Dear all,
After sage-8.0 installed ~100 packages, libraries etc, the compilation
process reached *pyzmp* producing the error shown in the attached log file.
Original configuration is shown in the config.log
I searched throughout relevant issues in the group but it seems, at least
to me, that they don't apply, since all the prerequisites are satisfied in
my machine.
However, not being an expert on these issues, any help would be most
appreciated.
Tasos
--
You received this message because you are subscribed to the Google Groups
"sage-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to sage-devel+unsubscr...@googlegroups.com.
To post to this group, send email to sage-devel@googlegroups.com.
Visit this group at https://groups.google.com/group/sage-devel.
For more options, visit https://groups.google.com/d/optout.
Found local metadata for pyzmq-16.0.0
Using cached file /home/tasos/sage-8.0/upstream/pyzmq-16.0.0.tar.gz
pyzmq-16.0.0
====================================================
Setting up build directory for pyzmq-16.0.0
Finished extraction
No patch files found in ../patches
****************************************************
Host system:
Linux linux 4.13.1-1-default #1 SMP PREEMPT Sun Sep 10 12:02:44 UTC 2017
(0d725b5) x86_64 x86_64 x86_64 GNU/Linux
****************************************************
C compiler: /usr/bin/cc
C compiler version:
Using built-in specs.
COLLECT_GCC=/usr/bin/cc
COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/7/lto-wrapper
OFFLOAD_TARGET_NAMES=hsa:nvptx-none
Target: x86_64-suse-linux
Configured with: ../configure --prefix=/usr --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64
--enable-languages=c,c++,objc,fortran,obj-c++,ada,go
--enable-offload-targets=hsa,nvptx-none=/usr/nvptx-none, --without-cuda-driver
--enable-checking=release --disable-werror
--with-gxx-include-dir=/usr/include/c++/7 --enable-ssp --disable-libssp
--disable-libvtv --disable-libcc1 --enable-plugin
--with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux'
--with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit
--enable-libstdcxx-allocator=new --disable-libstdcxx-pch
--enable-version-specific-runtime-libs --with-gcc-major-version-only
--enable-linker-build-id --enable-linux-futex --enable-gnu-indirect-function
--program-suffix=-7 --without-system-libunwind --enable-multilib
--with-arch-32=x86-64 --with-tune=generic --build=x86_64-suse-linux
--host=x86_64-suse-linux
Thread model: posix
gcc version 7.2.1 20170901 [gcc-7-branch revision 251580] (SUSE Linux)
****************************************************
Installing package pyzmq using pip2
Ignoring indexes: https://pypi.python.org/simple
Processing /home/tasos/sage-8.0/local/var/tmp/sage/build/pyzmq-16.0.0/src
Running setup.py (path:/tmp/pip-GP2Hmo-build/setup.py) egg_info for package
from file:///home/tasos/sage-8.0/local/var/tmp/sage/build/pyzmq-16.0.0/src
Running command python setup.py egg_info
running egg_info
creating pip-egg-info/pyzmq.egg-info
writing pip-egg-info/pyzmq.egg-info/PKG-INFO
writing top-level names to pip-egg-info/pyzmq.egg-info/top_level.txt
writing dependency_links to pip-egg-info/pyzmq.egg-info/dependency_links.txt
writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt'
reading manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'tox.ini'
no previously-included directories found matching 'docs/build'
no previously-included directories found matching 'docs/gh-pages'
warning: no previously-included files found matching
'bundled/zeromq/src/Makefile*'
warning: no previously-included files found matching
'bundled/zeromq/src/platform.hpp'
warning: no previously-included files found matching 'zmq/libzmq*'
warning: no previously-included files matching '__pycache__/*' found
anywhere in distribution
warning: no previously-included files matching '.deps/*' found anywhere in
distribution
warning: no previously-included files matching '*.so' found anywhere in
distribution
warning: no previously-included files matching '*.pyd' found anywhere in
distribution
warning: no previously-included files matching '.git*' found anywhere in
distribution
warning: no previously-included files matching '.DS_Store' found anywhere
in distribution
warning: no previously-included files matching '.mailmap' found anywhere in
distribution
warning: no previously-included files matching 'Makefile.am' found anywhere
in distribution
warning: no previously-included files matching 'Makefile.in' found anywhere
in distribution
writing manifest file 'pip-egg-info/pyzmq.egg-info/SOURCES.txt'
Source in /tmp/pip-GP2Hmo-build has version 16.0.0, which satisfies
requirement pyzmq==16.0.0 from
file:///home/tasos/sage-8.0/local/var/tmp/sage/build/pyzmq-16.0.0/src
Installing collected packages: pyzmq
Running setup.py install for pyzmq: started
Running command /home/tasos/sage-8.0/local/bin/python2 -u -c "import
setuptools,
tokenize;__file__='/tmp/pip-GP2Hmo-build/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
--no-user-cfg install --record /tmp/pip-pDCFAw-record/install-record.txt
--single-version-externally-managed --compile
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/zmq
copying zmq/error.py -> build/lib.linux-x86_64-2.7/zmq
copying zmq/__init__.py -> build/lib.linux-x86_64-2.7/zmq
copying zmq/decorators.py -> build/lib.linux-x86_64-2.7/zmq
creating build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_etc.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_includes.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_pubsub.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_imports.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_win32_shim.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/__init__.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_auth.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_socket.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_cffi_backend.py ->
build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_security.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_reqrep.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_pair.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_zmqstream.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_message.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_multipart.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_ioloop.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_constants.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_poll.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_decorators.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_log.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_ssh.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_retry_eintr.py ->
build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_error.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_version.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_future.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_z85.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_monitor.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_device.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_context.py -> build/lib.linux-x86_64-2.7/zmq/tests
copying zmq/tests/test_monqueue.py -> build/lib.linux-x86_64-2.7/zmq/tests
creating build/lib.linux-x86_64-2.7/zmq/ssh
copying zmq/ssh/__init__.py -> build/lib.linux-x86_64-2.7/zmq/ssh
copying zmq/ssh/forward.py -> build/lib.linux-x86_64-2.7/zmq/ssh
copying zmq/ssh/tunnel.py -> build/lib.linux-x86_64-2.7/zmq/ssh
creating build/lib.linux-x86_64-2.7/zmq/eventloop
copying zmq/eventloop/__init__.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop
copying zmq/eventloop/zmqstream.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop
