Re: possibly needing to install Xcode: I installed it. restarted machine. ran 'make distclean' then ran 'make'. Same problem. two files (float.h and stdarg.h) that cannot be found, though they exist.
'xcode-select --version' and 'gcc --version' return the same output as I mentioned before. Here are the logs, in full. ~~~~~~~ ~~~ mpfr ~~~~~~~~~~~~~~~~~~ Found local metadata for mpfr-3.1.2.p0 Found local sources at /Users/lauve/sage-devel/upstream/mpfr-3.1.2.tar.bz2 Checksum: e70341aa7974b4ba1023c75c750aca68222b0723 vs e70341aa7974b4ba1023c75c750aca68222b0723 mpfr-3.1.2.p0 ==================================================== Setting up build directory for mpfr-3.1.2.p0 Finished set up **************************************************** Host system: Darwin weehawken.local 14.3.0 Darwin Kernel Version 14.3.0: Mon Mar 23 11:59:05 PDT 2015; root:xnu-2782.20.48~5/RELEASE_X86_64 x86_64 **************************************************** C compiler: /usr/bin/clang C compiler version: Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) Target: x86_64-apple-darwin14.3.0 Thread model: posix **************************************************** Patching MPFR... Now configuring MPFR... Checking what CC and CFLAGS MPFR would use if they were empty... Settings chosen by MPFR when configuring with CC and CFLAGS unset: CC: /usr/bin/gcc CFLAGS: -Wall -Wmissing-prototypes -Wpointer-arith -m64 -O2 -march=corei7-avx -mtune=corei7-avx -g Settings required to properly build MPFR, taking into account SAGE_DEBUG etc.: CFLAGS: LDFLAGS: ABI: Settings from the "global" environment: CC: /usr/bin/clang CFLAGS: (CPPFLAGS, CXX and CXXFLAGS are listed below; these don't get modified.) Using MPFR's settings (plus mandatory ones). Finally using the following settings: CC=/usr/bin/clang CFLAGS=-Wall -Wmissing-prototypes -Wpointer-arith -m64 -O2 -march=corei7-avx -mtune=corei7-avx -g CPP= CPPFLAGS= CXX=/usr/bin/clang++ CXXFLAGS= LDFLAGS= ABI= (These settings may still get overridden by 'configure' or Makefiles.) Configuring MPFR with the following options: --prefix="/Users/lauve/sage-devel/local" --libdir="/Users/lauve/sage-devel/local/lib" --with-gmp="/Users/lauve/sage-devel/local" --disable-thread-safe You can set MPFR_CONFIGURE to pass additional parameters. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking build system type... x86_64-apple-darwin14.3.0 checking host system type... x86_64-apple-darwin14.3.0 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for a sed that does not truncate output... /usr/bin/sed checking for gcc... /usr/bin/clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/clang accepts -g... yes checking for /usr/bin/clang option to accept ISO C89... unsupported checking for style of include used by make... GNU checking dependency style of /usr/bin/clang... gcc3 checking how to run the C preprocessor... /usr/bin/clang -E checking for ICC... no checking whether /usr/bin/clang and cc understand -c and -o together... rm: conftest.dSYM: is a directory yes checking if the compiler understands -Wl,-search_paths_first... yes checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for main in -lm... yes checking whether time.h and sys/time.h may both be included... yes checking for ANSI C header files... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking float.h usability... no checking float.h presence... no checking for float.h... no configure: error: float.h not found Error configuring MPFR. See above for the options passed to it, and the file /Users/lauve/sage-devel/local/var/tmp/sage/build/mpfr-3.1.2.p0/src/config.log for details. real 0m26.664s user 0m10.775s sys 0m9.652s ************************************************************************ Error installing package mpfr-3.1.2.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /Users/lauve/sage-devel/logs/pkgs/mpfr-3.1.2.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /Users/lauve/sage-devel/local/var/tmp/sage/build/mpfr-3.1.2.