Hello,
I am trying to install sage from source, and I ran into an error.
I am running mac OS version 10.13.4. I'm attaching the log file, it failed
to build
* package: setuptools-38.2.4.p0
and told me to post / email here. How should I proceed?
Best,
Sachi
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Cleaning up PYTHONPATH:
Old: "//Applications/sage-8.2/local"
New: "/Applications/sage-8.2/local"
Found local metadata for setuptools-38.2.4.p0
Using cached file //Applications/sage-8.2/upstream/setuptools-38.2.4.zip
setuptools-38.2.4.p0
====================================================
Setting up build directory for setuptools-38.2.4.p0
Finished extraction
Applying patches from ../patches...
Applying ../patches/easy_install_lock.patch
patching file setuptools/command/easy_install.py
Hunk #1 succeeded at 1584 (offset 138 lines).
Hunk #2 succeeded at 1622 with fuzz 1 (offset 138 lines).
Hunk #3 succeeded at 1641 with fuzz 2 (offset 131 lines).
****************************************************
Host system:
Darwin Sachis-MacBook-Pro.local 17.5.0 Darwin Kernel Version 17.5.0: Mon Mar 5
22:24:32 PST 2018; root:xnu-4570.51.1~1/RELEASE_X86_64 x86_64
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/Applications/sage-8.2/local/bin/../libexec/gcc/x86_64-apple-darwin17.5.0/7.2.0/lto-wrapper
Target: x86_64-apple-darwin17.5.0
Configured with: ../src/configure --prefix=//Applications/sage-8.2/local
--with-local-prefix=//Applications/sage-8.2/local
--with-gmp=//Applications/sage-8.2/local
--with-mpfr=//Applications/sage-8.2/local
--with-mpc=//Applications/sage-8.2/local --with-system-zlib --disable-multilib
--disable-nls --enable-languages=c,c++,fortran --disable-libitm
--with-build-config=bootstrap-debug --without-isl --without-cloog
Thread model: posix
gcc version 7.2.0 (GCC)
****************************************************
running install
running build
running build_py
creating build
creating build/lib
copying easy_install.py -> build/lib
creating build/lib/setuptools
copying setuptools/ssl_support.py -> build/lib/setuptools
copying setuptools/windows_support.py -> build/lib/setuptools
copying setuptools/package_index.py -> build/lib/setuptools
copying setuptools/archive_util.py -> build/lib/setuptools
copying setuptools/py36compat.py -> build/lib/setuptools
copying setuptools/config.py -> build/lib/setuptools
copying setuptools/version.py -> build/lib/setuptools
copying setuptools/py31compat.py -> build/lib/setuptools
copying setuptools/depends.py -> build/lib/setuptools
copying setuptools/py27compat.py -> build/lib/setuptools
copying setuptools/__init__.py -> build/lib/setuptools
copying setuptools/glob.py -> build/lib/setuptools
copying setuptools/sandbox.py -> build/lib/setuptools
copying setuptools/launch.py -> build/lib/setuptools
copying setuptools/extension.py -> build/lib/setuptools
copying setuptools/unicode_utils.py -> build/lib/setuptools
copying setuptools/monkey.py -> build/lib/setuptools
copying setuptools/pep425tags.py -> build/lib/setuptools
copying setuptools/build_meta.py -> build/lib/setuptools
copying setuptools/dep_util.py -> build/lib/setuptools
copying setuptools/site-patch.py -> build/lib/setuptools
copying setuptools/msvc.py -> build/lib/setuptools
copying setuptools/dist.py -> build/lib/setuptools
copying setuptools/lib2to3_ex.py -> build/lib/setuptools
copying setuptools/glibc.py -> build/lib/setuptools
copying setuptools/py33compat.py -> build/lib/setuptools
copying setuptools/wheel.py -> build/lib/setuptools
copying setuptools/namespaces.py -> build/lib/setuptools
creating build/lib/pkg_resources
copying pkg_resources/py31compat.py -> build/lib/pkg_resources
copying pkg_resources/__init__.py -> build/lib/pkg_resources
creating build/lib/setuptools/command
copying setuptools/command/bdist_egg.py -> build/lib/setuptools/command
copying setuptools/command/alias.py -> build/lib/setuptools/command
copying setuptools/command/py36compat.py -> build/lib/setuptools/command
copying setuptools/command/build_ext.py -> build/lib/setuptools/command
copying setuptools/command/easy_install.py -> build/lib/setuptools/command
copying setuptools/command/install_scripts.py -> build/lib/setuptools/command
copying setuptools/command/upload.py -> build/lib/setuptools/command
copying setuptools/command/register.py -> build/lib/setuptools/command
copying setuptools/command/bdist_wininst.py -> build/lib/setuptools/command
copying setuptools/command/dist_info.py -> build/lib/setuptools/command
copying setuptools/command/install_lib.py -> build/lib/setuptools/command
copying setuptools/command/upload_docs.py -> build/lib/setuptools/command
copying setuptools/command/build_py.py -> build/lib/setuptools/command
copying setuptools/command/__init__.py -> build/lib/setuptools/command
copying setuptools/command/sdist.py -> build/lib/setuptools/command
copying setuptools/command/test.py -> build/lib/setuptools/command
copying setuptools/command/saveopts.py -> build/lib/setuptools/command
copying setuptools/command/bdist_rpm.py -> build/lib/setuptools/command
copying setuptools/command/build_clib.py -> build/lib/setuptools/command
copying setuptools/command/egg_info.py -> build/lib/setuptools/command
copying setuptools/command/install.py -> build/lib/setuptools/command
copying setuptools/command/develop.py -> build/lib/setuptools/command