copying zmq/eventloop/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/eventloop
copying zmq/eventloop/future.py -> build/lib.linux-x86_64-2.7/zmq/eventloop
creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado
copying zmq/eventloop/minitornado/__init__.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado
copying zmq/eventloop/minitornado/ioloop.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado
copying zmq/eventloop/minitornado/stack_context.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado
copying zmq/eventloop/minitornado/log.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado
copying zmq/eventloop/minitornado/concurrent.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado
copying zmq/eventloop/minitornado/util.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado
creating build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform
copying zmq/eventloop/minitornado/platform/__init__.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform
copying zmq/eventloop/minitornado/platform/common.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform
copying zmq/eventloop/minitornado/platform/auto.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform
copying zmq/eventloop/minitornado/platform/windows.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform
copying zmq/eventloop/minitornado/platform/posix.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform
copying zmq/eventloop/minitornado/platform/interface.py ->
build/lib.linux-x86_64-2.7/zmq/eventloop/minitornado/platform
creating build/lib.linux-x86_64-2.7/zmq/green
copying zmq/green/__init__.py -> build/lib.linux-x86_64-2.7/zmq/green
copying zmq/green/core.py -> build/lib.linux-x86_64-2.7/zmq/green
copying zmq/green/device.py -> build/lib.linux-x86_64-2.7/zmq/green
copying zmq/green/poll.py -> build/lib.linux-x86_64-2.7/zmq/green
creating build/lib.linux-x86_64-2.7/zmq/green/eventloop
copying zmq/green/eventloop/__init__.py ->
build/lib.linux-x86_64-2.7/zmq/green/eventloop
copying zmq/green/eventloop/zmqstream.py ->
build/lib.linux-x86_64-2.7/zmq/green/eventloop
copying zmq/green/eventloop/ioloop.py ->
build/lib.linux-x86_64-2.7/zmq/green/eventloop
creating build/lib.linux-x86_64-2.7/zmq/log
copying zmq/log/__init__.py -> build/lib.linux-x86_64-2.7/zmq/log
copying zmq/log/handlers.py -> build/lib.linux-x86_64-2.7/zmq/log
creating build/lib.linux-x86_64-2.7/zmq/auth
copying zmq/auth/base.py -> build/lib.linux-x86_64-2.7/zmq/auth
copying zmq/auth/__init__.py -> build/lib.linux-x86_64-2.7/zmq/auth
copying zmq/auth/thread.py -> build/lib.linux-x86_64-2.7/zmq/auth
copying zmq/auth/ioloop.py -> build/lib.linux-x86_64-2.7/zmq/auth
copying zmq/auth/certs.py -> build/lib.linux-x86_64-2.7/zmq/auth
creating build/lib.linux-x86_64-2.7/zmq/backend
copying zmq/backend/__init__.py -> build/lib.linux-x86_64-2.7/zmq/backend
copying zmq/backend/select.py -> build/lib.linux-x86_64-2.7/zmq/backend
creating build/lib.linux-x86_64-2.7/zmq/backend/cython
copying zmq/backend/cython/__init__.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cython
creating build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/message.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/utils.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/socket.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/error.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/devices.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/__init__.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/context.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/constants.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/_cffi.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/_poll.py ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
creating build/lib.linux-x86_64-2.7/zmq/devices
copying zmq/devices/monitoredqueue.py ->
build/lib.linux-x86_64-2.7/zmq/devices
copying zmq/devices/__init__.py -> build/lib.linux-x86_64-2.7/zmq/devices
copying zmq/devices/basedevice.py -> build/lib.linux-x86_64-2.7/zmq/devices
copying zmq/devices/monitoredqueuedevice.py ->
build/lib.linux-x86_64-2.7/zmq/devices
copying zmq/devices/proxydevice.py -> build/lib.linux-x86_64-2.7/zmq/devices
creating build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/socket.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/frame.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/__init__.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/stopwatch.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/context.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/constants.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/version.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/attrsettr.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/tracker.py -> build/lib.linux-x86_64-2.7/zmq/sugar
copying zmq/sugar/poll.py -> build/lib.linux-x86_64-2.7/zmq/sugar
creating build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/__init__.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/interop.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/win32.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/z85.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/jsonapi.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/garbage.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/constant_names.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/sixcerpt.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/monitor.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/strtypes.py -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/backend/cython/socket.pxd ->
build/lib.linux-x86_64-2.7/zmq/backend/cython
copying zmq/backend/cython/libzmq.pxd ->
build/lib.linux-x86_64-2.7/zmq/backend/cython
copying zmq/backend/cython/message.pxd ->
build/lib.linux-x86_64-2.7/zmq/backend/cython
copying zmq/backend/cython/checkrc.pxd ->
build/lib.linux-x86_64-2.7/zmq/backend/cython
copying zmq/backend/cython/context.pxd ->
build/lib.linux-x86_64-2.7/zmq/backend/cython
copying zmq/backend/cython/constant_enums.pxi ->
build/lib.linux-x86_64-2.7/zmq/backend/cython
copying zmq/backend/cython/constants.pxi ->
build/lib.linux-x86_64-2.7/zmq/backend/cython
copying zmq/backend/cffi/_cdefs.h ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/backend/cffi/_verify.c ->
build/lib.linux-x86_64-2.7/zmq/backend/cffi
copying zmq/devices/monitoredqueue.pxd ->
build/lib.linux-x86_64-2.7/zmq/devices
copying zmq/utils/buffers.pxd -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/pyversion_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/zmq_constants.h -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/getpid_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/zmq_compat.h -> build/lib.linux-x86_64-2.7/zmq/utils
copying zmq/utils/ipcmaxlen.h -> build/lib.linux-x86_64-2.7/zmq/utils
running build_ext
running configure
{'libraries': ['zmq'], 'extra_link_args': [], 'runtime_library_dirs': [],
'library_dirs': ['/home/tasos/sage-8.0/local/lib'], 'include_dirs':
['/home/tasos/sage-8.0/local/include']}
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall
-Wno-unused -fPIC -I/home/tasos/sage-8.0/local/include -c
build/temp.linux-x86_64-2.7/scratch/check_sys_un.c -o
build/temp.linux-x86_64-2.7/scratch/check_sys_un.o
/usr/bin/cc build/temp.linux-x86_64-2.7/scratch/check_sys_un.o
-L/home/tasos/sage-8.0/local/lib -R/home/tasos/sage-8.0/local/lib -o
build/temp.linux-x86_64-2.7/scratch/check_sys_un
cc: error: unrecognized command line option '-R'
Warning: No sys/un.h, IPC_PATH_MAX_LEN will be undefined: command
'/usr/bin/cc' failed with exit status 1
************************************************
Configure: Autodetecting ZMQ settings...
