See https://trac.sagemath.org/ticket/22224

Weirdly, I have precisely this situation of having upgraded to El Capitan 
and not having upgraded my Sage, but LaTeX works fine, contra
"If you had an old version of TeX Live (2014 or earlier) and then upgraded 
your operating system to Sierra, TeX will no longer work."  but I haven't 
tried using the Mac app with it, as I use a locally compiled Sage for 
SageTeX.

On Friday, January 20, 2017 at 9:17:44 PM UTC-5, Michael Frey wrote:
>
> Yes, it appears to have the path hard coded somewhere. My global path does 
> contain /Library/TeX/texbin which appears to come from /etc/paths.d/TeX.
>
> I originally modified the 
> /Applications/SageMath-7.5.1.app/Contents/Resources/start-sage.sh 
> file. I then modified the src/mac-app/start-sage.sh file and rebuilt the 
> Sage app dmg to test that this would install without problems.
>
> The only references I can find in the sage source tree are in several 
> copies of same file, loading-page.html:
>
> adding <code>os.environ["PATH"]+=":/usr/texbin:/usr/local/bin"</code> to 
> <code>$HOME/.sage/init.sage</code></p>
>
>
> My system does not have a ~/.sage/init.sage file.
>

That's because not everyone does.  IF you had an init.sage, one would want 
to do that, I guess. 

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