This is how I first got there.

Build sage 3.9 on Linux Mint 19.2

Start sage

notebook()

x,y,z=var('x,y,z')
u, v = var('u,v')
from sage.plot.plot3d.transform import rotate_arbitrary
from sage.plot.plot3d.shapes import Text
from sage.manifolds.utilities import set_axes_labels
from sage.plot.plot3d.shapes import Cylinder
c1=parametric_plot3d([v, u*v, (1-v^2)^(1/2) ], (u,0, 1), (v,0, 1), opacity=0.1, aspect_ratio=1)
cc1 = set_axes_labels(c1, 'x', 'y', 'z', color='red')
c2=parametric_plot3d([u*v, v, (1-v^2)^(1/2) ], (u,0, 1), (v,0, 1), opacity=0.1, aspect_ratio=1, color='red') c3=parametric_plot3d([0, u*v, (1-v^2)^(1/2) ], (u,0, 1), (v,0, 1), opacity=0.1, aspect_ratio=1, color='green') c4=parametric_plot3d([u*v, 0, (1-v^2)^(1/2) ], (u,0, 1), (v,0, 1), opacity=0.1, aspect_ratio=1, color='yellow') b=parametric_plot3d([u, v, 0 ], (u,0, 1), (v,0, 1), opacity=0.1, aspect_ratio=1, color='grey')
(cc1+c2+c3+c4+b).show(aspect_ratio=1 )

[Graphic shows up as usual]

Click the circle icon on the bottom left of the graphic

[The graphic goes horribly wrong]

I have tried with several browsers and various notebooks and different builds. It seems any browser and any 3d graphic will do.

Sage version 8.9 includes an updated jmol / jsmol version.

Às 12:16 de 15/10/19, Dima Pasechnik escreveu:
Could you please post concrete steps to reproduce the problem?

On Tue, Oct 15, 2019 at 11:09 AM Mikhail Malakhaltsev <mik...@gmail.com> wrote:
I have the same problem with notebook in Sage 8.9, browsers Vivaldi, 
GoogleChrome, sage built on opensuse Leap 15.0.

El lunes, 14 de octubre de 2019, 7:49:22 (UTC-5), João Palhoto Matos escribió:
I have found that activating a 3d jsmol animation in a sage 3.9 notebook is 
broken. Although initial preview is correct activating the animation leads to a 
graphic showing several small spheres (molecules?!). Reverting to version 3.8 
everything works. I build sage on Linux Mint 19.2.
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