Hi Sage devs, I'm trying to build Sage 8.1 on RHEL 7.5 and am getting some errors with pyzmq. I'm unsure which errors are causing the issue. I've tried using the system gcc, and gcc/7.3, but the errors were consistent. Please see attached.
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Found local metadata for pyzmq-16.0.0 Using cached file /media/software-disk/sources/sagemath/8.1/sage-8.1/upstream/pyzmq-16.0.0.tar.gz pyzmq-16.0.0 ==================================================== Setting up build directory for pyzmq-16.0.0 Finished extraction No patch files found in ../patches **************************************************** Host system: Linux cbc-nc212917.asc.ohio-state.edu 3.10.0-862.el7.x86_64 #1 SMP Wed Mar 21 18:14:51 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/media/software-disk/modules/gcc/4.8/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.8.5/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/opt/modules/gcc/4.8 Thread model: posix gcc version 4.8.5 (GCC) **************************************************** Installing pyzmq-16.0.0 Installing package pyzmq using pip2 Ignoring indexes: https://pypi.python.org/simple Processing /media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Running setup.py (path:/tmp/pip-prPsuE-build/setup.py) egg_info for package from file:///media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Running command python setup.py egg_info running egg_info creating pip-egg-info/pyzmq.egg-info writing pip-egg-info/pyzmq.egg-info/PKG-INFO writing top-level names to pip-egg-info/pyzmq.egg-info/top_level.txt writing dependency_links to pip-egg-info/pyzmq.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'tox.ini' no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/gh-pages' warning: no previously-included files found matching 'bundled/zeromq/src/Makefile*' warning: no previously-included files found matching 'bundled/zeromq/src/platform.hpp' warning: no previously-included files found matching 'zmq/libzmq*' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '.mailmap' found anywhere in distribution warning: no previously-included files matching 'Makefile.am' found anywhere in distribution warning: no previously-included files matching 'Makefile.in' found anywhere in distribution writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' Source in /tmp/pip-prPsuE-build has version 16.0.0, which satisfies requirement pyzmq==16.0.0 from file:///media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Installing collected packages: pyzmq Running setup.py install for pyzmq: started Running command /opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-prPsuE-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-0WpNeQ-record/install-record.txt --single-version-externally-managed --compile running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/zmq copying zmq/decorators.py -> build/lib.linux-x86_64-2.7/zmq copying zmq/error.py -> build/lib.linux-x86_64-2.7/zmq copying zmq/__init__.py -> build/lib.linux-x86_64-2.7/zmq creating build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/forward.py -> build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/tunnel.py -> build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/__init__.py -> build/lib.linux-x86_64-2.7/zmq/ssh creating build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/future.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/stack_context.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/util.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/concurrent.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/log.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/windows.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/posix.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/auto.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/interface.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/common.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform creating build/lib.linux-x86_64-2.7/zmq/log copying zmq/log/handlers.py -> build/lib.linux-x86_64-2.7/zmq/log copying zmq/log/__init__.py -> build/lib.linux-x86_64-2.7/zmq/log creating build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/monitoredqueuedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/proxydevice.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/monitoredqueue.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/__init__.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/basedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices creating build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/socket.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/attrsettr.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/context.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/frame.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/poll.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/tracker.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/version.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/constants.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/stopwatch.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/__init__.py -> build/lib.linux-x86_64-2.7/zmq/sugar creating build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/constant_names.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/jsonapi.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/garbage.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/win32.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/interop.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/strtypes.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/sixcerpt.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/__init__.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/monitor.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/z85.py -> build/lib.linux-x86_64-2.7/zmq/utils creating build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/poll.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/device.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/core.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green creating build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop creating build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_pair.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_message.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_ioloop.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_z85.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_retry_eintr.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_decorators.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_future.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_reqrep.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_version.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_includes.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_etc.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_context.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_error.