Hi,
When will the new VMWare image available? I just download it from
sagemath.org but the version I got is still 3.0.6
On Sep 21, 5:34 pm, mabshoff <[EMAIL PROTECTED]
dortmund.de> wrote:
> [Due to three security critical notebook bugs it is *highly*
> recommended that you upgrade from all previous versions of Sage.
> Binaries for all platforms are available at sagemath.org. The mirrors
> are hopefully catching up soon.]
>
> Hello folks,
>
> Sage 3.1.2 was released on September 19th, 2008. It is available at
>
> http://sagemath.org/download.html
>
> * About Sage (http://www.sagemath.org)
>
> Sage is developed by volunteers and combines 71 open source packages.
> It is available for download from sagemath.org and its mirrors in
> source or binary form. If you have any questions and/or problems
> please report them to the Google groups sage-devel or sage-support.
> You can also drop by in #sage-devel or #sage-support in freenode.
>
> ---------------------------------------------------------------------
>
> The following 42 people contributed to this release:
>
> * Tim Abbott
> * Michael Abshoff
> * Martin Albrecht
> * Robert Bradshaw
> * Arnaud Bergeron [first contribution]
> * C. Boncelet [first contribution]
> * Tom Boothby
> * Michael Brickenstein
> * Ondrej Certik
> * Craig Citro
> * Timothy Clemans
> * John Cremona
> * Karl-Dieter Crisman
> * Burcin Erocal
> * Gary Furnish
> * Alex Ghitza
> * Andrzej Giniewicz
> * Jason Grout
> * Mike Hansen
> * Marshall Hampton
> * Chris Holdsworth [first contribution]
> * Hamish Ivey-Law [first contribution]
> * David Joyner
> * Josh Kantor
> * Simon King
> * Steve Linton
> * Jason Merrill [first contribution]
> * Robert Miller
> * Minh Nguyen
> * Willem Jan Palenstijn
> * John Palmieri
> * David Philp [first contribution]
> * Yi Qiang
> * Nils-Peter Skoruppa [first contribution]
> * Franco Saliola
> * William Stein
> * Griffen Thoma [first contribution]
> * Igor Tolkov
> * Ralf-Philipp Weinmann
> * Georg Weber [first contribution]
> * Carl Witty
> * Chris Wuthrich
>
> Cheers,
>
> Michael Abshoff (release chair), William Stein
>
> * Major Features, New Spkgs and Bugfixes
>
> * Doctest Coverage Hits 60% (Mike Hansen and others)
> * Hidden Markov Models (William Stein)
> * Fix various Notebook Bugs (Timothy Clemans, Mike Hansen)
> * New Structures for Partition Refinement (Robert Miller)
> * Improved Dense Linear Algebra over GF(2) (Martin Albrecht)
> * Update to new PolyBoRi Version (0.5) and Improved Interface (Tim
> Abbott, Michael Abshoff, Martin Albrecht)
> * QEPCAD Interface (Carl Witty)
> * Update Developer's Handbook (John Palmieri)
> * Improved 64-bit OSX Support (Michael Abshoff)
> * GAP Meataxe Interface (Simon King, David Joyner)
> * Better SymPy Integration (Ondrej Certik)
> * Real Number Inputs Improved (Robert Bradshaw)
> * Faster Determinants of Dense Matrices over Multivariate Polynomial
> Rings (Martin Albrecht)
> * Arrow drawing improved (Jason Grout)
> * Eigen functions for matrices (Jason Grout)
> * Memory Leak fixes (Michael Abshoff, Craig Citro)
>
> For details see the Sage 3.1.2 Release Tour at
>
> http://wiki.sagemath.org/sage-3.1.2
>
> * Known Issues with 3.1.2:
>
> * RHEL 5 clisp build issue: the latest clisp.spkg does not build
> so please use the clisp.spkg from Sage 3.0.3.
>
> * Bug Statistics
>
> We closed 251 tickets. For details see
>
> http://trac.sagemath.org/sage_trac/milestone/sage-3.1.2
>
> or check out the closed ticket section at the end of the
> announcement.
>
> * Upcoming Releases
>
> The next release will be 3.1.3, chaired by Michael Abshoff. It will
> be a mix of new features and bug fixes.