Custom ZMQ dir: /home/tasos/sage-8.0/local
creating build/temp.linux-x86_64-2.7/scratch/tmp
cc -c /tmp/timer_createLQqjMP.c -o
build/temp.linux-x86_64-2.7/scratch/tmp/timer_createLQqjMP.o
/tmp/timer_createLQqjMP.c:1:1: warning: return type defaults to 'int'
[-Wimplicit-int]
main (int argc, char **argv) {
^~~~
/tmp/timer_createLQqjMP.c: In function 'main':
/tmp/timer_createLQqjMP.c:2:5: warning: implicit declaration of function
'timer_create' [-Wimplicit-function-declaration]
timer_create();
^~~~~~~~~~~~
cc build/temp.linux-x86_64-2.7/scratch/tmp/timer_createLQqjMP.o -o
build/temp.linux-x86_64-2.7/scratch/a.out
build/temp.linux-x86_64-2.7/scratch/tmp/timer_createLQqjMP.o: In function
`main':
timer_createLQqjMP.c:(.text+0x15): undefined reference to `timer_create'
collect2: error: ld returned 1 exit status
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall
-Wno-unused -fPIC -I/home/tasos/sage-8.0/local/include -Izmq/utils
-Izmq/backend/cython -Izmq/devices -c
build/temp.linux-x86_64-2.7/scratch/vers.c -o
build/temp.linux-x86_64-2.7/scratch/vers.o
/usr/bin/cc build/temp.linux-x86_64-2.7/scratch/vers.o
-L/home/tasos/sage-8.0/local/lib -R/home/tasos/sage-8.0/local/lib -lzmq -lrt -o
build/temp.linux-x86_64-2.7/scratch/vers
cc: error: unrecognized command line option '-R'
error: command '/usr/bin/cc' failed with exit status 1
Fatal: Falling back on bundled libzmq, but config has explicitly prohibited
building the libzmq extension.
Running setup.py install for pyzmq: finished with status 'error'
Cleaning up...
Removing source in /tmp/pip-GP2Hmo-build
Command "/home/tasos/sage-8.0/local/bin/python2 -u -c "import setuptools,
tokenize;__file__='/tmp/pip-GP2Hmo-build/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
--no-user-cfg install --record /tmp/pip-pDCFAw-record/install-record.txt
--single-version-externally-managed --compile" failed with error code 1 in
/tmp/pip-GP2Hmo-build/
Exception information:
Traceback (most recent call last):
File
"/home/tasos/sage-8.0/local/lib/python2.7/site-packages/pip/basecommand.py",
line 215, in main
status = self.run(options, args)
File
"/home/tasos/sage-8.0/local/lib/python2.7/site-packages/pip/commands/install.py",
line 317, in run
prefix=options.prefix_path,
File
"/home/tasos/sage-8.0/local/lib/python2.7/site-packages/pip/req/req_set.py",
line 742, in install
**kwargs
File
"/home/tasos/sage-8.0/local/lib/python2.7/site-packages/pip/req/req_install.py",
line 880, in install
spinner=spinner,
File
"/home/tasos/sage-8.0/local/lib/python2.7/site-packages/pip/utils/__init__.py",
line 718, in call_subprocess
% (command_desc, proc.returncode, cwd))
InstallationError: Command "/home/tasos/sage-8.0/local/bin/python2 -u -c
"import setuptools,
tokenize;__file__='/tmp/pip-GP2Hmo-build/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
--no-user-cfg install --record /tmp/pip-pDCFAw-record/install-record.txt
--single-version-externally-managed --compile" failed with error code 1 in
/tmp/pip-GP2Hmo-build/
Error: installing with pip2 failed
real 0m1.225s
user 0m1.013s
sys 0m0.172s
************************************************************************
Error installing package pyzmq-16.0.0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the log file
/home/tasos/sage-8.0/logs/pkgs/pyzmq-16.0.0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/tasos/sage-8.0/local/var/tmp/sage/build/pyzmq-16.0.0 and type 'make' or
whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/tasos/sage-8.0/local/var/tmp/sage/build/pyzmq-16.0.0' &&
'/home/tasos/sage-8.0/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by Sage configure 8.0.beta10, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure
## --------- ##
## Platform. ##
## --------- ##
hostname = linux
uname -m = x86_64
uname -r = 4.13.1-1-default
uname -s = Linux
uname -v = #1 SMP PREEMPT Sun Sep 10 12:02:44 UTC 2017 (0d725b5)
/usr/bin/uname -p = x86_64
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/lib64/mpi/gcc/openmpi/bin
PATH: /home/tasos/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2157: loading site script /usr/share/site/x86_64-unknown-linux-gnu
| #!/bin/sh
| # Site script for configure. It is resourced via $CONFIG_SITE environment
varaible.
|
| # If user did not specify libdir, guess the correct target:
| # Use lib64 for 64 bit bi-arch targets, keep the default for the rest.
| if test "$libdir" = '${exec_prefix}/lib' ; then
|
| ac_config_site_64bit_host=NONE
|
| case "$host" in
| "" )
| # User did not specify host target.
| # The native platform x86_64 is a bi-arch platform.
| # Try to detect cross-compilation to inferior architecture.
|
| # We are trying to guess 32-bit target compilation. It's not as
easy as
| # it sounds, as there is possible several intermediate
combinations.
| ac_config_site_cross_to_32bit_host=NONE
|
| # User defined -m32 in CFLAGS or CXXFLAGS or CC or CXX:
| # (It's sufficient for 32-bit, but alone may cause mis-behavior
of some checks.)
| case "$CFLAGS $CXXFLAGS $CC $CXX" in
| *-m32*)
| ac_config_site_cross_to_32bit_host=YES
| ;;
| esac
|
| # Running with linux32:
| # (Changes detected platform, but not the toolchain target.)
| case "`/bin/uname -i`" in
| x86_64 | ppc64 | s390x | aarch64 )
| ;;
| * )
| ac_config_site_cross_to_32bit_host=YES
| ;;
| esac
|
| if test "x$ac_config_site_cross_to_32bit_host" = xNONE; then
| ac_config_site_64bit_host=YES
| fi
|
| ;;
| *x86_64* | *ppc64* | *s390x* | *aarch64* )
| ac_config_site_64bit_host=YES
| ;;
| esac
|
| if test "x$ac_config_site_64bit_host" = xYES; then
| libdir='${exec_prefix}/lib64'
| fi
| fi
|
| # If user did not specify libexecdir, set the correct target:
| # Nor FHS nor openSUSE allow prefix/libexec. Let's default to prefix/lib.