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/Users/lauve/sage-devel/local/var/tmp/sage/build/mpfr-3.1.2.p0' && '/Users/lauve/sage-devel/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ ~~~~~~~ ~~~ zlib ~~~~~~~~~~~~~~~~~~ Found local metadata for zlib-1.2.8.p0 Found local sources at /Users/lauve/sage-devel/upstream/zlib-1.2.8.tar.bz2 Checksum: e63277b761e138a75f8c6a9ededb8d95198739a7 vs e63277b761e138a75f8c6a9ededb8d95198739a7 zlib-1.2.8.p0 ==================================================== Setting up build directory for zlib-1.2.8.p0 Finished set up **************************************************** Host system: Darwin weehawken.local 14.3.0 Darwin Kernel Version 14.3.0: Mon Mar 23 11:59:05 PDT 2015; root:xnu-2782.20.48~5/RELEASE_X86_64 x86_64 **************************************************** C compiler: /usr/bin/clang C compiler version: Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) Target: x86_64-apple-darwin14.3.0 Thread model: posix **************************************************** cygwin_symbols.patch patching file win32/zlib.def Checking for shared library support... Building shared library libz.1.2.8.dylib with /usr/bin/clang. Checking for off64_t... No. Checking for fseeko... Yes. Checking for strerror... Yes. Checking for unistd.h... Yes. Checking for stdarg.h... No. Checking whether to use vs[n]printf() or s[n]printf()... using s[n]printf(). Checking for snprintf() in stdio.h... Yes. Checking for return value of snprintf()... Yes. Checking for attribute(visibility) support... Yes. /usr/bin/clang -O3 -DHAVE_HIDDEN -I. -c -o example.o test/example.c /usr/bin/clang -O3 -DHAVE_HIDDEN -c -o adler32.o adler32.c /usr/bin/clang -O3 -DHAVE_HIDDEN -c -o crc32.o crc32.c In file included from test/example.c:8: In file included from ./zlib.h:34: ./zconf.h:427:14: fatal error: 'stdarg.h' file not found # include <stdarg.h> /* for va_list */ ^ In file included from crc32.c:31: In file included from ./zutil.h:22: In file included from ./zlib.h:34: ./zconf.h:427:14: fatal error: 'stdarg.h' file not found # include <stdarg.h> /* for va_list */ ^ In file included from adler32.c:8: In file included from ./zutil.h:22: In file included from ./zlib.h:34: ./zconf.h:427:14: fatal error: 'stdarg.h' file not found # include <stdarg.h> /* for va_list */ ^ 1 error generated. make[3]: *** [adler32.o] Error 1 make[3]: *** Waiting for unfinished jobs.... 1 error generated. make[3]: 1 error*** [example.o] Error 1 generated. make[3]: *** [crc32.o] Error 1 Error building zlib. real 0m1.231s user 0m0.485s sys 0m0.497s ************************************************************************ Error installing package zlib-1.2.8.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /Users/lauve/sage-devel/logs/pkgs/zlib-1.2.8.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /Users/lauve/sage-devel/local/var/tmp/sage/build/zlib-1.2.8.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/Users/lauve/sage-devel/local/var/tmp/sage/build/zlib-1.2.8.p0' && '/Users/lauve/sage-devel/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ On Thursday, June 18, 2015 at 3:29:17 PM UTC-5, Volker Braun wrote: > > The actual logs of whatever failed > > On Thursday, June 18, 2015 at 8:56:56 PM UTC+2, la...@math.luc.edu wrote: >> >> will install Xcode and get back to you. in the meantime, did you just >> want a directory listing, or the actual logs? >> >> weehawken:sage-devel lauve$ ls logs/pkgs/ >> bzip2-1.0.6.20140317.log mpfr-3.1.2.p0.log pkgconf-0.9.7.log >> config.log mpir-2.7.0-alpha12.log zlib-1.2.8.p0.log >> >> iconv-1.14.log patch-2.7.1.log >> >> >> >> On Thursday, June 18, 2015 at 1:27:43 PM UTC-5, Volker Braun wrote: >>> >>> I think you need to have XCode installed, even though you shouldn't have >>> to. >>> >>> Can you also post logs (in SAGE_ROOT/logs/pkgs/) >>> >>> >>> On Thursday, June 18, 2015 at 7:29:56 PM UTC+2, la...