My computer is a MacBook Pro, with an Intel core i7 running OS X 10.9.5. Xcode and Command Line Tools updated yesterday. I'm trying to build sage from source code using make. On the first attempt I got an error indicating I should move opt/local. This was done. Second attempt produced Error building/tuning NTL. log file attached.
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Found local metadata for ntl-9.8.1.p0 Attempting to download package ntl-9.8.1.tar.bz2 from mirrors http://mirrors.mit.edu/sage/spkg/upstream/ntl/ntl-9.8.1.tar.bz2 [......................................................................] ntl-9.8.1.p0 ==================================================== Setting up build directory for ntl-9.8.1.p0 Finished set up **************************************************** Host system: Darwin hundleymac.local 13.4.0 Darwin Kernel Version 13.4.0: Sun Aug 17 19:50:11 PDT 2014; root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64 **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/Users/jahundle/sage/local/libexec/gcc/x86_64-apple-darwin13.4.0/4.9.3/lto-wrapper Target: x86_64-apple-darwin13.4.0 Configured with: ../src/configure --prefix=/Users/jahundle/sage/local --with-local-prefix=/Users/jahundle/sage/local --with-gmp=/Users/jahundle/sage/local --with-mpfr=/Users/jahundle/sage/local --with-mpc=/Users/jahundle/sage/local --with-system-zlib --disable-multilib --disable-nls --enable-languages=c,c++,fortran --disable-libitm --with-build-config=bootstrap-debug --without-isl --without-cloog Thread model: posix gcc version 4.9.3 (GCC) **************************************************** Applying patches to NTL. patching file src/DoConfig Hunk #1 succeeded at 25 (offset -14 lines). patching file src/mfile Hunk #1 succeeded at 39 (offset 3 lines). Hunk #2 succeeded at 374 (offset 6 lines). patching file src/mfile Hunk #1 succeeded at 328 (offset 3 lines). Hunk #2 succeeded at 341 (offset 3 lines). Hunk #3 succeeded at 368 (offset 10 lines). Hunk #4 succeeded at 412 (offset 15 lines). patching file src/WizardAux Hunk #3 succeeded at 353 (offset 99 lines). patching file include/NTL/new.h Hunk #1 succeeded at 5 (offset -7 lines). Generating libtool. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-apple-darwin13.4.0 checking host system type... x86_64-apple-darwin13.4.0 checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin13.4.0 file names to x86_64-apple-darwin13.4.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin13.4.0 file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... cpp checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.4.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... ld checking if the linker (ld) is GNU ld... no checking whether the g++ linker (ld) supports shared libraries... yes checking for g++ option to produce PIC... -fno-common -DPIC checking if g++ PIC flag -fno-common -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.4.0 dyld checking how to hardcode library paths into programs... immediate checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands Configuring NTL. Setting SHAREDFLAGS to '-fno-common' ***** checking for libtool ***** libtool (GNU libtool) 2.4.2 Written by Gordon Matzigkeit <g...@gnu.ai.mit.edu>, 1996 Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ***** libtool OK ***** *** checking -march=native flag CXXAUTOFLAGS=" -march=native" *** -march=native works CXXAUTOFLAGS=" -march=native" Tuning and building NTL. make setup1 g++ -I../include -I. -march=native -O2 -g -fno-common -c MakeDescAux.c /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccvGKO5e.s:124:no such instruction: `vmovsd %xmm0, -16(%rsp)' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccvGKO5e.s:259:no such instruction: `vxorpd %xmm0, %xmm0,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccvGKO5e.s:264:no such instruction: `vaddsd (%rdi), %xmm0,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccvGKO5e.s:274:no such instruction: `vxorpd %xmm0, %xmm0,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccvGKO5e.s:295:no such instruction: `vfmadd132sd %xmm1, %xmm2,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccvGKO5e.s:319:no such instruction: `vmovsd LC18(%rip), %xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccvGKO5e.s:329:no such instruction: `vaddsd %xmm0, %xmm0,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccvGKO5e.s:338:no such instruction: `vmovsd LC18(%rip), %xmm0' make[4]: *** [setup1] Error 1 make[3]: *** [all] Error 2 Error building/tuning NTL. real 0m3.483s user 0m1.598s sys 0m1.910s ************************************************************************ Error installing package ntl-9.8.1.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /Users/jahundle/sage/logs/pkgs/ntl-9.8.1.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /Users/jahundle/sage/local/var/tmp/sage/build/ntl-9.8.1.