A fixed version (you can run sagemath-upstream-binary without the -full) is now busy copying from the dev PPA to the stable PPA.
7.0~aimsppa1~qa201602060140061 Regards, Jan On 3 February 2016 at 17:46, Jan Groenewald <j...@aims.ac.za> wrote: > Hi > > TL;DR install sagemath-upstream-binary-full for a fix. The error in 6.9 is > harmless as only one unimportant file is missing. > > > > The development PPA now has a working sagemath-upstream-binary-full 7.0 > with no error at all. > https://launchpad.net/~aims/+archive/ubuntu/sagemath-dev > When it runs the relocate-once.py after install, it takes (quite) a while > to patch and then prints message: > > ... > patching > /usr/lib/sagemath/local/lib/python2.7/site-packages/sage/ext/pselect.so > patching /usr/lib/sagemath/local/lib/libstdc++.so.6.0.20 > * AIMS PPA: relocate-once.py finished running. Ignore above Exception > ┌────────────────────────────────────────────────────────────────────┐ > │ SageMath Version 7.0, Release Date: 2016-01-19 │ > │ Type "notebook()" for the browser-based notebook interface. │ > │ Type "help()" for help. │ > └────────────────────────────────────────────────────────────────────┘ > sage: Exiting Sage (CPU time 0m0.02s, Wall time 0m0.10s). > Setting up sagemath-upstream-binary-full (7.0~aimsppa1~qa201602031255151) > ... > 0 root@muizenberg:~# > > Even though there is no exception; I added that warning before putting > this out. This is because I added one missing file to > sagemath-binary-upstream ($SAGE_ROOT/builId/make/Makefile). This version > will be uploaded to the stable PPA in a week or two depending on feedback. > > The smaller bandwidth-saving and disk-saving sagemath-upstream-binary 7.0 > (no -full in the name) is also there (basically excluding most of the > $SAGE_ROOT/src folder), but will still give the error: > > OSError: [Errno 2] No such file or directory: > '/usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c' > > After that the debian/postinst will then try to run sage once, then stop, > as not nearly enough paths were patched. Even removing relocate-once.py is > not enough: > > ┌────────────────────────────────────────────────────────────────────┐ > │ SageMath Version 7.0, Release Date: 2016-01-19 │ > │ Type "notebook()" for the browser-based notebook interface. │ > │ Type "help()" for help. │ > └────────────────────────────────────────────────────────────────────┘ > > ERROR: The Sage installation tree has moved > > from > /mnt/highperf/buildbot/slave/binary_pkg/build/source/SageMath/jc4b6yulaujayb9sr94ia88eourzeqip0oidma > to /usr/lib/sagemath > > This is not supported, and Sage will not work. To install Sage from a > binary package: > > 1. Open the .tar.bz2 archive (or .dmg on OSX) > > 2. Move the SageMath folder/app to where you want it to be. You can > also rename the directory now. > > 3. Start sage for the first time. This will then automatically patch > paths in binaries. > > After starting Sage for the first time you cannot change the > installation any more. To install Sage elsewhere, start over from the > binary package. Or recompile Sage from scratch in the new location > ("make distclean && make") > > dpkg: error processing package sagemath-upstream-binary (--configure): > subprocess installed post-installation script returned error exit status 1 > Errors were encountered while processing: > sagemath-upstream-binary > E: Sub-process /usr/bin/dpkg returned an error code (1) > root@alice-laptop:~# > root@alice-laptop:~# ls /usr/lib/sagemath/ > COPYING.txt README.txt VERSION.txt build local relocate-once.py > sage src > root@alice-laptop:~# rm /usr/lib/sagemath/relocate-once.py > root@alice-laptop:~# sage > ┌────────────────────────────────────────────────────────────────────┐ > │ SageMath Version 7.0, Release Date: 2016-01-19 │ > │ Type "notebook()" for the browser-based notebook interface. │ > │ Type "help()" for help. │ > └────────────────────────────────────────────────────────────────────┘ > > ERROR: The Sage installation tree has moved > > from > /mnt/highperf/buildbot/slave/binary_pkg/build/source/SageMath/jc4b6yulaujayb9sr94ia88eourzeqip0oidma > to /usr/lib/sagemath > > This is not supported, and Sage will not work. To install Sage from a > binary package: > > 1. Open the .tar.bz2 archive (or .dmg on OSX) > > 2. Move the SageMath folder/app to where you want it to be. You can > also rename the directory now. > > 3. Start sage for the first time. This will then automatically patch > paths in binaries. > > After starting Sage for the first time you cannot change the > installation any more. To install Sage elsewhere, start over from the > binary package. Or recompile Sage from scratch in the new location > ("make distclean && make") > > root@alice-laptop:~# apt-get install sagemath-upstream-binary-full > > The workaround is to install sagemath-upstream-binary-full (and in 6.9 to > ignore the error). > > It is possible to install the 7.0 now from the dev PPA and then to disable > it: > > sudo apt-add-repository -y ppa:aims/sagemath-dev > sudo apt-get update > sudo apt-get install sagemath-upstream-binary-full > sudo mv /etc/apt/sources.list.d/aims-sagemath-dev-trusty.list{,.disabled} > > Notes: > > The plan is (probably) for 7.1 is to move the relocate-once.py out of the > first run of sage during debian/postinst, and to do it in our autobuild.sh > before it runs dpkg-buildpackage to prepare the source package for upload > to the PPA. This way we can keep both the larger and smaller versions. > > If you are going to do the unwise and unsupported thing of compiling > optional packages as root on dpkg-owned directory, you will need the -full > package. We plan to change the user owning the files so that even if we > break debsums we don't have to compile as root to customize a PPA install. > > I have no idea where to start, but perhaps there should be a ticket to > make sage relocatable? Patching paths in binaries after compilation blows > my mind. > > Regards, > Jan > > -- > .~. > /V\ Jan Groenewald > /( )\ www.aims.ac.za > ^^-^^ > > -- .~. /V\ Jan Groenewald /( )\ www.aims.ac.za ^^-^^ -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. 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