>
> * Doctesting Coverage
>
> For 3.1.1 we had:
>
> Overall weighted coverage score: 56.5%
> Total number of functions: 20920
>
> We increased coverage by 4.0% in 3.1.2 while removing 336 functions:
>
> Overall weighted coverage score: 60.5%
> Total number of functions: 20584
>
> * Closed Tickets:
>
> Merged in Sage 3.1.2.rc5:
>
> #3534: William Stein, John Palmieri: plot -- fix circle example in the
> documentation [Reviewed by Mike Hansen]
> #3894: John Palmieri: in tutorial, live version, triple dots are not
> visible [Reviewed by Mike Hansen]
> #4063: Timothy Clemans: properly escape the titles of worksheets
> [Reviewed by Mike Hansen]
> #4133: Mike Hansen, Michael Abshoff: sage.math - sage 3.1.2.rc4
> doctest failure in interfaces/maxima.py [Reviewed By Robert Miller]
> #4130: Michael Abshoff: #4125 does not work on OS X 10.4 [Reviewed by
> Robert Miller]
> #4131: Michael Abshoff: unbreak sage-clone [Reviewed by Mike Hansen]
> #4137: William Stein: add doctests for user_type() in avatar.py
> [Reviewed by Mike Hansen]
> #4138: Michael Abshoff: Sage 3.1.2.rc5: fix documentation build issues
> [Reviewed by Mike Hansen]
>
> Merged in Sage 3.1.2.rc4:
>
> #925: Michael Abshoff: valgrind options to sage (sage -valgrind, sage
> -
> callgrind, etc.) should be more customizable [Reviewed by Robert
> Miller]
> #1915: Alex Ghitza: infinity doesn't behave well [Reviewed by John
> Cremona]
> #3563: Michael Abshoff: make "def atlas()" deal with the Accelerate
> Framework on OSX [Reviewed by Robert Miller]
> #3675: Michael Abshoff: upgrade optinal valgrind.spkg to the 3.3.1
> release [Reviewed by Robert Miller]
> #3847: Alex Ghitza: can't make vector of ints [Reviewed by John
> Cremona]
> #4097: Robert Miller: matrix automorphism groups [Reviewed by David
> Joyner]
> #4119: Martin Albrecht: doctests + fixes for SymbolicData interface
> [Reviewed by Mike Hansen]
> #4121: Robert Miller: correct the translation for automorphism groups
> of graphs with edge labels [Reviewed by Mike Hansen]
> #4122: Michael Abshoff: build python without pymalloc for
> SAGE_VALGRIND, add sleep(3) for parallel make install issue [Reviewed
> by Robert Miller]
> #4123: Michael Abshoff: source $SAGE_ROOT/toolchain/toolchain-env if
> it exists [Reviewed by Robert Miller]
> #4124: Robert Miller: disable pbuild [Reviewed by Michael Abshoff]
> #4125: David Philp: Build breaks entirely or pulls in non-standard
> libraries with fink and macports [Reviewed by Robert Miller]
>
> Merged in Sage 3.1.2.rc3:
>
> #3009: Jason Merrill: remove spaces after continuation characters
> "\" [Reviewed by Michael Abshoff]
> #3422: Jason Merrill: Minor typo in docs for zeta_zeros() [Reviewed by
> Michael Abshoff]
> #4110: Michael Abshoff: Memory leak in pickling matrices of GF(2)
> [Reviewed by Robert Miller]
> #4112: Mike Hansen: 3.1.2.rc2 doctest failure: sage/interfaces/
> sage0.py [Reviewed by Craig Citro]
> #4113: Craig Citro: Doctest failure in free_module.py [Reviewed by
> Michael Abshoff]
> #4114: Mike Hansen: hang in lisp.py on OS X 10.5 [Reviewed by Michael
> Abshoff]
> #4117: Craig Citro, Michael Abshoff: number_field_* leaks caused by
> gen.pyx's type(gen self) [Reviewed by Michael Abshoff, Craig Citro]
> #4118: Craig Citro: fix various Pari-related issues [Reviewed by
> Michael Abshoff]
