On Tue, Nov 26, 2013 at 11:43 AM, William Stein <wst...@gmail.com> wrote: > On Tue, Nov 26, 2013 at 11:01 AM, Jose Guzman <sjm.guz...@gmail.com> wrote: >> >>>> >>>> >>>> http://pub.ist.ac.at/~jguzman/doc/neuron/tutorial/Tutorial0.html#to-build-the-neuron-shared-library-for-python >>> >>> >>> Thanks -- so it's a library for "Computational Neuroscience"? Cool. >>> Maybe I should just make it available systemwide for everybody, and >>> update it regularly? >>> >> >> Yes, it's a platform for simulations of the electrical properties of neurons >> based on the cable equation. I use it a lot in combination with Sage. To >> have it all together in the cloud would be awesome! > > OK, this is more challenging than I thought. [...] > However, that link is broken... I wonder where you get the source > install from? I tried the github repos, but they require one to run > autoconf, etc., which of course doesn't work (for me).
OK, I found the script build.sh, and with that I was able to build neuron with little difficulty. This will be installed systemwide (iv and nrn) in /usr/local/, and also the neuron python library is installed into the Sage python. Again, this will be live when I next reboot the VM's. salvus@salvus-base:~$ sage ┌────────────────────────────────────────────────────────────────────┐ │ Sage Version 5.12, Release Date: 2013-10-07 │ │ Enhanced for the Sagemath Cloud │ │ Type "help()" for help. │ └────────────────────────────────────────────────────────────────────┘ sage: import neuron Warning: no DISPLAY environment variable. --No graphics will be displayed. NEURON -- Release 7.3 (980:01f9410e41bc) 2013-10-31 Duke, Yale, and the BlueBrain Project -- Copyright 1984-2013 See http://www.neuron.yale.edu/neuron/credits -- William Stein Professor of Mathematics University of Washington http://wstein.org -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To post to this group, send email to sage-support@googlegroups.com. Visit this group at http://groups.google.com/group/sage-support. For more options, visit https://groups.google.com/groups/opt_out.