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/Users/jahundle/sage/local/var/tmp/sage/build/ntl-9.8.1.p0' && '/Users/jahundle/sage/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for ntl-9.8.1.p0 Using cached file /Users/jahundle/sage/upstream/ntl-9.8.1.tar.bz2 ntl-9.8.1.p0 ==================================================== Moving old directory ntl-9.8.1.p0 to /Users/jahundle/sage/local/var/tmp/sage/build/old... Setting up build directory for ntl-9.8.1.p0 Finished set up **************************************************** Host system: Darwin hundleymac.local 13.4.0 Darwin Kernel Version 13.4.0: Sun Aug 17 19:50:11 PDT 2014; root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64 **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/Users/jahundle/sage/local/libexec/gcc/x86_64-apple-darwin13.4.0/4.9.3/lto-wrapper Target: x86_64-apple-darwin13.4.0 Configured with: ../src/configure --prefix=/Users/jahundle/sage/local --with-local-prefix=/Users/jahundle/sage/local --with-gmp=/Users/jahundle/sage/local --with-mpfr=/Users/jahundle/sage/local --with-mpc=/Users/jahundle/sage/local --with-system-zlib --disable-multilib --disable-nls --enable-languages=c,c++,fortran --disable-libitm --with-build-config=bootstrap-debug --without-isl --without-cloog Thread model: posix gcc version 4.9.3 (GCC) **************************************************** Applying patches to NTL. patching file src/DoConfig Hunk #1 succeeded at 25 (offset -14 lines). patching file src/mfile Hunk #1 succeeded at 39 (offset 3 lines). Hunk #2 succeeded at 374 (offset 6 lines). patching file src/mfile Hunk #1 succeeded at 328 (offset 3 lines). Hunk #2 succeeded at 341 (offset 3 lines). Hunk #3 succeeded at 368 (offset 10 lines). Hunk #4 succeeded at 412 (offset 15 lines). patching file src/WizardAux Hunk #3 succeeded at 353 (offset 99 lines). patching file include/NTL/new.h Hunk #1 succeeded at 5 (offset -7 lines). Generating libtool. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-apple-darwin13.4.0 checking host system type... x86_64-apple-darwin13.4.0 checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin13.4.0 file names to x86_64-apple-darwin13.4.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin13.4.0 file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... cpp checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.4.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... ld checking if the linker (ld) is GNU ld... no checking whether the g++ linker (ld) supports shared libraries... yes checking for g++ option to produce PIC... -fno-common -DPIC checking if g++ PIC flag -fno-common -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.4.0 dyld checking how to hardcode library paths into programs... immediate checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands Configuring NTL. Setting SHAREDFLAGS to '-fno-common' ***** checking for libtool ***** libtool (GNU libtool) 2.4.2 Written by Gordon Matzigkeit <g...@gnu.ai.mit.edu>, 1996 Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ***** libtool OK ***** *** checking -march=native flag CXXAUTOFLAGS=" -march=native" *** -march=native works CXXAUTOFLAGS=" -march=native" Tuning and building NTL. make setup1 g++ -I../include -I. -march=native -O2 -g -fno-common -c MakeDescAux.c /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccospAqH.s:124:no such instruction: `vmovsd %xmm0, -16(%rsp)' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccospAqH.s:259:no such instruction: `vxorpd %xmm0, %xmm0,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccospAqH.s:264:no such instruction: `vaddsd (%rdi), %xmm0,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccospAqH.s:274:no such instruction: `vxorpd %xmm0, %xmm0,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccospAqH.s:295:no such instruction: `vfmadd132sd %xmm1, %xmm2,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccospAqH.s:319:no such instruction: `vmovsd LC18(%rip), %xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccospAqH.s:329:no such instruction: `vaddsd %xmm0, %xmm0,%xmm0' /var/folders/w2/d76csvw138zgq0v8s64x5dh00000gq/T//ccospAqH.s:338:no such instruction: `vmovsd LC18(%rip), %xmm0' make[4]: *** [setup1] Error 1 make[3]: *** [all] Error 2 Error building/tuning NTL. real 0m3.743s user 0m1.648s sys 0m1.855s ************************************************************************ Error installing package ntl-9.8.1.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /Users/jahundle/sage/logs/pkgs/ntl-9.8.1.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /Users/jahundle/sage/local/var/tmp/sage/build/ntl-9.8.1.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/Users/jahundle/sage/local/var/tmp/sage/build/ntl-9.8.1.p0' && '/Users/jahundle/sage/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
