Hi, I've got the following error compiling sage 8.0 under ubuntu 16.04.
I am also including the corresponding logs.
Best regards,
J
---------------------------------------------------------------------------------------------------------------------
Makefile:798: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/home/av/Downloads/sage-8.0/build/make'
real 5m18.242s
user 17m52.316s
sys 0m49.304s
***************************************************************
Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make all'):
* package: cython-0.25.2.p2
log file: /home/av/Downloads/sage-8.0/logs/pkgs/cython-0.25.2.p2.log
build directory:
/home/av/Downloads/sage-8.0/local/var/tmp/sage/build/cython-0.25.2.p2
* package: markupsafe-0.23.p0
log file: /home/av/Downloads/sage-8.0/logs/pkgs/markupsafe-0.23.p0.log
build directory:
/home/av/Downloads/sage-8.0/local/var/tmp/sage/build/markupsafe-0.23.p0
The build directory may contain configuration files and other potentially
helpful information. WARNING: if you now run 'make' again, the build
directory will, by default, be deleted. Set the environment variable
SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
Makefile:16: recipe for target 'all' failed
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Found local metadata for cython-0.25.2.p2
Using cached file /home/av/Downloads/sage-8.0/upstream/Cython-0.25.2.tar.gz
cython-0.25.2.p2
====================================================
Setting up build directory for cython-0.25.2.p2
Finished extraction
Applying patches from ../patches...
Applying ../patches/cdef_public_dll_linkage.patch
patching file Cython/Compiler/ModuleNode.py
Hunk #2 succeeded at 2861 (offset 13 lines).
Applying ../patches/cpdef_enums.pyx.patch
patching file tests/run/cpdef_enums.pyx
Applying ../patches/create_extension.patch
patching file Cython/Build/Dependencies.py
Hunk #1 succeeded at 636 (offset -1 lines).
Hunk #2 succeeded at 682 (offset -1 lines).
Hunk #3 succeeded at 709 (offset -1 lines).
Hunk #4 succeeded at 742 (offset -1 lines).
patching file Cython/Compiler/Main.py
patching file docs/src/reference/compilation.rst
Hunk #1 succeeded at 122 (offset -4 lines).
Hunk #2 succeeded at 160 (offset -4 lines).
patching file tests/compile/create_extension.srctree
Applying ../patches/dd0b10c7e31ea136632bfcfd46c925adcf4c4af6.patch
patching file tests/run/numpy_test.pyx
Applying ../patches/dd9eb10bc5657beed1f66221511c16ec6f4e517d.patch
patching file tests/run/numpy_test.pyx
Applying ../patches/include_dirs_from_externs.patch
patching file Cython/Build/Dependencies.py
Hunk #1 succeeded at 374 (offset -1 lines).
Hunk #2 succeeded at 498 (offset -1 lines).
Hunk #3 succeeded at 599 (offset -1 lines).
patching file tests/run/cimport_from_sys_path.srctree
Applying ../patches/pxi_sys_path.patch
patching file Cython/Compiler/Main.py
****************************************************
Host system:
Linux av-PORTEGE-R700 4.4.0-91-generic #114-Ubuntu SMP Tue Aug 8 11:56:56 UTC
2017 x86_64 x86_64 x86_64 GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
5.4.0-6ubuntu1~16.04.4' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs
--enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-5 --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes
--with-default-libstdcxx-abi=new --enable-gnu-unique-object
--disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib
--disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686
--with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib
--with-tune=generic --enable-checking=release --build=x86_64-linux-gnu
--host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.4)
****************************************************
Unable to find pgen, not compiling formal grammar.
Traceback (most recent call last):
File "/home/av/Downloads/sage-8.0/src/bin/pip2-lock", line 55, in <module>
load_entry_point('pip', 'console_scripts', 'pip2')()
File
"/home/av/Downloads/sage-8.0/local/lib/python2.7/site-packages/pkg_resources/__init__.py",
line 561, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File
"/home/av/Downloads/sage-8.0/local/lib/python2.7/site-packages/pkg_resources/__init__.py",
line 2630, in load_entry_point
raise ImportError("Entry point %r not found" % ((group, name),))
ImportError: Entry point ('console_scripts', 'pip2') not found
Error installing Cython
real 0m1.117s
user 0m0.988s
sys 0m0.084s
************************************************************************
Error installing package cython-0.25.2.p2
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the log file
/home/av/Downloads/sage-8.0/logs/pkgs/cython-0.25.2.p2.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/av/Downloads/sage-8.0/local/var/tmp/sage/build/cython-0.25.2.p2 and type
'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/av/Downloads/sage-8.0/local/var/tmp/sage/build/cython-0.25.2.p2'
&& '/home/av/Downloads/sage-8.0/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
Found local metadata for markupsafe-0.23.p0
Using cached file /home/av/Downloads/sage-8.0/upstream/markupsafe-0.23.tar.gz
markupsafe-0.23.p0
====================================================
Setting up build directory for markupsafe-0.23.p0
Finished extraction
No patch files found in ../patches
****************************************************
Host system:
Linux av-PORTEGE-R700 4.4.0-91-generic #114-Ubuntu SMP Tue Aug 8 11:56:56 UTC
2017 x86_64 x86_64 x86_64 GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
5.4.0-6ubuntu1~16.04.4' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs
--enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-5 --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes
--with-default-libstdcxx-abi=new --enable-gnu-unique-object
--disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib
--disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686
--with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib
--with-tune=generic --enable-checking=release --build=x86_64-linux-gnu
--host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.4)
****************************************************
Traceback (most recent call last):
File "/home/av/Downloads/sage-8.0/src/bin/pip2-lock", line 55, in <module>
load_entry_point('pip', 'console_scripts', 'pip2')()
File
"/home/av/Downloads/sage-8.0/local/lib/python2.7/site-packages/pkg_resources/__init__.py",
line 561, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File
"/home/av/Downloads/sage-8.0/local/lib/python2.7/site-packages/pkg_resources/__init__.py",
line 2630, in load_entry_point
raise ImportError("Entry point %r not found" % ((group, name),))
ImportError: Entry point ('console_scripts', 'pip2') not found
Error installing markupsafe ... exiting
real 0m1.087s
user 0m1.008s
sys 0m0.044s
************************************************************************
Error installing package markupsafe-0.23.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the log file
/home/av/Downloads/sage-8.0/logs/pkgs/markupsafe-0.23.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/av/Downloads/sage-8.0/local/var/tmp/sage/build/markupsafe-0.23.p0 and
type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/av/Downloads/sage-8.0/local/var/tmp/sage/build/markupsafe-0.23.p0'
&& '/home/av/Downloads/sage-8.0/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