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_cffi_backend.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_socket.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_win32_shim.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_monqueue.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_multipart.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_ssh.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_constants.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_auth.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_imports.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_log.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_poll.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_pubsub.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/__init__.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_monitor.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_security.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_device.py -> build/lib.linux-x86_64-2.7/zmq/tests creating build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/certs.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/base.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/thread.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/__init__.py -> build/lib.linux-x86_64-2.7/zmq/auth creating build/lib.linux-x86_64-2.7/zmq/backend copying zmq/backend/select.py -> build/lib.linux-x86_64-2.7/zmq/backend copying zmq/backend/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend creating build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend/cython creating build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/socket.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/context.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/error.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/utils.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/message.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/constants.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/devices.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_poll.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_cffi.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/devices/monitoredqueue.pxd -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/utils/buffers.pxd -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/zmq_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/pyversion_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/ipcmaxlen.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/getpid_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/zmq_constants.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/backend/cython/message.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/checkrc.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/context.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/libzmq.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/socket.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/constants.pxi -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/constant_enums.pxi -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cffi/_cdefs.h -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_verify.c -> build/lib.linux-x86_64-2.7/zmq/backend/cffi running build_ext running configure {'libraries': ['zmq'], 'extra_link_args': [], 'runtime_library_dirs': [], 'library_dirs': ['/opt/modules/sagemath/8.1/lib'], 'include_dirs': ['/opt/modules/sagemath/8.1/include']} gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -I/opt/modules/sagemath/8.1/include -c build/temp.linux-x86_64-2.7/scratch/check_sys_un.c -o build/temp.linux-x86_64-2.7/scratch/check_sys_un.o gcc build/temp.linux-x86_64-2.7/scratch/check_sys_un.o -L/opt/modules/sagemath/8.1/lib -Wl,-R/opt/modules/sagemath/8.1/lib -o build/temp.linux-x86_64-2.7/scratch/check_sys_un Warning: No sys/un.h, IPC_PATH_MAX_LEN will be undefined: [Errno 13] Permission denied ************************************************ Configure: Autodetecting ZMQ settings... Custom ZMQ dir: /opt/modules/sagemath/8.1 creating build/temp.linux-x86_64-2.7/scratch/tmp cc -c /tmp/timer_createBxGDlV.c -o build/temp.linux-x86_64-2.7/scratch/tmp/timer_createBxGDlV.o cc build/temp.linux-x86_64-2.7/scratch/tmp/timer_createBxGDlV.o -o build/temp.linux-x86_64-2.7/scratch/a.out build/temp.linux-x86_64-2.7/scratch/tmp/timer_createBxGDlV.o: In function `main': timer_createBxGDlV.c:(.text+0x15): undefined reference to `timer_create' collect2: error: ld returned 1 exit status gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -I/opt/modules/sagemath/8.1/include -Izmq/utils -Izmq/backend/cython -Izmq/devices -c build/temp.linux-x86_64-2.7/scratch/vers.c -o build/temp.linux-x86_64-2.7/scratch/vers.o gcc build/temp.linux-x86_64-2.7/scratch/vers.o -L/opt/modules/sagemath/8.1/lib -Wl,-R/opt/modules/sagemath/8.1/lib -lzmq -lrt -o build/temp.linux-x86_64-2.7/scratch/vers error: [Errno 13] Permission denied Fatal: Falling back on bundled libzmq, but config has explicitly prohibited building the libzmq extension. Running setup.py install for pyzmq: finished with status 'error' Cleaning up... Removing source in /tmp/pip-prPsuE-build Command "/opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-prPsuE-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-0WpNeQ-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-prPsuE-build/ Exception information: Traceback (most recent call last): File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/basecommand.py", line 215, in main status = self.run(options, args) File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/commands/install.py", line 342, in run prefix=options.prefix_path, File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/req/req_set.py", line 784, in install **kwargs File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/req/req_install.py", line 878, in install spinner=spinner, File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/utils/__init__.py", line 707, in call_subprocess % (command_desc, proc.returncode, cwd)) InstallationError: Command "/opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-prPsuE-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-0WpNeQ-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-prPsuE-build/ Error: installing with pip2 failed ******************************************************************************** Error installing pyzmq-16.0.0 ******************************************************************************** real 0m1.382s user 0m1.089s sys 0m0.248s ************************************************************************ Error installing package pyzmq-16.0.0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /media/software-disk/sources/sagemath/8.1/sage-8.1/logs/pkgs/pyzmq-16.0.0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /opt/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/opt/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0' && '/media/software-disk/sources/sagemath/8.1/sage-8.1/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for