|
| if test "$libexecdir" = '${exec_prefix}/libexec' ; then
| libexecdir='${exec_prefix}/lib'
| fi
|
| # Continue with the standard behavior of configure defined in AC_SITE_LOAD:
| if test "x$prefix" != xNONE; then
| ac_site_file1=$prefix/share/config.site
| ac_site_file2=$prefix/etc/config.site
| else
| ac_site_file1=$ac_default_prefix/share/config.site
| ac_site_file2=$ac_default_prefix/etc/config.site
| fi
| for ac_site_file in "$ac_site_file1" "$ac_site_file2"
| do
| test "x$ac_site_file" = xNONE && continue
| if test /dev/null != "$ac_site_file" && test -r "$ac_site_file"; then
| { $as_echo
"/usr/share/site/x86_64-unknown-linux-gnu:${as_lineno-$LINENO}: loading site
script $ac_site_file" >&5
| $as_echo "/usr/share/site/x86_64-unknown-linux-gnu: loading site script
$ac_site_file" >&6;}
| sed 's/^/| /' "$ac_site_file" >&5
| . "$ac_site_file" \
| || { { $as_echo
"/usr/share/site/x86_64-unknown-linux-gnu:${as_lineno-$LINENO}: error: in
\`$ac_pwd':" >&5
| $as_echo "/usr/share/site/x86_64-unknown-linux-gnu: error: in \`$ac_pwd':"
>&2;}
| as_fn_error $? "failed to load site script $ac_site_file
| See \`config.log' for more details" "$LINENO" 5; }
| fi
| done
configure:2304: checking for a BSD-compatible install
configure:2372: result: /usr/bin/install -c
configure:2383: checking whether build environment is sane
configure:2438: result: yes
configure:2589: checking for a thread-safe mkdir -p
configure:2628: result: /usr/bin/mkdir -p
configure:2635: checking for gawk
configure:2651: found /usr/bin/gawk
configure:2662: result: gawk
configure:2673: checking whether make sets $(MAKE)
configure:2695: result: yes
configure:2724: checking whether make supports nested variables
configure:2741: result: yes
configure:2870: checking whether to enable maintainer-specific portions of
Makefiles
configure:2879: result: yes
configure:2949: checking for root user
configure:2958: result: no
configure:2969: checking build system type
configure:2983: result: x86_64-unknown-linux-gnu
configure:3003: checking host system type
configure:3016: result: x86_64-unknown-linux-gnu
configure:3130: checking for ar
configure:3146: found /usr/bin/ar
configure:3158: result: yes
configure:3179: checking for m4
configure:3195: found /usr/bin/m4
configure:3207: result: yes
configure:3228: checking for ranlib
configure:3244: found /usr/bin/ranlib
configure:3256: result: yes
configure:3277: checking for strip
configure:3293: found /usr/bin/strip
configure:3305: result: yes
configure:3325: checking for GNU or BSD tar
configure:3373: result: /usr/bin/tar
configure:3384: checking for GNU make
configure:3426: result: /usr/bin/make
configure:3440: checking for latex
configure:3456: found /usr/bin/latex
configure:3468: result: yes
configure:3492: checking for perl
configure:3510: found /usr/bin/perl
configure:3522: result: /usr/bin/perl
configure:3530: checking for Perl version 5.8.0 or later
configure:3541: result: yes
configure:3553: checking for git
configure:3585: result: /usr/bin/git
configure:3590: checking for yasm
configure:3627: result: no
configure:3722: checking for gcc
configure:3749: result: /usr/bin/cc
configure:3978: checking for C compiler version
configure:3987: /usr/bin/cc --version >&5
cc (SUSE Linux) 7.2.1 20170901 [gcc-7-branch revision 251580]
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3998: $? = 0
configure:3987: /usr/bin/cc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/cc
COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/7/lto-wrapper
OFFLOAD_TARGET_NAMES=hsa:nvptx-none
Target: x86_64-suse-linux
Configured with: ../configure --prefix=/usr --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64
--enable-languages=c,c++,objc,fortran,obj-c++,ada,go
--enable-offload-targets=hsa,nvptx-none=/usr/nvptx-none, --without-cuda-driver
--enable-checking=release --disable-werror
--with-gxx-include-dir=/usr/include/c++/7 --enable-ssp --disable-libssp
--disable-libvtv --disable-libcc1 --enable-plugin
--with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux'
--with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit
--enable-libstdcxx-allocator=new --disable-libstdcxx-pch
--enable-version-specific-runtime-libs --with-gcc-major-version-only
--enable-linker-build-id --enable-linux-futex --enable-gnu-indirect-function
--program-suffix=-7 --without-system-libunwind --enable-multilib
--with-arch-32=x86-64 --with-tune=generic --build=x86_64-suse-linux
--host=x86_64-suse-linux
Thread model: posix
gcc version 7.2.1 20170901 [gcc-7-branch revision 251580] (SUSE Linux)
configure:3998: $? = 0
configure:3987: /usr/bin/cc -V >&5
cc: error: unrecognized command line option '-V'
cc: fatal error: no input files
compilation terminated.
configure:3998: $? = 1
configure:3987: /usr/bin/cc -qversion >&5
cc: error: unrecognized command line option '-qversion'; did you mean
'--version'?
cc: fatal error: no input files
compilation terminated.
configure:3998: $? = 1
configure:4018: checking whether the C compiler works
configure:4040: /usr/bin/cc conftest.c >&5
configure:4044: $? = 0
configure:4092: result: yes
configure:4095: checking for C compiler default output file name
configure:4097: result: a.out
configure:4103: checking for suffix of executables
configure:4110: /usr/bin/cc -o conftest conftest.c >&5
configure:4114: $? = 0
configure:4136: result:
configure:4158: checking whether we are cross compiling
configure:4166: /usr/bin/cc -o conftest conftest.c >&5
configure:4170: $? = 0
configure:4177: ./conftest
configure:4181: $? = 0
configure:4196: result: no
configure:4201: checking for suffix of object files
configure:4223: /usr/bin/cc -c conftest.c >&5
configure:4227: $? = 0
configure:4248: result: o
configure:4252: checking whether we are using the GNU C compiler
configure:4271: /usr/bin/cc -c conftest.c >&5
configure:4271: $? = 0
configure:4280: result: yes
configure:4289: checking whether /usr/bin/cc accepts -g
configure:4309: /usr/bin/cc -c -g conftest.c >&5
configure:4309: $? = 0
configure:4350: result: yes
configure:4367: checking for /usr/bin/cc option to accept ISO C89
configure:4430: /usr/bin/cc -c -g -O2 conftest.c >&5
configure:4430: $? = 0
configure:4443: result: none needed
configure:4468: checking whether /usr/bin/cc understands -c and -o together
configure:4490: /usr/bin/cc -c conftest.c -o conftest2.o
configure:4493: $? = 0
configure:4490: /usr/bin/cc -c conftest.c -o conftest2.o
configure:4493: $? = 0
configure:4505: result: yes
configure:4533: checking for style of include used by make
configure:4561: result: GNU
configure:4587: checking dependency style of /usr/bin/cc
configure:4698: result: none
configure:4718: checking how to run the C preprocessor
configure:4749: /usr/bin/cc -E conftest.c
configure:4749: $? = 0
configure:4763: /usr/bin/cc -E conftest.c
conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:4763: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Sage"
| #define PACKAGE_TARNAME "sage"
| #define PACKAGE_VERSION "8.0.beta10"
| #define PACKAGE_STRING "Sage 8.0.beta10"
| #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com"
| #define PACKAGE_URL ""
| #define PACKAGE "sage"
| #define VERSION "8.0.beta10"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4788: result: /usr/bin/cc -E
configure:4808: /usr/bin/cc -E conftest.c
configure:4808: $? = 0
configure:4822: /usr/bin/cc -E conftest.c
conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:4822: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Sage"
| #define PACKAGE_TARNAME "sage"
| #define PACKAGE_VERSION "8.0.beta10"
| #define PACKAGE_STRING "Sage 8.0.beta10"
| #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com"
| #define PACKAGE_URL ""
| #define PACKAGE "sage"