@math.luc.edu >>> wrote: >>>> >>>> Okay... >>>> I am now running 10.10.3. >>>> to try to get a clean version of tools, I deleted the following three >>>> directories: >>>> * /Applications/Xcode.app >>>> * /Library/Developer/CommandLineTools >>>> * /usr/include/c++ >>>> I ran xcode-select --install from the command line. A pop up asked me >>>> to install. I did. >>>> Now /Library/Developer/CommandLineTools and /usr/include/c++ have >>>> returned. >>>> (note that I do not have XCode.app at present) >>>> >>>> Still, in my sage source directory, when I run make -j4, I get errors. >>>> (Setting SAGE_KEEP_BUILT_SPKGS='yes' doesn't eliminate the problem.) >>>> >>>> There are errors in the packages *mpfr-3.1.2.p0* and *zlib-1.2.8.p0*. >>>> >>>> In my logs, the packages seem not to be able to find files that I'm >>>> sure are there: *float.h* and *stdarg.h* >>>> indeed, there is some general checks that flew by earlier in the build >>>> process to the effect, >>>> >>>> checking float.h usability... yes >>>> >>>> checking float.h presence... yes >>>> checking for float.h... yes >>>> >>>> Yet, mpfr cannot find it. Similarly, earlier in the 'make' process, I >>>> saw fly by the line >>>> >>>> checking whether <stdarg.h> exists and works... yes >>>> >>>> >>>> >>>> new output of gcc --version : >>>> >>>> Configured with: --prefix=/Library/Developer/CommandLineTools/usr >>>> --with-gxx-include-dir=/usr/include/c++/4.2.1 >>>> >>>> Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) >>>> >>>> Target: x86_64-apple-darwin14.3.0 >>>> >>>> Thread model: posix >>>> >>>> >>>> (note: both of the directories mentioned do exist. The files *float.h* >>>> and *stdarg.h* exist in: >>>> >>>> * /Library/Developer/CommandLineTools/usr/lib/clang/6.1.0/include/ >>>> >>>> >>>> * /usr/include/c++/4.2.1/tr1/ >>>> >>>> among other places) >>>> >>>> >>>> output of xcode-select --version : >>>> >>>> xcode-select version 2333 >>>> >>>> >>>> >>>> output of locate stdarg.h : >>>> >>>> /Applications/local/include/c++/4.6.3/tr1/stdarg.h >>>> >>>> >>>> /Applications/local/lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/include/cross-stdarg.h >>>> >>>> >>>> /Applications/local/lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/include/stdarg.h >>>> >>>> >>>> >>>> /Library/Developer/CommandLineTools/Library/PrivateFrameworks/LLDB.framework/Versions/A/Resources/Clang/include/stdarg.h >>>> >>>> /Library/Developer/CommandLineTools/usr/lib/clang/6.1.0/include/stdarg.h >>>> >>>> >>>> /Library/Developer/CommandLineTools/usr/lib/llvm-gcc/4.2.1/include/stdarg.h >>>> >>>> /System/Library/Frameworks/Kernel.framework/Versions/A/Headers/stdarg.h >>>> >>>> >>>> /System/Library/Frameworks/OpenCL.framework/Versions/A/lib/clang/2.0/include/stdarg.h >>>> >>>> /usr/include/c++/4.2.1/tr1/stdarg.h >>>> >>>> >>>> output of locate float.h : >>>> >>>> /Applications/gap4r4/src/float.h >>>> >>>> /Applications/local/include/c++/4.6.3/tr1/float.h >>>> >>>> /Applications/local/lib/gap-4.4.12/src/float.h >>>> >>>> >>>> /Applications/local/lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/include/float.h >>>> >>>> >>>> /Library/Developer/CommandLineTools/Library/PrivateFrameworks/LLDB.framework/Versions/A/Resources/Clang/include/float.h >>>> >>>> /Library/Developer/CommandLineTools/usr/lib/clang/6.1.0/include/float.h >>>> >>>> >>>> /System/Library/Frameworks/OpenCL.framework/Versions/A/lib/clang/2.0/include/float.h >>>> >>>> /usr/include/c++/4.2.1/tr1/float.h >>>> >>>> >>>> >>>> Any further ideas? >>>> >>>> >>>> >>>> On Wednesday, June 10, 2015 at 2:56:55 PM UTC-5, Volker Braun wrote: >>>>> >>>>> Since Apple declined to fix the "rootpipe" bug in OSX 10.9 I would >>>>> recommend to upgrade to OSX 10.10 asap, effectively you don't receive >>>>> security fixes any more. >>>>> >>>>> Even then, why did you not upgrade to command line tools 6.2? They >>>>> should still run on OSX 10.9 >>>>> >>>>> >>>>> On Wednesday, June 10, 2015 at 7:43:14 PM UTC+2, la...