copying setuptools/command/rotate.py -> build/lib/setuptools/command
copying setuptools/command/install_egg_info.py -> build/lib/setuptools/command
copying setuptools/command/setopt.py -> build/lib/setuptools/command
creating build/lib/setuptools/extern
copying setuptools/extern/__init__.py -> build/lib/setuptools/extern
creating build/lib/pkg_resources/_vendor
copying pkg_resources/_vendor/__init__.py -> build/lib/pkg_resources/_vendor
copying pkg_resources/_vendor/appdirs.py -> build/lib/pkg_resources/_vendor
copying pkg_resources/_vendor/six.py -> build/lib/pkg_resources/_vendor
copying pkg_resources/_vendor/pyparsing.py -> build/lib/pkg_resources/_vendor
creating build/lib/pkg_resources/extern
copying pkg_resources/extern/__init__.py -> build/lib/pkg_resources/extern
creating build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/version.py ->
build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/__init__.py ->
build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/utils.py ->
build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/requirements.py ->
build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/_structures.py ->
build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/markers.py ->
build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/__about__.py ->
build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/_compat.py ->
build/lib/pkg_resources/_vendor/packaging
copying pkg_resources/_vendor/packaging/specifiers.py ->
build/lib/pkg_resources/_vendor/packaging
copying setuptools/script (dev).tmpl -> build/lib/setuptools
copying setuptools/script.tmpl -> build/lib/setuptools
copying setuptools/cli-64.exe -> build/lib/setuptools
copying setuptools/gui-64.exe -> build/lib/setuptools
copying setuptools/cli.exe -> build/lib/setuptools
copying setuptools/cli-32.exe -> build/lib/setuptools
copying setuptools/gui-32.exe -> build/lib/setuptools
copying setuptools/gui.exe -> build/lib/setuptools
copying setuptools/command/launcher manifest.xml -> build/lib/setuptools/command
running install_lib
copying build/lib/easy_install.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages
creating /Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/ssl_support.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/windows_support.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/package_index.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/archive_util.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/py36compat.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/config.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/version.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/py31compat.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/cli-64.exe ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/gui-64.exe ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/depends.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/py27compat.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/__init__.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/glob.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/sandbox.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/script.tmpl ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/launch.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/extension.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/unicode_utils.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/monkey.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/pep425tags.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/build_meta.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/cli.exe ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/dep_util.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
creating
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/bdist_egg.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/alias.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/py36compat.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/build_ext.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/easy_install.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/launcher manifest.xml ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/install_scripts.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/upload.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/register.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/bdist_wininst.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/dist_info.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/install_lib.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/upload_docs.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/build_py.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/__init__.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/sdist.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/test.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/saveopts.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/bdist_rpm.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/build_clib.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/egg_info.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/install.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/develop.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/rotate.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/install_egg_info.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/command/setopt.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/command
