I tried the gcd of the 2 polynomials from Bill Hart, I get 
2*z^33*y^6*x^1078*t^15-14*z^
24*y^6*x^80*t^15+z^20*y^4*x^1003+z^20*y^3*x^1100+z^20*y^3*x^1000-2*z^13*y^3*x^79*t^16+78*z^13*y^3*x^78*t^15-7*z^11*y^4*x^5-7*z^11*y^3*x^102-7*z^11*y^3*x^2-y*x^4*t+39*y*x^3-x^101*t+39*x^100-x*t+39
after 20s using the modgcd command of giac (I'll have to check the 
heuristics in my gcd code because gcd was trying psrgcd...)
Back to the multivariate factorization problem: I have I think good dense 
multivariate factorization in giac (comparable to the current versions of 
Maple, I did not check with singular). But I believe that this problem is 
really a sparse multivariate factorization problem, because if you try to 
do Hensel lift you must translate the polynomials otherwise the factors you 
get are not coprime and you can not lift. But translating will densify the 
polynomial a lot. 
And the evidence is that it requires more advanced sparse algorithms than 
the current implementation of giac (and singular).

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