pyzmq-16.0.0 Using cached file /media/software-disk/sources/sagemath/8.1/sage-8.1/upstream/pyzmq-16.0.0.tar.gz pyzmq-16.0.0 ==================================================== Setting up build directory for pyzmq-16.0.0 Finished extraction No patch files found in ../patches **************************************************** Host system: Linux cbc-nc212917.asc.ohio-state.edu 3.10.0-862.el7.x86_64 #1 SMP Wed Mar 21 18:14:51 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/media/software-disk/modules/gcc/4.8/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.8.5/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/opt/modules/gcc/4.8 Thread model: posix gcc version 4.8.5 (GCC) **************************************************** Installing pyzmq-16.0.0 Installing package pyzmq using pip2 Ignoring indexes: https://pypi.python.org/simple Processing /media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Running setup.py (path:/tmp/pip-uA2xQU-build/setup.py) egg_info for package from file:///media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Running command python setup.py egg_info running egg_info creating pip-egg-info/pyzmq.egg-info writing pip-egg-info/pyzmq.egg-info/PKG-INFO writing top-level names to pip-egg-info/pyzmq.egg-info/top_level.txt writing dependency_links to pip-egg-info/pyzmq.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'tox.ini' no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/gh-pages' warning: no previously-included files found matching 'bundled/zeromq/src/Makefile*' warning: no previously-included files found matching 'bundled/zeromq/src/platform.hpp' warning: no previously-included files found matching 'zmq/libzmq*' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '.mailmap' found anywhere in distribution warning: no previously-included files matching 'Makefile.am' found anywhere in distribution warning: no previously-included files matching 'Makefile.in' found anywhere in distribution writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' Source in /tmp/pip-uA2xQU-build has version 16.0.0, which satisfies requirement pyzmq==16.0.0 from file:///media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Installing collected packages: pyzmq Running setup.py install for pyzmq: started Running command /opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-uA2xQU-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-SKMnrw-record/install-record.txt --single-version-externally-managed --compile running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/zmq copying zmq/decorators.py -> build/lib.linux-x86_64-2.7/zmq copying zmq/error.py -> build/lib.linux-x86_64-2.7/zmq copying zmq/__init__.py -> build/lib.linux-x86_64-2.7/zmq creating build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/forward.py -> build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/tunnel.py -> build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/__init__.py -> build/lib.linux-x86_64-2.7/zmq/ssh creating build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/future.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/stack_context.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/util.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/concurrent.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/log.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/windows.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/posix.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/auto.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/interface.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/common.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform creating build/lib.linux-x86_64-2.7/zmq/log copying zmq/log/handlers.py -> build/lib.linux-x86_64-2.7/zmq/log copying zmq/log/__init__.py -> build/lib.linux-x86_64-2.7/zmq/log creating build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/monitoredqueuedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/proxydevice.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/monitoredqueue.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/__init__.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/basedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices creating build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/socket.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/attrsettr.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/context.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/frame.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/poll.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/tracker.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/version.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/constants.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/stopwatch.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/__init__.py -> build/lib.linux-x86_64-2.7/zmq/sugar creating build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/constant_names.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/jsonapi.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/garbage.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/win32.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/interop.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/strtypes.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/sixcerpt.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/__init__.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/monitor.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/z85.py -> build/lib.linux-x86_64-2.7/zmq/utils creating build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/poll.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/device.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/core.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green creating build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop creating build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_pair.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_message.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_ioloop.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_z85.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_retry_eintr.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_decorators.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_future.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_reqrep.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_version.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_includes.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_etc.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_context.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_error.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_cffi_backend.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_socket.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_win32_shim.