Hello,
today I tried installing sage, I am running Ubuntu 17.10 and already have
anaconda installed, though I have not installed R before.
The sage installation worked well except for the R part, see attached log
file. I have tried opening sage and it works.
What to do?
Best regards,
James
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Found local metadata for r-3.4.3.p0
Using cached file /home/james/Downloads/sage-8.2/upstream/R-3.4.3.tar.gz
r-3.4.3.p0
====================================================
Setting up build directory for r-3.4.3.p0
Finished extraction
Applying patches from ../patches...
Applying ../patches/autoconf_verb_dash.patch
patching file configure
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patching file configure
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patching file configure.ac
patching file src/library/tools/R/install.R
Applying ../patches/hardcoded_dirs.patch
patching file src/scripts/Makefile.in
patching file src/scripts/R.sh.in
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patching file configure
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patching file m4/R.m4
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patching file src/include/GraphicsBase.h
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patching file m4/R.m4
Applying ../patches/parent_sig_handler.patch
patching file src/library/parallel/src/fork.c
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patching file src/scripts/Rcmd.in
****************************************************
Host system:
Linux majorana 4.13.0-41-generic #46-Ubuntu SMP Wed May 2 13:38:30 UTC 2018
x86_64 x86_64 x86_64 GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
7.2.0-8ubuntu3.2' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs
--enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr
--with-gcc-major-version-only --program-suffix=-7
--program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes
--with-default-libstdcxx-abi=new --enable-gnu-unique-object
--disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie
--with-system-zlib --with-target-system-zlib --enable-objc-gc=auto
--enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64
--with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic
--enable-offload-targets=nvptx-none --without-cuda-driver
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 7.2.0 (Ubuntu 7.2.0-8ubuntu3.2)
****************************************************
R_CONFIGURE_BLAS=--with-blas=-L/home/james/Downloads/sage-8.2/local/lib
-lopenblas
R_CONFIGURE_LAPACK=--with-lapack=-L/home/james/Downloads/sage-8.2/local/lib
-lopenblas
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checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory
checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
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config.status: executing libtool commands
config.status: executing stamp-h commands
R is now configured for x86_64-pc-linux-gnu
Source directory: .
Installation directory: /home/james/Downloads/sage-8.2/local
C compiler: gcc -g -O2
Fortran 77 compiler: gfortran -g -O2
Default C++ compiler: g++ -g -O2
C++98 compiler: g++ -std=gnu++98 -g -O2
C++11 compiler: g++ -std=gnu++11 -g -O2
C++14 compiler: g++ -g -O2
C++17 compiler: g++ -std=gnu++17 -g -O2
Fortran 90/95 compiler: gfortran -g -O2
Obj-C compiler:
Interfaces supported:
External libraries: readline, BLAS(OpenBLAS), LAPACK(generic), curl
Additional capabilities: PNG, JPEG, NLS
Options enabled: shared R library, R profiling
Capabilities skipped: TIFF, cairo, ICU
Options not enabled: shared BLAS, memory profiling
Recommended packages: yes
configure: WARNING: you cannot build info or HTML versions of the R manuals
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make[5]: Entering directory
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creating src/scripts/R.fe
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mkdir -p -- ../../bin
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make[5]: Entering directory
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mkdir -p -- ../../include
make[6]: Entering directory
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mkdir -p -- ../../../include/R_ext
make[6]: Leaving directory
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make[5]: Leaving directory
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make[5]: Entering directory
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make[6]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/extra/tre'
make[7]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[7]: Leaving directory
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make[7]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/extra/tre'
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c regerror.c -o regerror.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c regexec.c -o regexec.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-approx.c -o
tre-match-approx.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-backtrack.c -o
tre-match-backtrack.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-parallel.c -o
tre-match-parallel.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H
-fopenmp -fpic -g -O2 -fvisibility=hidden -c xmalloc.c -o xmalloc.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o
tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o
tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[7]: Leaving directory
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make[6]: Leaving directory
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make[5]: Leaving directory
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make[5]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[6]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/appl'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c integrate.c -o integrate.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c interv.c -o interv.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c maxcol.c -o maxcol.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c optim.c -o optim.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pretty.c -o pretty.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c uncmin.c -o uncmin.o
gfortran -fopenmp -fpic -g -O2 -c dchdc.f -o dchdc.o
gfortran -fopenmp -fpic -g -O2 -c dpbfa.f -o dpbfa.o
gfortran -fopenmp -fpic -g -O2 -c dpbsl.f -o dpbsl.o
gfortran -fopenmp -fpic -g -O2 -c dpoco.f -o dpoco.o
gfortran -fopenmp -fpic -g -O2 -c dpodi.f -o dpodi.o
gfortran -fopenmp -fpic -g -O2 -c dpofa.f -o dpofa.o
gfortran -fopenmp -fpic -g -O2 -c dposl.f -o dposl.o
gfortran -fopenmp -fpic -g -O2 -c dqrdc.f -o dqrdc.o
gfortran -fopenmp -fpic -g -O2 -c dqrdc2.f -o dqrdc2.o
gfortran -fopenmp -fpic -g -O2 -c dqrls.f -o dqrls.o
gfortran -fopenmp -fpic -g -O2 -c dqrsl.f -o dqrsl.o
gfortran -fopenmp -fpic -g -O2 -c dqrutl.f -o dqrutl.o
gfortran -fopenmp -fpic -g -O2 -c dsvdc.f -o dsvdc.o
gfortran -fopenmp -fpic -g -O2 -c dtrco.f -o dtrco.o
gfortran -fopenmp -fpic -g -O2 -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o
dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o
dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o
ranlib libappl.a
make[6]: Leaving directory
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make[5]: Leaving directory
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make[5]: Entering directory
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making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[6]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/nmath'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c mlutils.c -o mlutils.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c d1mach.c -o d1mach.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c i1mach.c -o i1mach.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c fmax2.c -o fmax2.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c fmin2.c -o fmin2.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c fprec.c -o fprec.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c fround.c -o fround.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c ftrunc.c -o ftrunc.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c sign.c -o sign.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c fsign.c -o fsign.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c imax2.c -o imax2.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c imin2.c -o imin2.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c chebyshev.c -o chebyshev.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c log1p.c -o log1p.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c expm1.c -o expm1.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c lgammacor.c -o lgammacor.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c gammalims.c -o gammalims.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c stirlerr.c -o stirlerr.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c bd0.c -o bd0.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c gamma.c -o gamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c lgamma.c -o lgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c beta.c -o beta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c lbeta.c -o lbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c polygamma.c -o polygamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c cospi.c -o cospi.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c bessel_i.c -o bessel_i.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c bessel_j.c -o bessel_j.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c bessel_k.c -o bessel_k.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c bessel_y.c -o bessel_y.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c choose.c -o choose.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c snorm.c -o snorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c sexp.c -o sexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dgamma.c -o dgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pgamma.c -o pgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qgamma.c -o qgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rgamma.c -o rgamma.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dbeta.c -o dbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pbeta.c -o pbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qbeta.c -o qbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rbeta.c -o rbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dunif.c -o dunif.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c punif.c -o punif.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qunif.c -o qunif.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c runif.c -o runif.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dnorm.c -o dnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pnorm.c -o pnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qnorm.c -o qnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rnorm.c -o rnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dlnorm.c -o dlnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c plnorm.c -o plnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qlnorm.c -o qlnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rlnorm.c -o rlnorm.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c df.c -o df.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pf.c -o pf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qf.c -o qf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rf.c -o rf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dnf.c -o dnf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dt.c -o dt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pt.c -o pt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qt.c -o qt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rt.c -o rt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dnt.c -o dnt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dchisq.c -o dchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pchisq.c -o pchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qchisq.c -o qchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rchisq.c -o rchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rnchisq.c -o rnchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dbinom.c -o dbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pbinom.c -o pbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qbinom.c -o qbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rbinom.c -o rbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rmultinom.c -o rmultinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dcauchy.c -o dcauchy.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pcauchy.c -o pcauchy.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qcauchy.c -o qcauchy.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rcauchy.c -o rcauchy.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dexp.c -o dexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pexp.c -o pexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qexp.c -o qexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rexp.c -o rexp.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dgeom.c -o dgeom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pgeom.c -o pgeom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qgeom.c -o qgeom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rgeom.c -o rgeom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dhyper.c -o dhyper.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c phyper.c -o phyper.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qhyper.c -o qhyper.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rhyper.c -o rhyper.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dnbinom.c -o dnbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pnbinom.c -o pnbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qnbinom.c -o qnbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rnbinom.c -o rnbinom.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dpois.c -o dpois.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c ppois.c -o ppois.