I've got an error when compiling SageMath 9.0 from source on a Slackware 14.2 machine. I've done this without error on a different machine with an identical OS, so I am a little mystified. The message is
The following package(s) may have failed to build (not necessarily during this run of 'make all-build'): * package: iml-1.0.4p1.p2 log file: /tmp/SBo/sage-9.0/logs/pkgs/iml-1.0.4p1.p2.log build directory: /tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2 The relevant section of the log file (which is attached in full) is /usr/bin/bash ../libtool --tag=CC --mode=link gcc -I///usr/include -I/tmp/SBo/ sage-9.0/local/include -I. -O3 -g -version-info 1:1:1 -L/tmp/SBo/sage-9.0 /loc al/lib -Wl,-rpath,/tmp/SBo/sage-9.0/local/lib -lm -o libiml.la -rpath /tmp/ SBo/ sage-9.0/local/lib libiml_la-basisop.lo libiml_la-certsolve.lo libiml_la- error.l o libiml_la-latreduce.lo libiml_la-memalloc.lo libiml_la-mtrans.lo libiml_la -non sysolve.lo libiml_la-padiclift.lo libiml_la-reconsolu.lo libiml_la-RNSop.lo libi ml_la-nullspace.lo -L///usr/lib -lgmp -L/tmp/SBo/sage-9.0/local/lib -lgmp -L/tmp /SBo/sage-9.0/local/lib -L/tmp/SBo/sage-9.0/local/lib -lopenblas libtool: link: gcc -shared -fPIC -DPIC .libs/libiml_la-basisop.o .libs/ libiml_ la-certsolve.o .libs/libiml_la-error.o .libs/libiml_la-latreduce.o .libs/ libiml_ la-memalloc.o .libs/libiml_la-mtrans.o .libs/libiml_la-nonsysolve.o .libs/ libiml _la-padiclift.o .libs/libiml_la-reconsolu.o .libs/libiml_la-RNSop.o .libs/ libiml _la-nullspace.o -L/tmp/SBo/sage-9.0/local/lib -lm -L///usr/lib /usr/lib/libgmp .so -lopenblas -O3 -Wl,-rpath -Wl,/tmp/SBo/sage-9.0/local/lib -Wl,-soname -Wl ,libiml.so.0 -o .libs/libiml.so.0.1.1 /usr/lib64/gcc/x86_64-slackware-linux/5.5.0/../../../../x86_64-slackware- linux/b in/ld: skipping incompatible ///usr/lib/libm.so when searching for -lm /usr/lib64/gcc/x86_64-slackware-linux/5.5.0/../../../../x86_64-slackware- linux/b in/ld: skipping incompatible ///usr/lib/libm.a when searching for -lm /usr/lib/libgmp.so: error adding symbols: File in wrong format collect2: error: ld returned 1 exit status Makefile:373: recipe for target 'libiml.la' failed make[6]: *** [libiml.la] Error 1 make[6]: Leaving directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4 p1.p2/src/src' Info about my machine: $ uname -a Linux Zonadar 4.4.14 #1 SMP Fri Jun 24 13:30:15 CDT 2016 x86_64 Intel(R) Core(TM) i5 CPU 760 @ 2.80GHz GenuineIntel GNU/Linux Any thoughts? -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/ee807d7e-2d3b-402d-a9fe-9eed37eb29cf%40googlegroups.com.