>
> Merged in Sage 3.1.2.rc2:
>
> #3957: Mike Hansen: notebook -- major bug in opening notebooks and
> plots [Reviewed by Timothy Clemans]
> #3978: Michael Abshoff: Sage 3.1.2.alpha1: ghmm and hmm numerical
> noise doctest failures [Reviewed by Robert Miller]
> #4085: Robert Bradshaw: high precision real literals [Reviewed by Mike
> Hansen]
> #4086: Michael Abshoff: Fix polybori-0.5rc.p3.spkg build issue from
> vanilla tarball [Reviewed by Martin Albrecht]
> #4090: Georg Weber, Michael Abshoff: polybori-0.5rc1.p4 fails to build
> on OSX 10.4 [Reviewed by Robert Miller]
> #4091: Craig Citro: Sage 3.1.2.rc1: matrix_real_double_dense.py
> doctest failure [Reviewed by Jason Grout]
> #4092: Martin Albrecht: libm4ri-20080904 fails to build on OSX 10.4
> [Reviewed by Michael Abshoff]
> #4093: John Cremona: fix numerical fuzz in period_lattice for 3.1.2
> [Reviewed by Michael Abshoff]
> #4094: Tom Boothby: evaluate all causes massive browser hang [Reviewed
> by Mike Hansen]
> #4098: William Stein: "T1 = M1.hecke_operator(13^9)" blows up on 32
> bit builds [Reviewed by Michael Abshoff]
> #4101: Robert Bradshaw: cpdef horribly broken in last Cython [Reviewed
> by Michael Abshoff]
> #4107: Minh Nguyen: trivial typos in tut.tex [Reviewed by Mike Hansen,
> Michael Abshoff]
> #4108: Michael Abshoff: disable hmm.pyx and chmm.pyx doctests
> [Reviewed by Robert Miller]
>
> Merged in Sage 3.1.2.rc1:
>
> #1785: Alex Ghitza: bug in creating points on elliptic curves over
> extension fields [Reviewed by John Cremona]
> #3711: Mike Hansen: notebook -- folder of worksheets not properly
> saved [Reviewed by Timothy Clemans]
> #3918: Mike Hansen: notebook -- MAJOR BUG involving uploading file
> from URL [Reviewed by Timothy Clemans]
> #4064: Alex Ghitza, John Cremona: fix pari precision issues [Reviewed
> by John Cremona, Alex Ghitza]
> #4070: Michael Abshoff: fix polybori-0.5.rc1 build issues [Reviewed by
> Martin Albrecht]
> #4071: Mike Hansen: Fix issues in the lisp interface [Reviewed by
> Michael Abshoff]
> #4072: Mike Hansen: Fix issue in trait_names in the sage0 interface
> [Reviewed by Martin Albrecht]
> #4073: Martin Albrecht: disable colors in sage0 [Reviewed by Mike
> Hansen]
> #4074: Mike Hansen: the notebook is totally broken in secure mode with
> the new twisted spkg [Reviewed by Michael Abshoff]
> #4075: David Joyner: fix bug in BCHCode [Reviewed by Robert Miller]
> #4077: Mike Hansen: notebook - ReactorNotRunning error consistently
> seen in sage-3.1.2.rc0 [Reviewed by Michael Abshoff]
> #4078: Mike Hansen: evaluate all has sometimes erratic behavior
> [Reviewed by William Stein]
> #4080: Martin Albrecht: Symbol clash between global M4RI and
> PolyBoRi's M4RI [Reviewed by Michael Abshoff]
> #4081: Robert Miller: memleaks in nonlinear binary codes [Reviewed by
> Michael Abshoff]
> #4082: Michael Abshoff: Sage 3.1.2.rc0: numerical noise on OSX/Intel
> in schemes/elliptic_curves/ell_number_field.py [Reviewed by Mike
> Hansen]
> #4084: Jason Merrill: plot(1/cos,-1,1) fails [Reviewed by Michael
> Abshoff]
>
> Merged in Sage 3.1.2.rc0:
>
> #1115: John Cremona: Sha_an either fails or lies when prec isn't the
> default 53 [Reviewed by Alex Ghitza]
> #1170: John Cremona: Behaviour of the order function for infinite
> groups [Reviewed by Alex Ghitza]