| #define VERSION "8.0.beta10"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4915: checking for g++
configure:4931: found /usr/bin/g++
configure:4942: result: g++
configure:4969: checking for C++ compiler version
configure:4978: g++ --version >&5
g++ (SUSE Linux) 7.2.1 20170901 [gcc-7-branch revision 251580]
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:4989: $? = 0
configure:4978: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/7/lto-wrapper
OFFLOAD_TARGET_NAMES=hsa:nvptx-none
Target: x86_64-suse-linux
Configured with: ../configure --prefix=/usr --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64
--enable-languages=c,c++,objc,fortran,obj-c++,ada,go
--enable-offload-targets=hsa,nvptx-none=/usr/nvptx-none, --without-cuda-driver
--enable-checking=release --disable-werror
--with-gxx-include-dir=/usr/include/c++/7 --enable-ssp --disable-libssp
--disable-libvtv --disable-libcc1 --enable-plugin
--with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux'
--with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit
--enable-libstdcxx-allocator=new --disable-libstdcxx-pch
--enable-version-specific-runtime-libs --with-gcc-major-version-only
--enable-linker-build-id --enable-linux-futex --enable-gnu-indirect-function
--program-suffix=-7 --without-system-libunwind --enable-multilib
--with-arch-32=x86-64 --with-tune=generic --build=x86_64-suse-linux
--host=x86_64-suse-linux
Thread model: posix
gcc version 7.2.1 20170901 [gcc-7-branch revision 251580] (SUSE Linux)
configure:4989: $? = 0
configure:4978: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:4989: $? = 1
configure:4978: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'; did you mean
'--version'?
g++: fatal error: no input files
compilation terminated.
configure:4989: $? = 1
configure:4993: checking whether we are using the GNU C++ compiler
configure:5012: g++ -c conftest.cpp >&5
configure:5012: $? = 0
configure:5021: result: yes
configure:5030: checking whether g++ accepts -g
configure:5050: g++ -c -g conftest.cpp >&5
configure:5050: $? = 0
configure:5091: result: yes
configure:5116: checking dependency style of g++
configure:5227: result: none
configure:5301: checking for gfortran
configure:5317: found /usr/bin/gfortran
configure:5328: result: gfortran
configure:5354: checking for Fortran compiler version
configure:5363: gfortran --version >&5
GNU Fortran (SUSE Linux) 7.2.1 20170901 [gcc-7-branch revision 251580]
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:5374: $? = 0
configure:5363: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/7/lto-wrapper
OFFLOAD_TARGET_NAMES=hsa:nvptx-none
Target: x86_64-suse-linux
Configured with: ../configure --prefix=/usr --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64
--enable-languages=c,c++,objc,fortran,obj-c++,ada,go
--enable-offload-targets=hsa,nvptx-none=/usr/nvptx-none, --without-cuda-driver
--enable-checking=release --disable-werror
--with-gxx-include-dir=/usr/include/c++/7 --enable-ssp --disable-libssp
--disable-libvtv --disable-libcc1 --enable-plugin
--with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux'
--with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit
--enable-libstdcxx-allocator=new --disable-libstdcxx-pch
--enable-version-specific-runtime-libs --with-gcc-major-version-only
--enable-linker-build-id --enable-linux-futex --enable-gnu-indirect-function
--program-suffix=-7 --without-system-libunwind --enable-multilib
--with-arch-32=x86-64 --with-tune=generic --build=x86_64-suse-linux
--host=x86_64-suse-linux
Thread model: posix
gcc version 7.2.1 20170901 [gcc-7-branch revision 251580] (SUSE Linux)
configure:5374: $? = 0
configure:5363: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5374: $? = 1
configure:5363: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'; did you mean
'--version'?
gfortran: fatal error: no input files
compilation terminated.
configure:5374: $? = 1
configure:5383: checking whether we are using the GNU Fortran compiler
configure:5396: gfortran -c conftest.F >&5
configure:5396: $? = 0
configure:5405: result: yes
configure:5411: checking whether gfortran accepts -g
configure:5422: gfortran -c -g conftest.f >&5
configure:5422: $? = 0
configure:5430: result: yes
configure:5482: checking how to run the C++ preprocessor
configure:5509: g++ -E conftest.cpp
configure:5509: $? = 0
configure:5523: g++ -E conftest.cpp
conftest.cpp:11:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:5523: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Sage"
| #define PACKAGE_TARNAME "sage"
| #define PACKAGE_VERSION "8.0.beta10"
| #define PACKAGE_STRING "Sage 8.0.beta10"
| #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com"
| #define PACKAGE_URL ""
| #define PACKAGE "sage"
| #define VERSION "8.0.beta10"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5548: result: g++ -E
configure:5568: g++ -E conftest.cpp
configure:5568: $? = 0
configure:5582: g++ -E conftest.cpp
conftest.cpp:11:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:5582: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Sage"
| #define PACKAGE_TARNAME "sage"
| #define PACKAGE_VERSION "8.0.beta10"
| #define PACKAGE_STRING "Sage 8.0.beta10"
| #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com"
| #define PACKAGE_URL ""
| #define PACKAGE "sage"
| #define VERSION "8.0.beta10"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5611: checking for grep that handles long lines and -e
configure:5669: result: /usr/bin/grep
configure:5674: checking for egrep
configure:5736: result: /usr/bin/grep -E
configure:5741: checking for ANSI C header files
configure:5761: g++ -c -g -O2 conftest.cpp >&5
configure:5761: $? = 0
configure:5834: g++ -o conftest -g -O2 conftest.cpp >&5
configure:5834: $? = 0
configure:5834: ./conftest
configure:5834: $? = 0
configure:5845: result: yes
configure:5858: checking for sys/types.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5858: checking for sys/stat.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5858: checking for stdlib.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5858: checking for string.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5858: checking for memory.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5858: checking for strings.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5858: checking for inttypes.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5858: checking for stdint.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5858: checking for unistd.h
configure:5858: g++ -c -g -O2 conftest.cpp >&5
configure:5858: $? = 0
configure:5858: result: yes
configure:5870: checking complex.h usability
configure:5870: g++ -c -g -O2 conftest.cpp >&5
configure:5870: $? = 0
configure:5870: result: yes
configure:5870: checking complex.h presence
configure:5870: g++ -E conftest.cpp
configure:5870: $? = 0
configure:5870: result: yes
configure:5870: checking for complex.h
configure:5870: result: yes
configure:5900: checking whether g++ supports C++11 features by default
configure:5960: g++ -c -g -O2 conftest.cpp >&5
configure:5960: $? = 0
configure:5967: result: yes
configure:6199: checking for /usr/bin/cc option to accept ISO C99
configure:6348: /usr/bin/cc -c -g -O2 conftest.c >&5
configure:6348: $? = 0
configure:6361: result: none needed
configure:6421: checking for Fortran flag needed to accept free-form source
configure:6440: gfortran -c -g -O2 conftest.f >&5
conftest.f:2:3:
program freeform
1
Error: Non-numeric character in statement label at (1)
conftest.f:2:3:
program freeform
1
Error: Unclassifiable statement at (1)
conftest.f:4:26:
print *, 'Hello ', &
1
Error: Expected expression in PRINT statement at (1)
conftest.f:5:11:
'world.'