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_monqueue.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_multipart.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_ssh.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_constants.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_auth.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_imports.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_log.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_poll.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_pubsub.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/__init__.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_monitor.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_security.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_device.py -> build/lib.linux-x86_64-2.7/zmq/tests creating build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/certs.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/base.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/thread.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/__init__.py -> build/lib.linux-x86_64-2.7/zmq/auth creating build/lib.linux-x86_64-2.7/zmq/backend copying zmq/backend/select.py -> build/lib.linux-x86_64-2.7/zmq/backend copying zmq/backend/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend creating build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend/cython creating build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/socket.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/context.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/error.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/utils.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/message.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/constants.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/devices.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_poll.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_cffi.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/devices/monitoredqueue.pxd -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/utils/buffers.pxd -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/zmq_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/pyversion_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/ipcmaxlen.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/getpid_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/zmq_constants.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/backend/cython/message.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/checkrc.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/context.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/libzmq.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/socket.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/constants.pxi -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/constant_enums.pxi -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cffi/_cdefs.h -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_verify.c -> build/lib.linux-x86_64-2.7/zmq/backend/cffi running build_ext running configure {'libraries': ['zmq'], 'extra_link_args': [], 'runtime_library_dirs': [], 'library_dirs': ['/opt/modules/sagemath/8.1/lib'], 'include_dirs': ['/opt/modules/sagemath/8.1/include']} gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -I/opt/modules/sagemath/8.1/include -c build/temp.linux-x86_64-2.7/scratch/check_sys_un.c -o build/temp.linux-x86_64-2.7/scratch/check_sys_un.o gcc build/temp.linux-x86_64-2.7/scratch/check_sys_un.o -L/opt/modules/sagemath/8.1/lib -Wl,-R/opt/modules/sagemath/8.1/lib -o build/temp.linux-x86_64-2.7/scratch/check_sys_un Warning: No sys/un.h, IPC_PATH_MAX_LEN will be undefined: [Errno 13] Permission denied ************************************************ Configure: Autodetecting ZMQ settings... Custom ZMQ dir: /opt/modules/sagemath/8.1 creating build/temp.linux-x86_64-2.7/scratch/tmp cc -c /tmp/timer_createib0qV6.c -o build/temp.linux-x86_64-2.7/scratch/tmp/timer_createib0qV6.o cc build/temp.linux-x86_64-2.7/scratch/tmp/timer_createib0qV6.o -o build/temp.linux-x86_64-2.7/scratch/a.out build/temp.linux-x86_64-2.7/scratch/tmp/timer_createib0qV6.o: In function `main': timer_createib0qV6.c:(.text+0x15): undefined reference to `timer_create' collect2: error: ld returned 1 exit status gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -I/opt/modules/sagemath/8.1/include -Izmq/utils -Izmq/backend/cython -Izmq/devices -c build/temp.linux-x86_64-2.7/scratch/vers.c -o build/temp.linux-x86_64-2.7/scratch/vers.o gcc build/temp.linux-x86_64-2.7/scratch/vers.o -L/opt/modules/sagemath/8.1/lib -Wl,-R/opt/modules/sagemath/8.1/lib -lzmq -lrt -o build/temp.linux-x86_64-2.7/scratch/vers error: [Errno 13] Permission denied Fatal: Falling back on bundled libzmq, but config has explicitly prohibited building the libzmq extension. Running setup.py install for pyzmq: finished with status 'error' Cleaning up... Removing source in /tmp/pip-uA2xQU-build Command "/opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-uA2xQU-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-SKMnrw-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-uA2xQU-build/ Exception information: Traceback (most recent call last): File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/basecommand.py", line 215, in main status = self.run(options, args) File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/commands/install.py", line 342, in run prefix=options.prefix_path, File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/req/req_set.py", line 784, in install **kwargs File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/req/req_install.py", line 878, in install spinner=spinner, File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/utils/__init__.py", line 707, in call_subprocess % (command_desc, proc.returncode, cwd)) InstallationError: Command "/opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-uA2xQU-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-SKMnrw-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-uA2xQU-build/ Error: installing with pip2 failed ******************************************************************************** Error installing pyzmq-16.0.0 ******************************************************************************** real 0m1.400s user 0m1.073s sys 0m0.312s ************************************************************************ Error installing package pyzmq-16.0.0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /media/software-disk/sources/sagemath/8.1/sage-8.1/logs/pkgs/pyzmq-16.0.0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /opt/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/opt/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0' && '/media/software-disk/sources/sagemath/8.1/sage-8.1/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for pyzmq-16.0.0 Using cached file /media/software-disk/sources/sagemath/8.1/sage-8.1/upstream/pyzmq-16.0.0.tar.gz pyzmq-16.0.0 ==================================================== Setting up build directory for pyzmq-16.0.0 Finished extraction No patch files found in ../patches **************************************************** Host system: Linux cbc-nc212917.asc.ohio-state.edu 3.10.0-862.el7.x86_64 #1 SMP Wed Mar 21 18:14:51 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/media/software-disk/modules/gcc/4.8/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.8.5/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/opt/modules/gcc/4.8 Thread model: posix gcc version 4.8.5 (GCC) **************************************************** Installing pyzmq-16.0.0 Installing package pyzmq using pip2 Ignoring indexes: https://pypi.python.org/simple Processing /media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Running setup.py (path:/tmp/pip-8OYxjy-build/setup.py) egg_info for package from file:///media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Running command python setup.py egg_info running egg_info creating pip-egg-info/pyzmq.egg-info writing pip-egg-info/pyzmq.egg-info/PKG-INFO writing top-level names to pip-egg-info/pyzmq.egg-info/top_level.txt writing dependency_links to pip-egg-info/pyzmq.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'tox.ini' no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/gh-pages' warning: no previously-included files found matching 'bundled/zeromq/src/Makefile*' warning: no previously-included files found matching 'bundled/zeromq/src/platform.hpp' warning: no previously-included files found matching 'zmq/libzmq*' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '.mailmap' found anywhere in distribution warning: no previously-included files matching 'Makefile.am' found anywhere in distribution warning: no previously-included files matching 'Makefile.in' found anywhere in distribution writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' Source in /tmp/pip-8OYxjy-build has version 16.0.0, which satisfies requirement pyzmq==16.0.0 from file:///media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Installing collected packages: pyzmq Running setup.py install for pyzmq: started Running command /opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-8OYxjy-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-XeV0If-record/install-record.txt --single-version-externally-managed --compile running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/zmq copying zmq/decorators.py -> build/lib.linux-x86_64-2.7/zmq copying zmq/error.py -> build/lib.linux-x86_64-2.7/zmq copying zmq/__init__.py -> build/lib.linux-x86_64-2.7/zmq creating build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/forward.py -> build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/tunnel.py -> build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/__init__.py -> build/lib.linux-x86_64-2.7/zmq/ssh creating build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/future.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/stack_context.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/util.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/concurrent.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/log.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/windows.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/posix.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/auto.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/interface.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/common.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform creating build/lib.linux-x86_64-2.7/zmq/log copying zmq/log/handlers.py -> build/lib.linux-x86_64-2.7/zmq/log copying zmq/log/__init__.py -> build/lib.linux-x86_64-2.7/zmq/log creating build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/monitoredqueuedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/proxydevice.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/monitoredqueue.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/__init__.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/basedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices creating build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/socket.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/attrsettr.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/context.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/frame.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/poll.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/tracker.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/version.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/constants.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/stopwatch.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/__init__.py -> build/lib.linux-x86_64-2.7/zmq/sugar creating build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/constant_names.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/jsonapi.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/garbage.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/win32.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/interop.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/strtypes.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/sixcerpt.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/__init__.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/monitor.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/z85.py -> build/lib.linux-x86_64-2.7/zmq/utils creating build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/poll.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/device.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/core.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green creating build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop creating build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_pair.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_message.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_ioloop.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_z85.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_retry_eintr.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_decorators.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_future.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_reqrep.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_version.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_includes.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_etc.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_context.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_error.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_cffi_backend.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_socket.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_win32_shim.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_monqueue.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_multipart.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_ssh.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_constants.