> #1877: Griffen Thoma, Jason Merrill: same range variables -- bug in 3d
> plotting [Reviewed by Arnaud Bergeron]
> #3264: Tim Abbott, Martin Albrecht: Upgrade PolyBoRi to 0.5rc
> [Reviewed by Michael Abshoff]
> #3377: Chris Wuthrich, John Cremona: torsion and other functions for
> elliptic curves over number fields [Reviewed by Alex Ghitza]
> #3728: John Palmieri: tutorial: add documentation for solving matrix
> equations [Reviewed by John Cremona, Alex Ghitza]
> #3857: Chris Holdsworth, John Cremona, Nils Skoruppa:
> BinaryQF_reduced_representatives in binary_qf.py produces extra
> unreduced forms [Reviewed by Alex Ghitza]
> #3885: Craig Citro, Martin Albrecht: Bug in free module __call__
> method [Reviewed by Mike Hansen, Robert Bradshaw]
> #3907: Mike Hansen: plot correctly up to asymptotes [Reviewed by
> Robert Miller]
> #3922: Jason Grout: Make nice arrows [Reviewed by Mike Hansen, Michael
> Abshoff]
> #3954: Alex Ghitza: bug in elliptic curve period_lattice [Reviewed by
> John Cremona]
> #3960: Mike Hansen: "edit this" on published worksheets doesn't work
> anymore in 3.1.1 [Reviewed by Michael Abshoff]
> #4023: Alex Ghitza: Sage 3.1.2.alpha3: 32 vs. 64 bit doctesting issues
> for gp [Reviewed by Michael Abshoff, Martin Albrecht]
> #4026: Gary Furnish: Move Macaulay2 to latest upstream 1.1-r7221
> [Reviewed by Martin Albrecht]
> #4040: Marshall Hampton: Update biopython optional package to 1.47
> [Reviewed by Michael Abshoff]
> #4042: Martin Albrecht: libm4ri-20080903 fails to build on Itanium
> Linux [Reviewed by Michael Abshoff]
> #4043: Michael Abshoff: Sage 3.1.2.alpha4: numerical noise in plot.py
> [Reviewed by Mike Hansen]
> #4044: Martin Albrecht: create AES equation systems for PolyBoRi
> [Reviewed by Ralf-Philipp Weinmann]
> #4045: Martin Albrecht: fix PolyBoRi GB calculations in some
> situations [Reviewed by Ralf-Philipp Weinmann]
> #4047: Robert Miller: automorphism groups/canonical labels for
> hypergraphs [Reviewed by Mike Hansen]
> #4049: Arnaud Bergeron: Don't use the -i option to tar as it does not
> exist on most BSDs [Reviewed by Michael Abshoff]
> #4050: Mike Hansen: Shared worksheets are not copied correctly
> [Reviewed by Michael Abshoff]
> #4051: Arnaud Bergeron: Use of tar -j in sage-pkg [Reviewed by Michael
> Abshoff]
> #4052: Arnaud Bergeron: readline spkg doesn't build under OpenBSD
> [Reviewed by Michael Abshoff]
> #4053: Robert Miller: more checking for graph6, sparse6 and dig6
> formats [Reviewed by Michael Abshoff]
> #4054: Robert Miller: shorten doctesting in graph_generators.py
> [Reviewed by Michael Abshoff]
> #4059: Arnaud Bergeron: libm4ri configure is seriously broken on
> anything not x86 [Reviewed by Martin Albrecht]
> #4066: Michael Abshoff: Sage 3.1.2.alpha3: Solaris build fixes for the
> Sage library [Reviewed by Martin Albrecht]
> #4067: Michael Abshoff: hmm.pyx and ghmm.pyx valgrind issues [Reviewed
> by Martin Albrecht]
> #4068: Martin Albrecht: determinants for matrices over multivariate
> polynomial rings slow [Reviewed by Mike Hansen]
>
> Merged in Sage 3.1.2.alpha4:
>
> #309: Alex Ghitza: rationals enumeration not monotone in height
> [Reviewed by John Cremona]
> #1834: Alex Ghitza: General linear group over ZZ hangs in __call__
> [Reviewed by John Cremona]