Found local metadata for iml-1.0.4p1.p2 Using cached file /tmp/SBo/sage-9.0/upstream/iml-1.0.4p1.tar.bz2 iml-1.0.4p1.p2 ==================================================== Setting up build directory for iml-1.0.4p1.p2 Finished extraction Applying patches from ../patches... Applying ../patches/examples.patch patching file examples/exam-nullspace.c patching file examples/exam-nullspace2.c **************************************************** Host system: Linux Zonadar 4.4.14 #1 SMP Fri Jun 24 13:30:15 CDT 2016 x86_64 Intel(R) Core(TM) i5 CPU 760 @ 2.80GHz GenuineIntel GNU/Linux **************************************************** C compiler: gcc C compiler version: Reading specs from /usr/lib64/gcc/x86_64-slackware-linux/5.5.0/specs COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-slackware-linux/5.5.0/lto-wrapper Target: x86_64-slackware-linux Configured with: ../gcc-5.5.0/configure --prefix=/usr --libdir=/usr/lib64 --mandir=/usr/man --infodir=/usr/info --enable-shared --enable-bootstrap --enable-languages=ada,c,c++,fortran,go,java,lto,objc --enable-threads=posix --enable-checking=release --enable-objc-gc --with-system-zlib --with-python-dir=/lib64/python2.7/site-packages --enable-libstdcxx-dual-abi --with-default-libstdcxx-abi=gcc4-compatible --disable-libunwind-exceptions --enable-__cxa_atexit --enable-libssp --enable-lto --disable-install-libiberty --with-gnu-ld --verbose --enable-java-home --with-java-home=/usr/lib64/jvm/jre --with-jvm-root-dir=/usr/lib64/jvm --with-jvm-jar-dir=/usr/lib64/jvm/jvm-exports --with-arch-directory=amd64 --with-antlr-jar=/home/slackware/slackbuilds/gcc-5.5.0/antlr-runtime-3.4.jar --enable-multilib --target=x86_64-slackware-linux --build=x86_64-slackware-linux --host=x86_64-slackware-linux Thread model: posix gcc version 5.5.0 (GCC) **************************************************** Package 'iml' is currently not installed No legacy uninstaller found for 'iml'; nothing to do Configuring iml-1.0.4p1.p2 configure: WARNING: you should use --build, --host, --target configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for stdlib.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for bzero... yes checking for calloc... yes checking for floor... yes Default checking path = /tmp/SBo/sage-9.0/local /usr /usr/local checking for GMP >= 3.1.1... found checking whether GMP is 4.0 or greater... yes checking for CBLAS... found checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config/Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating examples/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode ------------------------------------------------------------------------ Configuration: Source code location: . Compiler: gcc Compiler flags: -I. -O3 -g Linker flags: -L/tmp/SBo/sage-9.0/local/lib -Wl,-rpath,/tmp/SBo/sage-9.0/local/lib -lm Host System Type: x86_64-unknown-linux-gnu Install path: /tmp/SBo/sage-9.0/local See config.h for further configuration information. ------------------------------------------------------------------------ Building iml-1.0.4p1.p2 make[4]: Entering directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2/src' make all-recursive make[5]: Entering directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2/src' Making all in config make[6]: Entering directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/config' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/config' Making all in src make[6]: Entering directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/src' /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-basisop.lo `test -f 'basisop.c' || echo './'`basisop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c basisop.c -fPIC -DPIC -o .libs/libiml_la-basisop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c basisop.c -o libiml_la-basisop.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-certsolve.lo `test -f 'certsolve.c' || echo './'`certsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c certsolve.c -fPIC -DPIC -o .libs/libiml_la-certsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c certsolve.c -o libiml_la-certsolve.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-error.lo `test -f 'error.c' || echo './'`error.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c error.c -fPIC -DPIC -o .libs/libiml_la-error.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c error.c -o libiml_la-error.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-latreduce.lo `test -f 'latreduce.c' || echo './'`latreduce.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c latreduce.c -fPIC -DPIC -o .libs/libiml_la-latreduce.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c latreduce.c -o libiml_la-latreduce.