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qpois.c -o qpois.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rpois.c -o rpois.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dweibull.c -o dweibull.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pweibull.c -o pweibull.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qweibull.c -o qweibull.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rweibull.c -o rweibull.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dlogis.c -o dlogis.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c plogis.c -o plogis.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qlogis.c -o qlogis.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rlogis.c -o rlogis.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dnchisq.c -o dnchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pnchisq.c -o pnchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qnchisq.c -o qnchisq.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dnbeta.c -o dnbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pnbeta.c -o pnbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qnbeta.c -o qnbeta.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pnf.c -o pnf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c pnt.c -o pnt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qnf.c -o qnf.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qnt.c -o qnt.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c ptukey.c -o ptukey.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qtukey.c -o qtukey.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c toms708.c -o toms708.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c wilcox.c -o wilcox.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o
ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o
gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o
polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o
snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o
rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o
dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o
rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o
qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o
pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o
rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o
rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o
rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o
qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[6]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/nmath'
make[5]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/nmath'
make[5]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[6]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/unix'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c Rembedded.c -o Rembedded.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dynload.c -o dynload.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c system.c -o system.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c sys-unix.c -o sys-unix.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c sys-std.c -o sys-std.o
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[6]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/unix'
make[6]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/unix'
gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2
-L/home/james/Downloads/sage-8.2/local/lib
-Wl,-rpath,/home/james/Downloads/sage-8.2/local/lib
-DR_HOME='"/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src"'
\
-o Rscript ./Rscript.c
make[6]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/unix'
make[5]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/unix'
make[5]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[6]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/main'
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c CommandLineArgs.c -o CommandLineArgs.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c Rdynload.c -o Rdynload.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c Renviron.c -o Renviron.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c RNG.c -o RNG.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c agrep.c -o agrep.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c apply.c -o apply.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c arithmetic.c -o arithmetic.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c array.c -o array.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c attrib.c -o attrib.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c bind.c -o bind.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c builtin.c -o builtin.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c character.c -o character.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c coerce.c -o coerce.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c colors.c -o colors.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c complex.c -o complex.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c connections.c -o connections.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c context.c -o context.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c cum.c -o cum.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dcf.c -o dcf.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c datetime.c -o datetime.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c debug.c -o debug.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c deparse.c -o deparse.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c devices.c -o devices.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dotcode.c -o dotcode.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dounzip.c -o dounzip.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c dstruct.c -o dstruct.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c duplicate.c -o duplicate.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c edit.c -o edit.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c engine.c -o engine.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c envir.c -o envir.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c errors.c -o errors.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c eval.c -o eval.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c format.c -o format.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c gevents.c -o gevents.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c gram.c -o gram.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c gram-ex.c -o gram-ex.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c graphics.c -o graphics.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c grep.c -o grep.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c identical.c -o identical.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c inlined.c -o inlined.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c inspect.c -o inspect.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c internet.c -o internet.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c iosupport.c -o iosupport.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c lapack.c -o lapack.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c list.c -o list.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c localecharset.c -o localecharset.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c logic.c -o logic.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c main.c -o main.o