> #2547: Jason Merrill: Implement gradient(), hessian() for callable
> symbolic expressions [Reviewed by Mike Hansen]
> #3451: Alex Ghitza: inaccurate error message in scheme morphisms
> [Reviewed by John Cremona]
> #3622: Robert Bradshaw: numerical fast integration using fast float
> [Reviewed by Jason Merrill]
> #3805: Jason Merrill: sage gets basic arithmetic with sqrt(3) wrong
> [Reviewed by Michael Abshoff]
> #3921: Jason Merrill: calculus -- solve(..., constant) should complain
> by default [Reviewed by Alex Ghitza]
> #3969: Robert Brashaw: Matrix_mod2_dense hashs follow-up (see #3724))
> [Reviewed by Martin Albrecht]
> #3974: Chris Wuthrich: renaming of integral_weierstrass_model to
> integral_short_weierstrass_model [Reviewed by John Cremona]
> #4016: Alex Ghitza: improve doctests to schemes/generic/scheme.py
> [Reviewed by Robert Bradshaw]
> #4017: Michael Abshoff: Sage 3.1.2.alpha1 - PPC OSX: numerical noise
> in sage/stats/hmm/chmm.pyx [Reviewed by Mike Hansen]
> #4018: Robert Bradshaw: casting of non t_INT pari integers [Reviewed
> by Alex Ghitza]
> #4019: Robert Bradshaw: numerator and denominator for QQ[x] [Reviewed
> by Alex Ghitza]
> #4020: Robert Bradshaw: fraction field doctests [Reviewed by Mike
> Hansen]
> #4024: Martin Albrecht: upgrade M4RI to newest upstream release
> (20080901) [Reviewed by Michael Abshoff]
> #4025: Michael Abshoff, Mike Hansen: Sage 3.1.2.alpha3: benchmark.py
> runs Maple tests that should be optional [Reviewed by David Joyner]
> #4027: Martin Albrecht: Sage 3.1.2.alpha3: matrix_mod2_dense.pyx
> doctest failure on 32 bits [Reviewed by Michael Abshoff]
> #4028: Mike Hansen: doctest and improve sage/interfaces/axiom.py
> [Reviewed by Michael Abshoff]
> #4030: Jason Merrill: Vectors of callable things should be callable
> [Reviewed by Mike Hansen]
> #4031: Jason Merrill: Callable symbolic expressions should allow
> keyword args [Reviewed by Mike Hansen]
> #4032: Michael Abshoff: Add x86 Solaris build support for libSingular
> [Reviewed by Martin Albrecht]
> #4033: Michael Abshoff: disabled libiconv on Solaris for the r.spkg
> [Reviewed by Martin Albrecht]
> #4034: Michael Abshoff: Fix rubiks.spkg build on Solaris [Reviewed by
> Martin Albrecht]
> #4037: Alex Ghitza: list_of_first_n() broken in interact.py [Reviewed
> by John Cremona]
>
> Merged in Sage 3.1.2.alpha3:
>
> #708: Alex Ghitza: performance issue -- Magma is way faster at testing
> some polynomials for irreducibility [Reviewed by Martin Albrecht]
> #1213: Jason Merrill: strange unused file sage/plot/mpl_wrapper.py
> should be fixed or deleted [Reviewed by Michael Abshoff]
> #1647: John Palmieri: rewrite spkg chapter in the developer handbook
> [Reviewed by Martin Albrecht]
> #1648: John Palmieri: add chapter in developer's handbook about bug
> handling via trac [Reviewed by Martin Albrecht]
> #2078: John Palmieri: programming guide: section "quick Mercurial
> tutorial for Sage" is wrong/misleading [Reviewed by Martin Albrecht]
> #2422: John Palmieri: Update Programming Guide [Reviewed by Martin
> Albrecht]
> #3324: Martin Albrecht: Matrix_mod2_dense to/from PNG routines
> [Reviewed by William Stein, Michael Abshoff]
> #3376: Martin Albrecht: matrix multiplication should use Strassen's
> algorithm [Reviewed by Robert Miller, Michael Abshoff]