@math.luc.edu >>>>> wrote: >>>>>> >>>>>> Volkar: >>>>>> Here's more info: >>>>>> >>>>>> weehawken:sage-git lauve$ gcc --version >>>>>> >>>>>> Configured with: >>>>>> --prefix=/Applications/Xcode.app/Contents/Developer/usr >>>>>> --with-gxx-include-dir=/usr/include/c++/4.2.1 >>>>>> >>>>>> Apple LLVM version 6.0 (clang-600.0.56) (based on LLVM 3.5svn) >>>>>> >>>>>> Target: x86_64-apple-darwin13.4.0 >>>>>> >>>>>> Thread model: posix >>>>>> >>>>>> >>>>>> weehawken:sage-git lauve$ which gcc >>>>>> >>>>>> /usr/bin/gcc >>>>>> >>>>>> >>>>>> Note: the 'prefix' it points to is not where I have installed the >>>>>> most recent version of command line tools, but I moved the 'usr' folder >>>>>> there to 'usr.old', created a symbolic link to '/usr' and tried again. >>>>>> The >>>>>> error persists: "float.h not found" >>>>>> >>>>>> >>>>>> >>>>>> On Wednesday, June 10, 2015 at 10:32:30 AM UTC-5, Volker Braun wrote: >>>>>>> >>>>>>> CommandLineTools for XCode 6.1.1 is old and buggy... Also, are you >>>>>>> sure you are using the compiler you think you are using? You can have >>>>>>> multiple ones. Output of gcc --version? >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Wednesday, June 10, 2015 at 4:37:13 PM UTC+2, Anne Schilling >>>>>>> wrote: >>>>>>>> >>>>>>>> Hello, >>>>>>>> >>>>>>>> Aaron Lauve at Sage Days 65 is having trouble installing >>>>>>>> development version of Sage on my Mac. >>>>>>>> (OSX10.9.5, with CommandLineTools for XCode 6.1.1 installed) >>>>>>>> >>>>>>>> The error is "Error installing package mpfr-3.1.2.p0" >>>>>>>> >>>>>>>> Here is the tail of the log file created, which seems to point to >>>>>>>> not finding float.h >>>>>>>> (But it can be located on my machine with "locate float.h" from / >>>>>>>> directory.) >>>>>>>> >>>>>>>> ~~~~~~~ >>>>>>>> >>>>>>>> checking for limits.h... yes >>>>>>>> >>>>>>>> checking float.h usability... no >>>>>>>> >>>>>>>> checking float.h presence... no >>>>>>>> >>>>>>>> checking for float.h... no >>>>>>>> >>>>>>>> configure: error: float.h not found >>>>>>>> >>>>>>>> Error configuring MPFR. >>>>>>>> >>>>>>>> See above for the options passed to it, and the file >>>>>>>> >>>>>>>> >>>>>>>> /Users/lauve/sage-git/local/var/tmp/sage/build/mpfr-3.1.2.p0/src/config.log >>>>>>>> >>>>>>>> >>>>>>>> for details. >>>>>>>> >>>>>>>> >>>>>>>> real 0m15.066s >>>>>>>> >>>>>>>> user 0m6.600s >>>>>>>> >>>>>>>> sys 0m5.934s >>>>>>>> >>>>>>>> ************************************************************************ >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Error installing package mpfr-3.1.2.p0 >>>>>>>> >>>>>>>> ************************************************************************ >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Please email sage-devel (http://groups.google.com/group/sage-devel) >>>>>>>> >>>>>>>> >>>>>>>> explaining the problem and including the relevant part of the log >>>>>>>> file >>>>>>>> >>>>>>>> /Users/lauve/sage-git/logs/pkgs/mpfr-3.1.2.p0.log >>>>>>>> >>>>>>>> Describe your computer, operating system, etc. >>>>>>>> >>>>>>>> If you want to try to fix the problem yourself, *don't* just cd to >>>>>>>> >>>>>>>> /Users/lauve/sage-git/local/var/tmp/sage/build/mpfr-3.1.2.p0 and >>>>>>>> type 'make' or whatever is appropriate. >>>>>>>> >>>>>>>> Instead, the following commands setup all environment variables >>>>>>>> >>>>>>>> correctly and load a subshell for you to debug the error: >>>>>>>> >>>>>>>> (cd >>>>>>>> '/Users/lauve/sage-git/local/var/tmp/sage/build/mpfr-3.1.2.p0' && >>>>>>>> '/Users/lauve/sage-git/sage' --sh) >>>>>>>> >>>>>>>> When you are done debugging, you can type "exit" to leave the >>>>>>>> subshell. >>>>>>>> >>>>>>>> ************************************************************************ >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Any suggestions? >>>>>>>> >>>>>>>> Best, >>>>>>>> >>>>>>>> Anne >>>>>>>> >>>>>>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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