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-memalloc.lo `test -f 'memalloc.c' || echo './'`memalloc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c memalloc.c -fPIC -DPIC -o .libs/libiml_la-memalloc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c memalloc.c -o libiml_la-memalloc.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-mtrans.lo `test -f 'mtrans.c' || echo './'`mtrans.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c mtrans.c -fPIC -DPIC -o .libs/libiml_la-mtrans.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c mtrans.c -o libiml_la-mtrans.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-nonsysolve.lo `test -f 'nonsysolve.c' || echo './'`nonsysolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c nonsysolve.c -fPIC -DPIC -o .libs/libiml_la-nonsysolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c nonsysolve.c -o libiml_la-nonsysolve.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-padiclift.lo `test -f 'padiclift.c' || echo './'`padiclift.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c padiclift.c -fPIC -DPIC -o .libs/libiml_la-padiclift.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c padiclift.c -o libiml_la-padiclift.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-reconsolu.lo `test -f 'reconsolu.c' || echo './'`reconsolu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c reconsolu.c -fPIC -DPIC -o .libs/libiml_la-reconsolu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c reconsolu.c -o libiml_la-reconsolu.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-RNSop.lo `test -f 'RNSop.c' || echo './'`RNSop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c RNSop.c -fPIC -DPIC -o .libs/libiml_la-RNSop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c RNSop.c -o libiml_la-RNSop.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c -o libiml_la-nullspace.lo `test -f 'nullspace.c' || echo './'`nullspace.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c nullspace.c -fPIC -DPIC -o .libs/libiml_la-nullspace.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -c nullspace.c -o libiml_la-nullspace.o >/dev/null 2>&1 /usr/bin/bash ../libtool --tag=CC --mode=link gcc -I///usr/include -I/tmp/SBo/sage-9.0/local/include -I. -O3 -g -version-info 1:1:1 -L/tmp/SBo/sage-9.0/local/lib -Wl,-rpath,/tmp/SBo/sage-9.0/local/lib -lm -o libiml.la -rpath /tmp/SBo/sage-9.0/local/lib libiml_la-basisop.lo libiml_la-certsolve.lo libiml_la-error.lo libiml_la-latreduce.lo libiml_la-memalloc.lo libiml_la-mtrans.lo libiml_la-nonsysolve.lo libiml_la-padiclift.lo libiml_la-reconsolu.lo libiml_la-RNSop.lo libiml_la-nullspace.lo -L///usr/lib -lgmp -L/tmp/SBo/sage-9.0/local/lib -lgmp -L/tmp/SBo/sage-9.0/local/lib -L/tmp/SBo/sage-9.0/local/lib -lopenblas libtool: link: gcc -shared -fPIC -DPIC .libs/libiml_la-basisop.o .libs/libiml_la-certsolve.o .libs/libiml_la-error.o .libs/libiml_la-latreduce.o .libs/libiml_la-memalloc.o .libs/libiml_la-mtrans.o .libs/libiml_la-nonsysolve.o .libs/libiml_la-padiclift.o .libs/libiml_la-reconsolu.o .libs/libiml_la-RNSop.o .libs/libiml_la-nullspace.o -L/tmp/SBo/sage-9.0/local/lib -lm -L///usr/lib /usr/lib/libgmp.so -lopenblas -O3 -Wl,-rpath -Wl,/tmp/SBo/sage-9.0/local/lib -Wl,-soname -Wl,libiml.so.0 -o .libs/libiml.so.0.1.1 /usr/lib64/gcc/x86_64-slackware-linux/5.5.0/../../../../x86_64-slackware-linux/bin/ld: skipping incompatible ///usr/lib/libm.so when searching for -lm /usr/lib64/gcc/x86_64-slackware-linux/5.5.0/../../../../x86_64-slackware-linux/bin/ld: skipping incompatible ///usr/lib/libm.a when searching for -lm /usr/lib/libgmp.so: error adding symbols: File in wrong format collect2: error: ld returned 1 exit status Makefile:373: recipe for target 'libiml.la' failed make[6]: *** [libiml.la] Error 1 make[6]: Leaving directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/src' Makefile:339: recipe for target 'all-recursive' failed make[5]: *** [all-recursive] Error 1 make[5]: Leaving directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2/src' Makefile:270: recipe for target 'all' failed make[4]: *** [all] Error 2 make[4]: Leaving directory '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2/src' ******************************************************************************** Error building iml-1.0.4p1.p2 ******************************************************************************** real 0m13.944s user 0m11.617s sys 0m1.113s ************************************************************************ Error installing package iml-1.0.4p1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /tmp/SBo/sage-9.0/logs/pkgs/iml-1.0.4p1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/tmp/SBo/sage-9.0/local/var/tmp/sage/build/iml-1.0.4p1.p2' && '/tmp/SBo/sage-9.0/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