> #3393: John Palmieri: fix typo in documentation related to sage_search
> [Reviewed by Martin Albrecht]
> #3481: Mike Hansen: remove sage/plot/plot3dsoya.py from sage [Reviewed
> by Michael Abshoff]
> #3780: Martin Albrecht: add fast col_swap method for dense matrices
> over GF(2) [Reviewed by Robert Miller]
> #3843: Robert Miller:n ice tree plotting - improve graph plotting docs
> [Reviewed by Franco Saliola]
> #3905: John Palmieri: revision of programming guide [Reviewed by
> Martin Albrecht]
> #3956: Martin Albrecht: Fast hash for matrices over finite fields
> [Reviewed by Robert Bradshaw]
> #3988: William Stein: interfaces -- add algorithm='magma' for
> polynomial factor and galois_group commands [Reviewed by Martin
> Albrecht]
> #3991: Martin Albrecht: Matrix_mod2_dense.__hash__ 32-bit doctest
> failure [Reviewed by John Cremona]
> #3992: Michael Abshoff: Sage 3.1.2.alpha2: three tests in sage/
> interfaces/octave.py need to be optional [Reviewed by John Cremona]
> #3995: Mike Hansen: improve and doctest the MuPAD interface [Reviewed
> by Michael Abshoff]
> #3996: Mike Hansen: doctest the Singular interface [Reviewed by Martin
> Albrecht]
> #3997: Mike Hansen: doctest and fix the Lisp interface [Reviewed by
> Michael Abshoff]
> #4001: Martin Albrecht: ZZ['x'].gen()^(2^20) should work but doesn't
> [Reviewed by John Cremona]
> #4002: Robert Miller, Mike Hansen: raise coverage of sage.graphs to
> 100% [Reviewed by Mike Hansen, Robert Miller]
> #4003: Mike Hansen: increase coverage of sage/interfaces/maple.py
> [Reviewed by Michael Abshoff]
> #4004: Mike Hansen: increase coverage of sage/interfaces/gap.py and
> sage/interfaces/gp.py [Reviewed by Michael Abshoff]
> #4005: Robert Miller: sage-coverage screws up with lambda functions as
> default arguments [Reviewed by Michael Abshoff]
> #4006: Mike Hansen: Remove unused code in sage/libs/pari/functional.py
> [Reviewed by Michael Abshoff]
> #4007: Michael Abshoff: OSX 10.4/5: build libpng.dylib again [Reviewed
> by Robert Miller]
> #4008: Michael Abshoff: OSX 10.4/5: build python without the OSX
> specific extensions [Reviewed by Robert Miller]
> #4009: Michael Abshoff: OSX 10.4/5: build R without the aqua support
> [Reviewed by Robert Miller]
> #4014: Mike Hansen: remove sage/plot/graph.py from Sage [Reviewed by
> Michael Abshoff]
> #4015: Robert Miller: add docs to tests/benchmark.py [Reviewed by
> Michael Abshoff]
> #4016: Alex Ghitza: improve doctests to schemes/generic/scheme.py
> [Reviewed by Robert Bradshaw]
>
> Merged in Sage 3.1.2.alpha2:
>
> #132: Simon King, Mike Hansen: maxima -- implement special arithmetic
> for MaximaFunction class [Reviewed by Martin Albrecht]
> #772: Carl Witty, Jason Grout: create experimental QEPCAD.spkg for
> quantifier elimination and solving systems of inequalities [Reviewed
> by Michael Abshoff, Jason Grout, Carl Witty]
> #1952: Martin Albrecht, Mike Hansen: Follow up to #1940: Ideal
> comparison improvements [Reviewed by Mike Hansen, Martin Albrecht]
> #2209: Steve Linton: gap on itanium - incorporate steve linton's new
> fixes so gap builds fine with optimizations [Reviewed by William
> Stein]
> #2366: Mike Hansen: add docstring to sloane_find and sloane_sequence
> [Reviewed by Timothy Clemans]
> #3253: Alex Ghitza: f.jacob() used to work to compute jacobian ideal.