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_auth.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_imports.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_log.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_poll.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_pubsub.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/__init__.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_monitor.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_security.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_device.py -> build/lib.linux-x86_64-2.7/zmq/tests creating build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/certs.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/base.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/thread.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/__init__.py -> build/lib.linux-x86_64-2.7/zmq/auth creating build/lib.linux-x86_64-2.7/zmq/backend copying zmq/backend/select.py -> build/lib.linux-x86_64-2.7/zmq/backend copying zmq/backend/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend creating build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend/cython creating build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/socket.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/context.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/error.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/utils.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/message.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/constants.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/devices.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_poll.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_cffi.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/devices/monitoredqueue.pxd -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/utils/buffers.pxd -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/zmq_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/pyversion_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/ipcmaxlen.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/getpid_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/zmq_constants.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/backend/cython/message.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/checkrc.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/context.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/libzmq.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/socket.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/constants.pxi -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/constant_enums.pxi -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cffi/_cdefs.h -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_verify.c -> build/lib.linux-x86_64-2.7/zmq/backend/cffi running build_ext running configure {'libraries': ['zmq'], 'extra_link_args': [], 'runtime_library_dirs': [], 'library_dirs': ['/opt/modules/sagemath/8.1/lib'], 'include_dirs': ['/opt/modules/sagemath/8.1/include']} gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -I/opt/modules/sagemath/8.1/include -c build/temp.linux-x86_64-2.7/scratch/check_sys_un.c -o build/temp.linux-x86_64-2.7/scratch/check_sys_un.o gcc build/temp.linux-x86_64-2.7/scratch/check_sys_un.o -L/opt/modules/sagemath/8.1/lib -Wl,-R/opt/modules/sagemath/8.1/lib -o build/temp.linux-x86_64-2.7/scratch/check_sys_un Warning: No sys/un.h, IPC_PATH_MAX_LEN will be undefined: [Errno 13] Permission denied ************************************************ Configure: Autodetecting ZMQ settings... Custom ZMQ dir: /opt/modules/sagemath/8.1 creating build/temp.linux-x86_64-2.7/scratch/tmp cc -c /tmp/timer_createcjxjOt.c -o build/temp.linux-x86_64-2.7/scratch/tmp/timer_createcjxjOt.o cc build/temp.linux-x86_64-2.7/scratch/tmp/timer_createcjxjOt.o -o build/temp.linux-x86_64-2.7/scratch/a.out build/temp.linux-x86_64-2.7/scratch/tmp/timer_createcjxjOt.o: In function `main': timer_createcjxjOt.c:(.text+0x15): undefined reference to `timer_create' collect2: error: ld returned 1 exit status gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -I/opt/modules/sagemath/8.1/include -Izmq/utils -Izmq/backend/cython -Izmq/devices -c build/temp.linux-x86_64-2.7/scratch/vers.c -o build/temp.linux-x86_64-2.7/scratch/vers.o gcc build/temp.linux-x86_64-2.7/scratch/vers.o -L/opt/modules/sagemath/8.1/lib -Wl,-R/opt/modules/sagemath/8.1/lib -lzmq -lrt -o build/temp.linux-x86_64-2.7/scratch/vers error: [Errno 13] Permission denied Fatal: Falling back on bundled libzmq, but config has explicitly prohibited building the libzmq extension. Running setup.py install for pyzmq: finished with status 'error' Cleaning up... Removing source in /tmp/pip-8OYxjy-build Command "/opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-8OYxjy-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-XeV0If-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-8OYxjy-build/ Exception information: Traceback (most recent call last): File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/basecommand.py", line 215, in main status = self.run(options, args) File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/commands/install.py", line 342, in run prefix=options.prefix_path, File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/req/req_set.py", line 784, in install **kwargs File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/req/req_install.py", line 878, in install spinner=spinner, File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/utils/__init__.py", line 707, in call_subprocess % (command_desc, proc.returncode, cwd)) InstallationError: Command "/opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-8OYxjy-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-XeV0If-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-8OYxjy-build/ Error: installing with pip2 failed ******************************************************************************** Error installing pyzmq-16.0.0 ******************************************************************************** real 0m1.396s user 0m1.107s sys 0m0.280s ************************************************************************ Error installing package pyzmq-16.0.0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /media/software-disk/sources/sagemath/8.1/sage-8.1/logs/pkgs/pyzmq-16.0.0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /opt/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/opt/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0' && '/media/software-disk/sources/sagemath/8.1/sage-8.1/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for pyzmq-16.0.0 Using cached file /media/software-disk/sources/sagemath/8.1/sage-8.1/upstream/pyzmq-16.0.0.tar.gz pyzmq-16.0.0 ==================================================== Setting up build directory for pyzmq-16.0.0 Finished extraction No patch files found in ../patches **************************************************** Host system: Linux cbc-nc212917.asc.ohio-state.edu 3.10.0-862.el7.x86_64 #1 SMP Wed Mar 21 18:14:51 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/media/software-disk/modules/gcc/4.8/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.8.5/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../configure --prefix=/opt/modules/gcc/4.8 Thread model: posix gcc version 4.8.5 (GCC) **************************************************** Installing pyzmq-16.0.0 Installing package pyzmq using pip2 Ignoring indexes: https://pypi.python.org/simple Processing /media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Running setup.py (path:/tmp/pip-IFUhFq-build/setup.py) egg_info for package from file:///media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Running command python setup.py egg_info running egg_info creating pip-egg-info/pyzmq.egg-info writing pip-egg-info/pyzmq.egg-info/PKG-INFO writing top-level names to pip-egg-info/pyzmq.egg-info/top_level.txt writing dependency_links to pip-egg-info/pyzmq.