1
Error: Invalid character in name at (1)
configure:6440: $? = 1
configure: failed program was:
|
| program freeform
| ! FIXME: how to best confuse non-freeform compilers?
| print *, 'Hello ', &
| 'world.'
| end
configure:6440: gfortran -c -g -O2 -ffree-form conftest.f >&5
configure:6440: $? = 0
configure:6449: result: -ffree-form
configure:6541: checking if gcc accepts -dumpversion option
configure:6566: cat conftest.c 1>&5
int main()
{
return 0;
}
configure:6569: $? = 0
configure:6573: /usr/bin/cc -dumpversion -c conftest.c 1>&5
7
configure:6576: $? = 0
configure:6579: result: yes
configure:6606: checking gcc version
configure:6620: result: 7
configure:6634: checking if g++ accepts -dumpversion option
configure:6659: cat conftest.c 1>&5
int main()
{
return 0;
}
configure:6662: $? = 0
configure:6666: /usr/bin/cc -dumpversion -c conftest.c 1>&5
7
configure:6669: $? = 0
configure:6672: result: yes
configure:6699: checking g++ version
configure:6713: result: 7
configure:6873: checking for sqrt in -lm
configure:6898: g++ -o conftest -g -O2 conftest.cpp -lm >&5
conftest.cpp:29:6: warning: declaration of 'char sqrt()' conflicts with
built-in declaration 'double sqrt(double)' [-Wbuiltin-declaration-mismatch]
char sqrt ();
^~~~
configure:6898: $? = 0
configure:6907: result: yes
configure:7048: checking multiprecision library
configure:7065: result: MPIR
configure:7075: checking BLAS library
configure:7093: result: openblas
configure:7105: checking package versions
configure:7107: result:
configure:7213: result: 4ti2-1.6.7
configure:7213: result: alabaster-0.7.8.p0
configure:7213: result: appnope-0.1.0.p0
configure:7213: result: arb-2.8.1.p1
configure:7213: result: atlas-3.10.2.p3
configure:7213: result: autotools-20141105
configure:7213: result: babel-2.3.4.p0
configure:7213: result: backports_abc-0.5
configure:7213: result: backports_shutil_get_terminal_size-1.0.0.p1
configure:7213: result: backports_ssl_match_hostname-3.5.0.1.p0
configure:7213: result: benzene-20130630
configure:7213: result: bliss-0.73+debian-1+sage-2016-08-02
configure:7213: result: boost-1_61_0
configure:7213: result: boost_cropped-1.58.0
configure:7213: result: brial-0.8.7
configure:7213: result: buckygen-1.0
configure:7213: result: bzip2-1.0.6-20150304
configure:7213: result: cbc-2.9.4
configure:7213: result: ccache-3.2.2
configure:7213: result: cddlib-094g.p1
configure:7213: result: cephes-2.8.p1
configure:7213: result: certifi-2016.2.28.p0
configure:7213: result: cliquer-1.21.p3
configure:7213: result: cmake-3.8.1
configure:7213: result: combinatorial_designs-20140630
configure:7213: result: compilerwrapper-1.2
configure:7213: result: configparser-3.5.0
configure:7213: result: configure-230
configure:7213: result: conway_polynomials-0.5
configure:7213: result: coxeter3-1.1
configure:7213: result: cryptominisat-5.0.1
configure:7213: result: csdp-6.2
configure:7213: result: curl-7.53.1
configure:7213: result: cvxopt-1.1.8.p2
configure:7213: result: cycler-0.10.0.p0
configure:7213: result: cypari-1.0.0
configure:7213: result: cysignals-1.6.4
configure:7213: result: cython-0.25.2.p2
configure:7213: result: d3js-3.4.8
configure:7213: result: database_cremona_ellcurve-20161017
configure:7213: result: database_gap-4.8.6
configure:7213: result: database_jones_numfield-4
configure:7213: result: database_kohel-20160724
configure:7213: result: database_mutation_class-1.0
configure:7213: result: database_odlyzko_zeta-20061209
configure:7213: result: database_pari-20161017
configure:7213: result: database_stein_watkins-20110713
configure:7213: result: database_stein_watkins_mini-20070827
configure:7213: result: database_symbolic_data-20070206
configure:7213: result: dateutil-2.5.3
configure:7213: result: decorator-4.0.6.p0
configure:7213: result: docutils-0.13.1
configure:7213: result: dot2tex-2.9.0.p1
configure:7213: result: ecl-16.1.2.p4
configure:7213: result: eclib-20170330
configure:7213: result: ecm-7.0.4.p0
configure:7213: result: elliptic_curves-0.8.p0
configure:7213: result: entrypoints-0.2.2
configure:7213: result: enum34-1.1.6
configure:7213: result: fflas_ffpack-2.2.2.p0
configure:7213: result: flask-0.10.1.p0
configure:7213: result: flask_autoindex-0.6.p0
configure:7213: result: flask_babel-0.9.p0
configure:7213: result: flask_oldsessions-0.10.p0
configure:7213: result: flask_openid-1.2.5.p0
configure:7213: result: flask_silk-0.2.p0
configure:7213: result: flint-2.5.2.p1
configure:7213: result: flintqs-1.0
configure:7213: result: fpylll-0.2.4dev.p0
configure:7213: result: freetype-2.6.3
configure:7213: result: fricas-1.2.7
configure:7213: result: frobby-0.9.0.p2
configure:7213: result: functools32-3.2.3-2.p0
configure:7213: result: future-0.15.2.p0
configure:7213: result: gambit-14.1.0
configure:7213: result: gap-4.8.6.p3
configure:7213: result: gap3-01may17
configure:7213: result: gap_jupyter-0.9
configure:7213: result: gap_packages-4.8.6.p2
configure:7213: result: gc-7.2f.p0
configure:7217: result: gcc-5.4.0 not installed (configure check)
configure:7213: result: gdb-7.8
configure:7213: result: gf2x-1.1.p3
configure:7213: result: gfan-0.5.p2
configure:7213: result: giac-1.2.3.47.p0
configure:7213: result: giacpy_sage-0.6
configure:7217: result: git-2.11.0 not installed (configure check)
configure:7213: result: git_trac-20160625.p0
configure:7213: result: givaro-4.0.2.p0
configure:7213: result: glpk-4.60.p0
configure:7213: result: gmp-5.1.3
configure:7213: result: gmpy2-2.0.8