> Now it doesn't [Reviewed by Martin Albrecht]
> #3431: Carl Witty: QEPCAD interface [Reviewed by Jason Grout]
> #3440: Martin Albrecht: Our PolyBoRi's GB calculation in AES mode is
> broken [Reviewed by Burcin Erocal]
> #3630: Yi Qiang: upgrade twisted.spkg to 8.1.0 release [Reviewed by
> Michael Abshoff]
> #3635: Martin Albrecht: If m is a matrix, then m.plot() should call
> matrix_plot [Reviewed by Jason Grout]
> #3823: Igor Tolkov: Interact - get rid of default height [Reviewed by
> Jason Grout]
> #3883: John Cremona: Streamline elliptic curve division (torsion)
> polynomials [Reviewed by Chris Wuthrich]
> #3892: Hamish Ivey-Law, Martin Albrecht: PowerSeries random element
> over GF(q) (Givaro) fails [Reviewed by Alex Ghitza]
> #3909: Josh Kantor: Updating jmol package to 11.6rc8 [Reviewed by
> Jason Grout, Michael Abshoff]
> #3915: Martin Albrecht: PolyBoRi interface improvements [Reviewed by
> Michael Brickenstein]
> #3935: Jason Merrill: ode_solver __init__ method ignores many
> parameters [Reviewed by Jason Grout]
> #3961: John Cremona: bug in ell_finite_field.abelian_group() [Reviewed
> by Alex Ghitza]
> #3965: Martin Albrecht: one line fix for PolyBoRi to Magma conversion
> [Reviewed by Burcin Erocal]
> #3966: Jason Grout: The ode cython example gives errors [Reviewed by
> Jason Merrill]
> #3968: Jason Grout: Magma interface sometimes fails on long inputs
> [Reviewed by Willem Jan Palenstijn]
> #3971: William Stein: hidden markov models -- implement nsteps and
> log_likelihood_cutoff [Reviewed by Josh Kantor]
> #3972: Michael Abshoff: 3.1.2.alpha1: numerical noise in plot.py
> [Reviewed by Craig Citro]
> #3973: Chris Wuthrich: short_weierstrass_model in characteristic 3
> [Reviewed by John Cremona]
> #3975: Arnaud Bergeron: Small mistake in the new plot() code [Reviewed
> by Mike Hansen]
> #3976: Mike Hansen: improve doctests to expect.py, maxima.py, and
> lie.py [Reviewed by Robert Miller]
> #3977: Mike Hansen: get interfaces/octave.py up to 100% coverage
> [Reviewed by Robert Miller]
> #3982: Robert Miller: Pipe stdout to /dev/null to help sage_timeit
> with "print" statements [Reviewed by Mike Hansen]
> #3983: Mike Hansen: get coverage for sage/interfaces/sage0.py up to
> 100% [Reviewed by Michael Abshoff]
> #3989: Michael Abshoff: fix autotools issues with gd-2.0.35 [Reviewed
> by Craig Citro]
>
> Merged in Sage 3.1.2.alpha1:
>
> #1539: William Stein: bdist of sage should include devel/doc [Reviewed
> by Michael Abshoff]
> #2000: Martin Albrecht: fall back to univariate factoring if possible
> [Reviewed by Carl Witty]
> #2410: Jason Grout: parametric_plot and constants [Reviewed by Mike
> Hansen]
> #2491: Mike Hansen: Showing source from sloane_functions [Reviewed by
> Michael Abshoff]
> #2569: Carl Witty: Add XOR to preparser [Reviewed by Mike Hansen]
> #3359: Martin Albrecht: bug/inconsistency in multivariate polynomial
> substitution [Reviewed by Mike Hansen]
> #3390: Jason Grout: update numpy to the 1.1.0 release [Reviewed by
> Michael Abshoff]
> #3392: Tim Abbott, Jason Grout: upgrade matplotlib to 0.98.3 release
> [Reviewed by Michael Abshoff]
> #3432: Martin Albrecht: MPolynomial_libsingular does not have a
> degrees method [Reviewed by Mike Hansen]
> #3653: Carl Witty: Better random complex numbers [Reviewed by Mike
> Hansen]
> #3654: Jason Grout: Deprecation warning function [Reviewed by Michael
> Abshoff, Mike Hansen]
> #3655: C. Boncelet, David Joyner: left multiplication in piecewise
> does not work [Reviewed by Mike Hansen]
> #3719: David Joyner: bug in group cohomology [Reviewed by Alex Ghitza]
> #3724: Martin Albrecht: faster hashs for Matrix_mod2_dense [Reviewed
> by Simon King]
> #3792: Ondrej Certik: fix Sage build when there is a broken systemwide
> freetype library [Reviewed by Michael Abshoff]
> #3794: Jason Grout: Create eigen functions for matrices [Reviewed by
> John Cremona]
> #3813: Franco Saliola, Arnaud Bergeron: Improve adaptive rendering in
> plot() [Reviewed by William Stein, Mike Hansen]
