Thanks for the report.
Sage has an experimental polymake 
package: https://trac.sagemath.org/ticket/20892

Not sure if we ever checked how well it lives together with Singular --- 
but we should.

On Thursday, January 12, 2017 at 10:53:19 AM UTC, moritz wrote:
>
> I figured out what the problem was: I had a version of polymake installed 
> (3.0.6) and singular checks for a polymake install. However when I removed 
> polymake and polymake-config from /usr/local/bin sage could be build 
> successfully. When configuring singular one could also pass the 
> --disable-polymake flag. 
>
> I hope somebody with a similar problem might find this useful.. 
>
>

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