configure:7213: result: gp2c-0.0.10
configure:7213: result: graphs-20161026
configure:7213: result: gsl-2.3
configure:7213: result: iconv-1.14
configure:7213: result: igraph-0.7.1
configure:7213: result: imagesize-0.7.1.p0
configure:7213: result: iml-1.0.4p1.p1
configure:7213: result: ipykernel-4.5.2
configure:7213: result: ipython-5.1.0
configure:7213: result: ipython_genutils-0.1.0.p0
configure:7213: result: ipywidgets-6.0.0
configure:7213: result: itsdangerous-0.24.p0
configure:7213: result: jinja2-2.8.p0
configure:7213: result: jmol-14.6.1_2016.07.11.p0
configure:7213: result: jsonschema-2.5.1.p0
configure:7213: result: jupyter_client-4.4.0
configure:7213: result: jupyter_core-4.3.0
configure:7213: result: latte_int-1.7.3
configure:7213: result: lcalc-1.23.p15
configure:7213: result: libbraiding-1.0
configure:7213: result: libfplll-5.1.0.p0
configure:7213: result: libgap-4.8.6
configure:7213: result: libgd-2.1.1.1.p0
configure:7213: result: libhomfly-1.0r2
configure:7213: result: libogg-1.3.1
configure:7213: result: libpng-1.6.29
configure:7213: result: libtheora-1.1.1
configure:7213: result: lidia-2.3.0+latte-patches-2014-10-04
configure:7213: result: lie-2.2.2
configure:7213: result: linbox-1.4.2.p1
configure:7213: result: lrcalc-1.2.p0
configure:7213: result: lrslib-062+autotools-2017-03-03
configure:7213: result: m4ri-20140914
configure:7213: result: m4rie-20150908
configure:7213: result: markupsafe-0.23.p0
configure:7213: result: mathjax-2.6.1
configure:7213: result: matplotlib-1.5.1.p0
configure:7213: result: maxima-5.39.0.p0
configure:7213: result: mcqd-1.0
configure:7213: result: meataxe-2.4.24.p2
configure:7213: result: mistune-0.7.3.p0
configure:7213: result: modular_decomposition-20100607
configure:7213: result: mpc-1.0.3.p0
configure:7213: result: mpfi-1.5.1
configure:7213: result: mpfr-3.1.5.p0
configure:7213: result: mpir-3.0.0.p0
configure:7213: result: mpmath-0.19.p0
configure:7213: result: nauty-26r1
configure:7213: result: nbconvert-4.2.0.p0
configure:7213: result: nbformat-4.2.0
configure:7213: result: ncurses-6.0
configure:7213: result: networkx-1.11.p0
configure:7213: result: normaliz-3.2.1
configure:7213: result: nose-1.3.3.p0
configure:7213: result: notebook-4.4.1.p0
configure:7213: result: notedown-dfda648b
configure:7213: result: ntl-10.3.0
configure:7213: result: numpy-1.12.1
configure:7213: result: openblas-0.2.19.p0
configure:7213: result: openssl-1.0.2j
configure:7213: result: ore_algebra-0.3
configure:7213: result: palp-2.1.p1
configure:7213: result: pandoc_attributes-8bc82f6d
configure:7213: result: pandocfilters-1.3.0
configure:7213: result: pari-2.9.2.p2
configure:7213: result: pari_galdata-20080411
configure:7213: result: pari_jupyter-1.2.2
configure:7213: result: pari_seadata_small-20090618
configure:7213: result: patch-2.7.5
configure:7213: result: pathlib2-2.1.0.p0
configure:7213: result: pathpy-7.1.p0
configure:7213: result: pcre-8.40.p0
configure:7213: result: perl_term_readline_gnu-1.34
configure:7213: result: pexpect-4.1.0.p0
configure:7213: result: pickleshare-0.7.2.p0
configure:7213: result: pillow-3.3.0
configure:7213: result: pip-8.1.2.p1
configure:7213: result: pkgconf-0.9.7
configure:7213: result: pkgconfig-1.2.2.p0
configure:7213: result: planarity-3.0.0.5
configure:7213: result: plantri-4.5
configure:7213: result: polymake-3.1
configure:7213: result: polytopes_db-20120220
configure:7213: result: ppl-1.2
configure:7213: result: prompt_toolkit-1.0.3.p0
configure:7213: result: psutil-5.2.0.p0
configure:7213: result: ptyprocess-0.5.1.p0
configure:7213: result: pycrypto-2.6.1.p2
configure:7213: result: pygments-2.2.0.p0
configure:7213: result: pynac-0.7.8.p0
configure:7213: result: pynormaliz-1.5
configure:7213: result: pyparsing-2.1.5.p0
configure:7213: result: pysingular-0.9.1
configure:7213: result: python2-2.7.13.p1
configure:7213: result: python3-3.6.1
configure:7213: result: python_igraph-0.7.0.p0
configure:7213: result: python_openid-2.2.5.p0
configure:7213: result: pytz-2016.4.p0
configure:7213: result: pyx-0.12.1.p0
configure:7213: result: pyzmq-16.0.0
configure:7213: result: qepcad-B.1.69.p0
configure:7213: result: qhull-2015-src-7.2.0
configure:7213: result: r-3.4.0.p0
configure:7213: result: ratpoints-2.1.3.p4
configure:7213: result: readline-6.3.008
configure:7213: result: requests-2.13.0
configure:7213: result: rpy2-2.8.2.p0
configure:7213: result: rst2ipynb-0.2.1
configure:7213: result: rubiks-20070912.p19
configure:7213: result: rw-0.7
configure:7213: result: saclib-2.2.6
configure:7213: result: sagenb-1.0.1
configure:7213: result: sagenb_export-3.2
configure:7213: result: sagetex-3.0
configure:7213: result: scipoptsuite-4.0.0
configure:7213: result: scipy-0.17.1.p0
configure:7213: result: scons-1.2.0
configure:7213: result: setuptools-33.1.1
configure:7213: result: setuptools_scm-1.11.1.p0
configure:7213: result: simplegeneric-0.8.1.p0
configure:7213: result: singledispatch-3.4.0.3.p0
configure:7213: result: singular-4.1.0p3.p0
configure:7213: result: singular_jupyter-0.9.2
configure:7213: result: sip-4.18
configure:7213: result: sirocco-2.0
configure:7213: result: six-1.10.0.p0
configure:7213: result: snowballstemmer-1.2.1.p0
configure:7213: result: speaklater-1.3.p0
configure:7213: result: sphinx-1.5.3.p1
configure:7213: result: sqlite-autoconf-3170000
configure:7213: result: surf-1.0.6-gcc6
configure:7213: result: symmetrica-2.0.p10
configure:7213: result: sympow-1.018.1.p12
configure:7213: result: sympy-1.0.p2