> #3826: Carl Witty: Empty string in interact prints \x00 [Reviewed by
> Igor Tolkov]
> #3853: Mike Hansen, Jason Grout: plot.py improvements part 1: Remove
> all factories [Reviewed by Jason Grout, Mike Hansen, Michael Abshoff]
> #3854: Igor Tolkov: interact needs to use "notruncate" [Reviewed by
> Martin Albrecht, Mike Hansen]
> #3869: John Cremona: CremonaDatabase functions iter() and
> isogeny_classes() sort keys wrongly [Reviewed by Carl Witty]
> #3873: Jason Grout, Carl Witty: Doctest should test for warnings
> [Reviewed by Carl Witty, Michael Abshoff]
> #3896: Robert Bradshaw: Upgrade Cython to 0.9.8.1.1 [Reviewed by
> Michael Abshoff]
> #3910: Carl Witty: adjust interval printing: precise integers print as
> integers [Reviewed by John Cremona]
> #3913: John Cremona: order function not defined for ideal classes
> [Reviewed by Alex Ghitza]
> #3926: Martin Albrecht: fix Macaulay2 building [Reviewed by Michael
> Abshoff]
> #3927: John Cremona: Several enhancements and bug fixes for
> Factorization class [Reviewed by Carl Witty]
> #3939: Martin Albrecht: copyright notice in integer.pyx [Reviewed by
> Michael Abshoff]
> #3942: Robert Miller: Sage interfaces vs. pyprocessing [Reviewed by
> William Stein]
> #3946: Chris Holdsworth: Tidier BinaryQF reductions [Reviewed by John
> Cremona]
> #3947: Michael Abshoff, David Philp: build python against Sage's
> readline [Reviewed by Mike Hansen]
> #3948: Michael Abshoff: Add 64 bit OSX build support for clisp
> [Reviewed by Mike Hansen]
> #3952: Mike Hansen: make plot() and parametric_plot() use fast_float
> on their functions [Reviewed by Carl Witty, Michael Abshoff]
> #3963: Mike Hansen: bug in converting Sage's rationals to Sympy
> rationals [Reviewed by Michael Abshoff]
>
> Merged in Sage 3.1.2.alpha0:
>
> #1300: Simon King, Martin Albrecht: Customize the output of Singular
> matrices [Reviewed by Martin Albrecht, Simon King]
> #1470: Michael Abshoff, Mike Hansen: upgrade maxima.spkg to 5.16.2
> [Reviewed by Mike Hansen, Michael Abshoff]
> #1621: Michael Abshoff: update gd to 2.0.35/update 64 bit OSX support
> [Reviwed by Robert Miller]
> #3013: Michael Abshoff: bug in integrate (found during a talk!)
> [Reviewed by Mike Hansen]
> #3174: Michael Abshoff: add 64 bit OSX build support to flint
> [Reviewed by Robert Miller]
> #3175: Michael Abshoff: add 64 bit OSX build support to zlib [Reviewed
> by Robert Miller]
> #3194: Michael Abshoff: fix 64 bit OSX build support for singular
> [Reviwed by Robert Miller]
> #3195: Michael Abshoff: add 64 bit OSX build support for polybori
> [Reviwed by Robert Miller]
> #3199: Michael Abshoff: fix 64 bit OSX build support for zn_poly
> [Reviwed by Mike Hansen]
> #3641: Martin Albrecht: new Singular upstream release [Reviewed by
> Michael Abshoff]
> #3683: Simon King, David Joyner: Wrap GAP's meataxe implementation
> [Reviewed by David Joyner, Simon King]
> #3707: Ondrej Certik: Make all common Sage classes convertible to
> SymPy, update Sympy to 0.6.2 [Reviewed by Martin Albrecht]
> #3710: Andrzej Giniewicz: Segfault in Tachyon on some latest GCC
> versions [Reviewed by Michael Abshoff]
> #3726: William Stein: stats/finance -- add support for hidden markov
> models to sage [Reviewed by Josh Kantor]
> #3773: William Stein: hidden markov models -- part 2 [Reviewed by Josh
> Kantor]
> #3874: Karl-Dieter Crisman: Moebius plot bug [Reviewed by William
> Stein]
> #3880: Robert Miller: Bad behavior of arrows [Reviewed by Michael
> Abshoff]
> #3884: Michael Abshoff: change banner in "sage -advanced" [Reviewed by
> William Stein]
> #3887: Craig Citro, Nils-Peter Skoruppa: Fix bug in determinant
> [Reviewed by William Stein]
> #3888: Martin Albrecht: fix trivial indentation [Reviewed by Michael
> Abshoff]
> #3908: Carl Witty: fix major memory leak in fast_float [Reviewed by
> Michael Abshoff]
> #3919: Igor Tolkov: Selector - do not inset a lone button [Reviewed by
> William Stein]
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