copying build/lib/setuptools/site-patch.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/msvc.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/cli-32.exe ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
creating
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/extern
copying build/lib/setuptools/extern/__init__.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools/extern
copying build/lib/setuptools/gui-32.exe ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/gui.exe ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/dist.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/lib2to3_ex.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/glibc.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/py33compat.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/wheel.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/namespaces.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
copying build/lib/setuptools/script (dev).tmpl ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/setuptools
creating /Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources
creating
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor
creating
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/version.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/__init__.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/utils.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/requirements.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/_structures.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/markers.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/__about__.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/_compat.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/packaging/specifiers.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor/packaging
copying build/lib/pkg_resources/_vendor/__init__.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor
copying build/lib/pkg_resources/_vendor/appdirs.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor
copying build/lib/pkg_resources/_vendor/six.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor
copying build/lib/pkg_resources/_vendor/pyparsing.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/_vendor
copying build/lib/pkg_resources/py31compat.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources
copying build/lib/pkg_resources/__init__.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources
creating
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/extern
copying build/lib/pkg_resources/extern/__init__.py ->
/Applications/sage-8.2/local/lib/python2.7/site-packages/pkg_resources/extern
Traceback (most recent call last):
File "setup.py", line 187, in <module>
dist = setuptools.setup(**setup_params)
File
"/Applications/sage-8.2/local/var/tmp/sage/build/setuptools-38.2.4.p0/src/setuptools/__init__.py",
line 129, in setup
return distutils.core.setup(**attrs)
File "//Applications/sage-8.2/local/lib/python2.7/distutils/core.py", line
151, in setup
dist.run_commands()
File "//Applications/sage-8.2/local/lib/python2.7/distutils/dist.py", line
953, in run_commands
self.run_command(cmd)
File "//Applications/sage-8.2/local/lib/python2.7/distutils/dist.py", line
972, in run_command
cmd_obj.run()
File
"/Applications/sage-8.2/local/var/tmp/sage/build/setuptools-38.2.4.p0/src/setuptools/command/install.py",
line 61, in run
return orig.install.run(self)
File
"//Applications/sage-8.2/local/lib/python2.7/distutils/command/install.py",
line 575, in run
self.run_command(cmd_name)
File "//Applications/sage-8.2/local/lib/python2.7/distutils/cmd.py", line
326, in run_command
self.distribution.run_command(command)
File "//Applications/sage-8.2/local/lib/python2.7/distutils/dist.py", line
972, in run_command
cmd_obj.run()
File
"/Applications/sage-8.2/local/var/tmp/sage/build/setuptools-38.2.4.p0/src/setuptools/command/install_lib.py",
line 15, in run
self.byte_compile(outfiles)
File
"//Applications/sage-8.2/local/lib/python2.7/distutils/command/install_lib.py",
line 138, in byte_compile
dry_run=self.dry_run)
File "//Applications/sage-8.2/local/lib/python2.7/distutils/util.py", line
454, in byte_compile
% (file, prefix))
ValueError: invalid prefix: filename
'/Applications/sage-8.2/local/lib/python2.7/site-packages/easy_install.py'
doesn't start with
'//Applications/sage-8.2/local/var/tmp/sage/build/setuptools-38.2.4.p0/inst'
********************************************************************************
Error building / installing setuptools for Python 2
********************************************************************************
real 0m0.419s
user 0m0.236s
sys 0m0.168s
************************************************************************
Error installing package setuptools-38.2.4.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the log file
//Applications/sage-8.2/logs/pkgs/setuptools-38.2.4.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
//Applications/sage-8.2/local/var/tmp/sage/build/setuptools-38.2.4.p0 and type
'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '//Applications/sage-8.2/local/var/tmp/sage/build/setuptools-38.2.4.p0'
&& '//Applications/sage-8.2/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