main.c: In function 'dummy_ii':
main.c:1669:12: warning: function returns address of local variable
[-Wreturn-local-addr]
return (uintptr_t) ⅈ
^~~~~~~~~~~~~~~
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c mapply.c -o mapply.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c match.c -o match.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c memory.c -o memory.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c names.c -o names.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c objects.c -o objects.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c options.c -o options.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c paste.c -o paste.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c platform.c -o platform.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c plot.c -o plot.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c plot3d.c -o plot3d.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c plotmath.c -o plotmath.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c print.c -o print.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c printarray.c -o printarray.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c printvector.c -o printvector.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c printutils.c -o printutils.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c qsort.c -o qsort.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c radixsort.c -o radixsort.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c random.c -o random.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c raw.c -o raw.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c registration.c -o registration.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c relop.c -o relop.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c rlocale.c -o rlocale.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c saveload.c -o saveload.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c scan.c -o scan.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c seq.c -o seq.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c serialize.c -o serialize.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c sort.c -o sort.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c source.c -o source.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c split.c -o split.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c sprintf.c -o sprintf.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c startup.c -o startup.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c subassign.c -o subassign.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c subscript.c -o subscript.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c subset.c -o subset.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c summary.c -o summary.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c sysutils.c -o sysutils.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c times.c -o times.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c unique.c -o unique.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c util.c -o util.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c version.c -o version.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c g_alab_her.c -o g_alab_her.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c g_cntrlify.c -o g_cntrlify.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c g_fontdb.c -o g_fontdb.o
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c g_her_glyph.c -o g_her_glyph.o
gfortran -fopenmp -fpic -g -O2 -c xxxpr.f -o xxxpr.o
gcc -shared -fopenmp -L/home/james/Downloads/sage-8.2/local/lib
-Wl,-rpath,/home/james/Downloads/sage-8.2/local/lib -o libR.so
CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o
array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o
connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o
dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o
eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o
inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o
logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o
platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o
printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o
rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o
startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o
unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o
xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a
-L/home/james/Downloads/sage-8.2/local/lib -lopenblas -lgfortran -lm -lquadmath
-lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm
make[7]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/main'
mkdir -p --
/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/bin/exec
mkdir -p --
/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/lib
make[7]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/main'
make[6]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/main'
make[6]: Entering directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/main'
gcc -I../../src/extra -I. -I../../src/include -I../../src/include
-I/home/james/anaconda2/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -c Rmain.c -o Rmain.o
gcc -Wl,--export-dynamic -fopenmp -L../../lib
-L/home/james/Downloads/sage-8.2/local/lib
-Wl,-rpath,/home/james/Downloads/sage-8.2/local/lib -o R.bin Rmain.o -lR
../../lib/libR.so: undefined reference to `libiconv'
../../lib/libR.so: undefined reference to `libiconv_close'
../../lib/libR.so: undefined reference to `_libiconv_version'
../../lib/libR.so: undefined reference to `libiconv_open'
collect2: error: ld returned 1 exit status
Makefile:145: recipe for target 'R.bin' failed
make[6]: *** [R.bin] Error 1
make[6]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/main'
Makefile:135: recipe for target 'R' failed
make[5]: *** [R] Error 2
make[5]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src/main'
Makefile:28: recipe for target 'R' failed
make[4]: *** [R] Error 1
make[4]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src/src'
Makefile:60: recipe for target 'R' failed
make[3]: *** [R] Error 1
make[3]: Leaving directory
'/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0/src'
Error building R.
real 1m13.992s
user 1m6.879s
sys 0m7.981s
************************************************************************
Error installing package r-3.4.3.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the log file
/home/james/Downloads/sage-8.2/logs/pkgs/r-3.4.3.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0 and type
'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/james/Downloads/sage-8.2/local/var/tmp/sage/build/r-3.4.3.p0' &&
'/home/james/Downloads/sage-8.2/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