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'tox.ini' no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/gh-pages' warning: no previously-included files found matching 'bundled/zeromq/src/Makefile*' warning: no previously-included files found matching 'bundled/zeromq/src/platform.hpp' warning: no previously-included files found matching 'zmq/libzmq*' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '.mailmap' found anywhere in distribution warning: no previously-included files matching 'Makefile.am' found anywhere in distribution warning: no previously-included files matching 'Makefile.in' found anywhere in distribution writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt' Source in /tmp/pip-IFUhFq-build has version 16.0.0, which satisfies requirement pyzmq==16.0.0 from file:///media/software-disk/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0/src Installing collected packages: pyzmq Running setup.py install for pyzmq: started Running command /opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-IFUhFq-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-IXdhsC-record/install-record.txt --single-version-externally-managed --compile running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/zmq copying zmq/decorators.py -> build/lib.linux-x86_64-2.7/zmq copying zmq/error.py -> build/lib.linux-x86_64-2.7/zmq copying zmq/__init__.py -> build/lib.linux-x86_64-2.7/zmq creating build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/forward.py -> build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/tunnel.py -> build/lib.linux-x86_64-2.7/zmq/ssh copying zmq/ssh/__init__.py -> build/lib.linux-x86_64-2.7/zmq/ssh creating build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/future.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/eventloop copying zmq/eventloop/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/stack_context.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/util.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/concurrent.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/log.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado copying zmq/eventloop/minitornado/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/windows.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/posix.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/auto.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/interface.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/common.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform copying zmq/eventloop/minitornado/platform/__init__.py -> build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform creating build/lib.linux-x86_64-2.7/zmq/log copying zmq/log/handlers.py -> build/lib.linux-x86_64-2.7/zmq/log copying zmq/log/__init__.py -> build/lib.linux-x86_64-2.7/zmq/log creating build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/monitoredqueuedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/proxydevice.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/monitoredqueue.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/__init__.py -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/devices/basedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices creating build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/socket.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/attrsettr.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/context.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/frame.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/poll.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/tracker.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/version.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/constants.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/stopwatch.py -> build/lib.linux-x86_64-2.7/zmq/sugar copying zmq/sugar/__init__.py -> build/lib.linux-x86_64-2.7/zmq/sugar creating build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/constant_names.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/jsonapi.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/garbage.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/win32.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/interop.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/strtypes.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/sixcerpt.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/__init__.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/monitor.py -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/z85.py -> build/lib.linux-x86_64-2.7/zmq/utils creating build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/poll.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/device.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/core.py -> build/lib.linux-x86_64-2.7/zmq/green copying zmq/green/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green creating build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop copying zmq/green/eventloop/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green/eventloop creating build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_pair.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_message.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_ioloop.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_z85.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_retry_eintr.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_decorators.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_future.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_reqrep.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_version.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_includes.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_etc.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_context.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_error.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_cffi_backend.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_socket.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_win32_shim.