On Apr 1, 6:12 pm, "John P. Burkett" <[EMAIL PROTECTED]> wrote:
> Hi Michael,
>
> Thanks for your swift response.
>
> mabshoff wrote:
>
> > Please gzip up install.log and post a link here so that I can take a
> > look. My magic power of deduction is in the shop, so I need to take a
> > look at the logs ;)
>
> My install.log is available
> athttp://www.uri.edu/artsci/ecn/burkett/install.log.gz
>
> Best regards,
> John
>
Hi John,
looking at the log I cannot fine the clisp failure. It seems that you
upgraded from sage-2.8.2. Was that a direct upgrade from 2.8.2. or did
you do intermediate upgrades?
If you did upgrade straight up from 2.8.2 I would highly recommend to
build Sage from scratch in a different directory. We do test upgrades
from each release the the next one, but jumping over 15+ releases
tends to make things a little unpredictable. The rule of thumb is that
x.y.z->x.y.z+n works, but x.y.?->x.y+n.? has a tendency to cause
trouble.
>
>
> >> Near the end of my lengthy
> >> /usr/local/sage-2.8.2-debian32-i686-Linux/install.log
> >> the following, possibly relevant, lines appear:
> >> "Setting RHOMES to ['/usr/lib/R']
> >> Traceback (most recent call last):
> >> File "setup.py", line 106, in <module>
> >> RVERSION = rpy_tools.get_R_VERSION(RHOME, force_exec=True)
> >> File
> >> "/usr/local/sage-2.8.2-debian32-i686-Linux/spkg/build/rpy-1.0.1.p1/src/rpy_tools.py",
> >> line 99, in get_R_VERSION
> >> " `%s'.\n" % rexec )
> >> RuntimeError: Couldn't execute the R interpreter `/usr/lib/R/bin/R'.
> >> Error building RPY -- Python interface to R.
> >> real 0m0.221s
> >> user 0m0.066s
> >> sys 0m0.018s
> >> sage: An error occurred while installing rpy-1.0.1.p1"
>
> >> The file /usr/lib/R/bin/R exists. When I type "R", R starts. I don't
> >> why the system "couldn't execute the R interpreter."
Things somehow go wrong here:
RHOMES= []
DEBUG= True
Setting RHOMES to ['/usr/lib/R']
Traceback (most recent call last):
File "setup.py", line 106, in <module>
RVERSION = rpy_tools.get_R_VERSION(RHOME, force_exec=True)
File "/usr/local/sage-2.8.2-debian32-i686-Linux/spkg/build/
rpy-1.0.1.p1/src/rpy_tools.py", line 99, in get_R_VERSION
" `%s'.\n" % rexec )
RuntimeError: Couldn't execute the R interpreter `/usr/lib/R/bin/R'.
Sage's R interpreter wouldn't be in /usr/lib. I am clueless to what is
going on here. Can you check if you shell environment contains any
reference to R? Let me think about this problem for a little while,
maybe I will come up with something.
Cheers,
Michael
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