> sounds like the first "make" failed...

That's not clear to me. The compile of Sage itself seemed to work but
then make failed during doc-building. This has happened so often during
the years I've worked with Sage, however, that I've learned to ignore
it. Inspecting the error now, I see that this time it has to do with the
missing jmol-package.

Inspecting install.log, I it seems that everything before seems to have
compiled. jmol, sympy, etc. are never mentioned once in the install.log.

A disturbing thing though is that the following line appears a lot:

ar: /usr/lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by 
/usr/lib/libLLVM-3.8.so)

as well as:

ranlib: /usr/lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required 
by /usr/lib/libLLVM-3.8.so)

However, the packages being compiled report that everything went alright
afterwards. I don't know what the errors mean. I have the Arch linux package
gcc-libs 5.3.0-5 installed.

The install.log is huge and I don't know what might be relevant. I've
put the whole thing here:

http://atuin.dk/install.log.zip

Best,
Johan

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