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_monqueue.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_multipart.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_ssh.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_constants.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_auth.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_imports.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_log.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_poll.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_pubsub.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/__init__.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_monitor.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_security.py -> build/lib.linux-x86_64-2.7/zmq/tests copying zmq/tests/test_device.py -> build/lib.linux-x86_64-2.7/zmq/tests creating build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/certs.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/base.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/thread.py -> build/lib.linux-x86_64-2.7/zmq/auth copying zmq/auth/__init__.py -> build/lib.linux-x86_64-2.7/zmq/auth creating build/lib.linux-x86_64-2.7/zmq/backend copying zmq/backend/select.py -> build/lib.linux-x86_64-2.7/zmq/backend copying zmq/backend/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend creating build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend/cython creating build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/socket.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/context.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/error.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/utils.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/message.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/constants.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/devices.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_poll.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_cffi.py -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/devices/monitoredqueue.pxd -> build/lib.linux-x86_64-2.7/zmq/devices copying zmq/utils/buffers.pxd -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/zmq_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/pyversion_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/ipcmaxlen.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/getpid_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/utils/zmq_constants.h -> build/lib.linux-x86_64-2.7/zmq/utils copying zmq/backend/cython/message.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/checkrc.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/context.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/libzmq.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/socket.pxd -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/constants.pxi -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cython/constant_enums.pxi -> build/lib.linux-x86_64-2.7/zmq/backend/cython copying zmq/backend/cffi/_cdefs.h -> build/lib.linux-x86_64-2.7/zmq/backend/cffi copying zmq/backend/cffi/_verify.c -> build/lib.linux-x86_64-2.7/zmq/backend/cffi running build_ext running configure {'libraries': ['zmq'], 'extra_link_args': [], 'runtime_library_dirs': [], 'library_dirs': ['/opt/modules/sagemath/8.1/lib'], 'include_dirs': ['/opt/modules/sagemath/8.1/include']} gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -I/opt/modules/sagemath/8.1/include -c build/temp.linux-x86_64-2.7/scratch/check_sys_un.c -o build/temp.linux-x86_64-2.7/scratch/check_sys_un.o gcc build/temp.linux-x86_64-2.7/scratch/check_sys_un.o -L/opt/modules/sagemath/8.1/lib -Wl,-R/opt/modules/sagemath/8.1/lib -o build/temp.linux-x86_64-2.7/scratch/check_sys_un Warning: No sys/un.h, IPC_PATH_MAX_LEN will be undefined: [Errno 13] Permission denied ************************************************ Configure: Autodetecting ZMQ settings... Custom ZMQ dir: /opt/modules/sagemath/8.1 creating build/temp.linux-x86_64-2.7/scratch/tmp cc -c /tmp/timer_createYPbNta.c -o build/temp.linux-x86_64-2.7/scratch/tmp/timer_createYPbNta.o cc build/temp.linux-x86_64-2.7/scratch/tmp/timer_createYPbNta.o -o build/temp.linux-x86_64-2.7/scratch/a.out build/temp.linux-x86_64-2.7/scratch/tmp/timer_createYPbNta.o: In function `main': timer_createYPbNta.c:(.text+0x15): undefined reference to `timer_create' collect2: error: ld returned 1 exit status gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -I/opt/modules/sagemath/8.1/include -Izmq/utils -Izmq/backend/cython -Izmq/devices -c build/temp.linux-x86_64-2.7/scratch/vers.c -o build/temp.linux-x86_64-2.7/scratch/vers.o gcc build/temp.linux-x86_64-2.7/scratch/vers.o -L/opt/modules/sagemath/8.1/lib -Wl,-R/opt/modules/sagemath/8.1/lib -lzmq -lrt -o build/temp.linux-x86_64-2.7/scratch/vers error: [Errno 13] Permission denied Fatal: Falling back on bundled libzmq, but config has explicitly prohibited building the libzmq extension. Running setup.py install for pyzmq: finished with status 'error' Cleaning up... Removing source in /tmp/pip-IFUhFq-build Command "/opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-IFUhFq-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-IXdhsC-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-IFUhFq-build/ Exception information: Traceback (most recent call last): File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/basecommand.py", line 215, in main status = self.run(options, args) File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/commands/install.py", line 342, in run prefix=options.prefix_path, File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/req/req_set.py", line 784, in install **kwargs File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/req/req_install.py", line 878, in install spinner=spinner, File "/opt/modules/sagemath/8.1/lib/python2.7/site-packages/pip/utils/__init__.py", line 707, in call_subprocess % (command_desc, proc.returncode, cwd)) InstallationError: Command "/opt/modules/sagemath/8.1/bin/python2 -u -c "import setuptools, tokenize;__file__='/tmp/pip-IFUhFq-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-IXdhsC-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-IFUhFq-build/ Error: installing with pip2 failed ******************************************************************************** Error installing pyzmq-16.0.0 ******************************************************************************** real 0m1.401s user 0m1.102s sys 0m0.288s ************************************************************************ Error installing package pyzmq-16.0.0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /media/software-disk/sources/sagemath/8.1/sage-8.1/logs/pkgs/pyzmq-16.0.0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /opt/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/opt/modules/sagemath/8.1/var/tmp/sage/build/pyzmq-16.0.0' && '/media/software-disk/sources/sagemath/8.1/sage-8.1/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
