Sage requires that you build it as an unprivileged user.
On Thursday, January 1, 2015 10:13:04 PM UTC+1, Robert McBroom wrote: > > sage -upgrade from 6.2 error on Fedora 19. Running in a root window > upgrade terminates with a permission error > > Target: x86_64-redhat-linux > Configured with: ../configure --prefix=/usr --mandir=/usr/share/man > --infodir=/usr/share/info --with-bugurl= > http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared > --enable-threads=posix --enable-checking=release --with-system-zlib > --enable-__cxa_atexit --disable-libunwind-exceptions > --enable-gnu-unique-object --enable-linker-build-id > --with-linker-hash-style=gnu > --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto > --enable-plugin --enable-initfini-array --enable-java-awt=gtk > --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre > --enable-libgcj-multifile --enable-java-maintainer-mode > --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib > --with-isl=/builddir/build/BUILD/gcc-4.8.3-20140911/obj-x86_64-redhat-linux/isl-install > > --with-cloog=/builddir/build/BUILD/gcc-4.8.3-20140911/obj-x86_64-redhat-linux/cloog-install > > --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux > Thread model: posix > gcc version 4.8.3 20140911 (Red Hat 4.8.3-7) (GCC) > **************************************************** > sys:1: RuntimeWarning: not adding directory > '/usr/local/sage-6.2-x86_64-Linux/local/var/tmp/sage/build/atlas-3.10.2' to > sys.path since it's not owned by a trusted user. > Untrusted users could put files in this directory which might then be > imported by your Python code. As a general precaution from similar > exploits, you should not execute Python code from this directory > Traceback (most recent call last): > File "./spkg-install", line 15, in <module> > from configuration import conf, cp, ln, which, try_run, edit_in_place > ImportError: No module named configuration > > real 0m0.026s > user 0m0.016s > sys 0m0.009s > ************************************************************************ > Error installing package atlas-3.10.2 > ************************************************************************ > Please email sage-devel (http://groups.google.com/group/sage-devel) > explaining the problem and including the relevant part of the log file > /usr/local/sage-6.2-x86_64-Linux/logs/pkgs/atlas-3.10.2.log > Describe your computer, operating system, etc. > If you want to try to fix the problem yourself, *don't* just cd to > /usr/local/sage-6.2-x86_64-Linux/local/var/tmp/sage/build/atlas-3.10.2 and > type 'make' or whatever is appropriate. > Instead, the following commands setup all environment variables > correctly and load a subshell for you to debug the error: > (cd > '/usr/local/sage-6.2-x86_64-Linux/local/var/tmp/sage/build/atlas-3.10.2' && > '/usr/local/sage-6.2-x86_64-Linux/sage' --sh) > When you are done debugging, you can type "exit" to leave the subshell. > ************************************************************************ > make[2]: *** > [/usr/local/sage-6.2-x86_64-Linux/local/var/lib/sage/installed/atlas-3.10.2] > Error 1 > make[2]: Leaving directory `/usr/local/sage-6.2-x86_64-Linux/build' > make[1]: *** [all] Error 2 > make[1]: Leaving directory `/usr/local/sage-6.2-x86_64-Linux/build' > > real 8m6.098s > user 5m1.192s > sys 0m49.701s > *************************************************************** > Error building Sage. > > The following package(s) may have failed to build: > > package: atlas-3.10.2 > *************************************************************** > The log file contents are > *************************************************************** > *************************************************************** > sys:1: RuntimeWarning: not adding directory '' to sys.path since it's not > owned by a trusted user. > Untrusted users could put files in this directory which might then be > imported by your Python code. As a general precaution from similar > exploits, you should not execute Python code from this directory > Found local metadata for atlas-3.10.2 > Attempting to download package atlas-3.10.2 > >>> Trying to download > http://www.sagemath.org/packages/upstream/atlas/atlas-3.10.2.tar.bz2 > [............................................................] > Checksum: 7d24b5f5213479bd55d997d03d187731be4013b6 vs > 7d24b5f5213479bd55d997d03d187731be4013b6 > atlas-3.10.2 > ==================================================== > Setting up build directory for atlas-3.10.2 > Finished set up > **************************************************** > Host system: > Linux dv7t.launchmodem.com 3.14.23-100.fc19.x86_64 #1 SMP Thu Oct 30 > 18:36:00 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux > **************************************************** > C compiler: gcc > C compiler version: > Using built-in specs. > COLLECT_GCC=/bin/gcc > COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.3/lto-wrapper > Target: x86_64-redhat-linux > Configured with: ../configure --prefix=/usr --mandir=/usr/share/man > --infodir=/usr/share/info --with-bugurl= > http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared > --enable-threads=posix --enable-checking=release --with-system-zlib > --enable-__cxa_atexit --disable-libunwind-exceptions > --enable-gnu-unique-object --enable-linker-build-id > --with-linker-hash-style=gnu > --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto > --enable-plugin --enable-initfini-array --enable-java-awt=gtk > --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre > --enable-libgcj-multifile --enable-java-maintainer-mode > --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib > --with-isl=/builddir/build/BUILD/gcc-4.8.3-20140911/obj-x86_64-redhat-linux/isl-install > > --with-cloog=/builddir/build/BUILD/gcc-4.8.3-20140911/obj-x86_64-redhat-linux/cloog-install > > --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux > Thread model: posix > gcc version 4.8.3 20140911 (Red Hat 4.8.3-7) (GCC) > **************************************************** > sys:1: RuntimeWarning: not adding directory > '/usr/local/sage-6.2-x86_64-Linux/local/var/tmp/sage/build/atlas-3.10.2' to > sys.path since it's not owned by a trusted user. > Untrusted users could put files in this directory which might then be > imported by your Python code. As a general precaution from similar > exploits, you should not execute Python code from this directory > Traceback (most recent call last): > File "./spkg-install", line 15, in <module> > from configuration import conf, cp, ln, which, try_run, edit_in_place > ImportError: No module named configuration > > real 0m0.026s > user 0m0.016s > sys 0m0.009s > ************************************************************************ > Error installing package atlas-3.10.2 > ************************************************************************ > Please email sage-devel (http://groups.google.com/group/sage-devel) > explaining the problem and including the relevant part of the log file > /usr/local/sage-6.2-x86_64-Linux/logs/pkgs/atlas-3.10.2.log > Describe your computer, operating system, etc. > If you want to try to fix the problem yourself, *don't* just cd to > /usr/local/sage-6.2-x86_64-Linux/local/var/tmp/sage/build/atlas-3.10.2 and > type 'make' or whatever is appropriate. > Instead, the following commands setup all environment variables > correctly and load a subshell for you to debug the error: > (cd > '/usr/local/sage-6.2-x86_64-Linux/local/var/tmp/sage/build/atlas-3.10.2' && > '/usr/local/sage-6.2-x86_64-Linux/sage' --sh) > When you are done debugging, you can type "exit" to leave the subshell. > ************************************************************************ > > -- You received this message because you are subscribed to the Google Groups "sage-support" group. 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