Setting up perl (5.22.1-9ubuntu0.6) ...
update-alternatives: using /usr/bin/prename to provide /usr/bin/rename
(rename) in auto mode
Setting up bzip2 (1.0.6-8ubuntu0.2) ...
Setting up make (4.1-6) ...
Setting up libdpkg-perl (1.18.4ubuntu1.6) ...
Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ...
update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in
auto mode
Setting up patch (2.7.5-1ubuntu0.16.04.2) ...
Setting up dpkg-dev (1.18.4ubuntu1.6) ...
Setting up build-essential (12.1ubuntu2) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Removing intermediate container fe5e1e365ff8
---> fa9dc2999b1d
Step 4/6 : USER sage
---> Running in d86e77e74948
Removing intermediate container d86e77e74948
---> 6535d64a4eae
Step 5/6 : RUN sage -i gap_packages
---> Running in e012d50d35ae
make: *** No rule to make target 'all-toolchain'. Stop.
Removing intermediate container e012d50d35ae
The command '/bin/sh -c sage -i gap_packages' returned a non-zero code: 2
I think the non-zero code is variable. Thanks, Enrique.
El miércoles, 30 de octubre de 2019, 4:44:27 (UTC+1), vdelecroix escribió:
Dear Enrique,
It would be helpful to have the complete error message and the log
of the failed build. And if you know how to do that, you can open
a trac ticket.
Also, it would be nice to have docker images for Sage with most (if
not all) optional packages installed.
Vincent
Le 29/10/2019 à 05:13, Enrique Artal a écrit :
I want to make available some of my notebooks in binder. I found very
useful sage-binder-env but I ran into problems in a case where I needed
an
optional package, namely gap_packages. As stated I installed make
package
using the Dockerfile but the installation stops with an error in make
all-toolchain. I guess I need to install more packages but I do not know
which ones. Best regards, Enrique.
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