configure:7213: result: tachyon-0.98.9.p6
configure:7213: result: tdlib-0.3.1
configure:7213: result: termcap-1.3.1.p3
configure:7213: result: terminado-0.6
configure:7213: result: thebe-9624e0a0
configure:7213: result: threejs-r80
configure:7213: result: tides-2.0
configure:7213: result: topcom-0.17.7
configure:7213: result: tornado-4.3.p0
configure:7213: result: traitlets-4.3.1
configure:7213: result: twisted-16.3.0.p0
configure:7213: result: valgrind-3.10.0
configure:7213: result: vcversioner-2.16.0.0.p0
configure:7213: result: wcwidth-0.1.7.p0
configure:7213: result: werkzeug-0.11.10.p0
configure:7213: result: widgetsnbextension-2.0.0
configure:7213: result: xz-5.2.2
configure:7213: result: yasm-1.3.0
configure:7213: result: zeromq-4.0.5
configure:7213: result: zlib-1.2.11
configure:7213: result: zn_poly-0.9.p11
configure:7213: result: zope_interface-4.2.0.p0
configure:7541: checking that generated files are newer than configure
configure:7547: result: done
configure:7578: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by Sage config.status 8.0.beta10, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on linux
config.status:816: creating build/make/Makefile-auto
config.status:816: creating src/Makefile
config.status:816: creating src/bin/sage-env-config
config.status:988: executing depfiles commands
config.status:988: executing mkdirs commands
config.status:1093: creating directory /home/tasos/sage-8.0/logs/pkgs
config.status:1093: creating directory local
config.status:1093: creating directory local/bin
config.status:1093: creating directory local/etc
config.status:1093: creating directory local/include
config.status:1093: creating directory local/lib
config.status:1093: creating directory local/share
config.status:1093: creating directory local/var/lib/sage/installed
config.status:1105: creating symbolic link lib64 -> lib
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=/usr/bin/cc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_freeform=-ffree-form
ac_cv_header_complex_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_m_sqrt=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_GIT=/usr/bin/git
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_MAKE=/usr/bin/make
ac_cv_path_PERL=/usr/bin/perl
ac_cv_path_TAR=/usr/bin/tar
ac_cv_path_YASM=no
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='/usr/bin/cc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_CC=/usr/bin/cc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_found_ar=yes
ac_cv_prog_found_latex=yes
ac_cv_prog_found_m4=yes
ac_cv_prog_found_ranlib=yes
ac_cv_prog_found_strip=yes
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=none
am_cv_CXX_dependencies_compiler_type=none
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
ax_cv_cxx_compile_cxx11=yes
ax_cv_gcc_version=7
ax_cv_gxx_version=7
ax_cv_prog_perl_version=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /home/tasos/sage-8.0/config/missing aclocal-1.15'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AUTOCONF='${SHELL} /home/tasos/sage-8.0/config/missing autoconf'
AUTOHEADER='${SHELL} /home/tasos/sage-8.0/config/missing autoheader'
AUTOMAKE='${SHELL} /home/tasos/sage-8.0/config/missing automake-1.15'
AWK='gawk'
CC='/usr/bin/cc'
CCDEPMODE='depmode=none'
CFLAGS='-g -O2'
CPP='/usr/bin/cc -E'
CPPFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=none'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DPACKAGE_NAME=\"Sage\" -DPACKAGE_TARNAME=\"sage\"
-DPACKAGE_VERSION=\"8.0.beta10\" -DPACKAGE_STRING=\"Sage\ 8.0.beta10\"
-DPACKAGE_BUGREPORT=\"sage-devel@googlegroups.com\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"sage\" -DVERSION=\"8.0.beta10\" -DSTDC_HEADERS=1
-DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1
-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1
-DHAVE_UNISTD_H=1 -DHAVE_CXX11=1 -DHAVE_LIBM=1'
DEPDIR='.deps'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
FC='gfortran'
FCFLAGS='-g -O2 -ffree-form'
GCC_VERSION='7'
GREP='/usr/bin/grep'
GXX_VERSION='7'
HAVE_CXX11='1'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS=''
LIBOBJS=''
LIBS='-lm '
LTLIBOBJS=''
MAINT=''
MAINTAINER_MODE_FALSE='#'
MAINTAINER_MODE_TRUE=''
MAKEINFO='${SHELL} /home/tasos/sage-8.0/config/missing makeinfo'
MKDIR_P='/usr/bin/mkdir -p'
OBJEXT='o'
PACKAGE='sage'
PACKAGE_BUGREPORT='sage-devel@googlegroups.com'
PACKAGE_NAME='Sage'
PACKAGE_STRING='Sage 8.0.beta10'
PACKAGE_TARNAME='sage'
PACKAGE_URL=''
PACKAGE_VERSION='8.0.beta10'
PATH_SEPARATOR=':'
PERL='/usr/bin/perl'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
VERSION='8.0.beta10'
ac_ct_CC='/usr/bin/cc'
ac_ct_CXX='g++'
ac_ct_FC='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE='#'
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
found_ar='yes'
found_latex='yes'
found_m4='yes'
found_ranlib='yes'
found_strip='yes'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/tasos/sage-8.0/config/install-sh'
libdir='${exec_prefix}/lib64'
libexecdir='${exec_prefix}/lib'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/tasos/sage-8.0/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "Sage"
#define PACKAGE_TARNAME "sage"
#define PACKAGE_VERSION "8.0.beta10"
#define PACKAGE_STRING "Sage 8.0.beta10"
#define PACKAGE_BUGREPORT "sage-devel@googlegroups.com"
#define PACKAGE_URL ""
#define PACKAGE "sage"
#define VERSION "8.0.beta10"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_CXX11 1
#define HAVE_LIBM 1
configure: exit 0
