When building python it does complain about not finding _sqlite3 along with
_bsddb _sqlite3 _ssl bsddb185 dbm dl gdbm imageop linuxaudiodev nis ossaudiodev spwd sunaudiodev Could this be because I have the anaconda python distribution shadowing the base python distribution? This is presumably a bad idea. If I run python from the command line it does find _sqlite3 though. I'll try removing anaconda from my path and see what happens. Thanks for the help. On Tuesday, March 31, 2015 at 2:50:38 PM UTC-4, John H Palmieri wrote: > > > > On Tuesday, March 31, 2015 at 11:31:42 AM UTC-7, David Einstein wrote: >> >> The sqlite package seems to have installed correctly. Log attached. >> > > On OS X, Sage's sqlite package just creates a link to the pre-existing > file /usr/bin/sqlite3. The error mentioned "_sqlite3", which is a Python > module and it is supposed to be installed as part of Sage's Python package. > There might have been an error message in the Python log file about > building _sqlite3. > > >> I am guilty of having a homebrew sqlite (It was quarantined in the >> Cellar) I have removed it and will try to recompile from scratch. >> >> >> Found local metadata for sqlite-3.8.4.3 >> Attempting to download package sqlite-3.8.4.3 >> >>> Trying to download >> http://www.sagemath.org/packages/upstream/sqlite/sqlite-3.8.4.3.tar.bz2 >> % Total % Received % Xferd Average Speed Time Time Time >> Current >> Dload Upload Total Spent Left >> Speed >> >> 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- >> 0 >> 1 1433k 1 23376 0 0 37081 0 0:00:39 --:--:-- 0:00:39 >> 37045 >> 35 1433k 35 506k 0 0 324k 0 0:00:04 0:00:01 0:00:03 >> 324k >> 100 1433k 100 1433k 0 0 616k 0 0:00:02 0:00:02 --:--:-- >> 616k >> Checksum: d721fb8c43d91321b58f020a06351d15b321b2a3 vs >> d721fb8c43d91321b58f020a06351d15b321b2a3 >> sqlite-3.8.4.3 >> ==================================================== >> Setting up build directory for sqlite-3.8.4.3 >> Finished set up >> **************************************************** >> Host system: >> Darwin Davids-MacBook-Pro-2.local 13.4.0 Darwin Kernel Version 13.4.0: >> Wed Dec 17 19:05:52 PST 2014; root:xnu-2422.115.10~1/RELEASE_X86_64 x86_64 >> **************************************************** >> C compiler: gcc >> C compiler version: >> Using built-in specs. >> COLLECT_GCC=gcc >> >> COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/4.8.2_1/libexec/gcc/x86_64-apple-darwin13.2.0/4.8.2/lto-wrapper >> Target: x86_64-apple-darwin13.2.0 >> Configured with: ../configure --build=x86_64-apple-darwin13.2.0 >> --prefix=/usr/local/Cellar/gcc/4.8.2_1 >> --enable-languages=c,c++,objc,obj-c++,fortran --with-gmp=/usr/local/opt/gmp >> --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc >> --with-cloog=/usr/local/opt/cloog --with-isl=/usr/local/opt/isl >> --with-system-zlib --enable-version-specific-runtime-libs >> --enable-libstdcxx-time=yes --enable-stage1-checking >> --enable-checking=release --enable-lto --disable-werror --enable-plugin >> --disable-nls --enable-multilib >> --with-native-system-header-dir=/usr/include >> --with-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk >> Thread model: posix >> gcc version 4.8.2 (GCC) >> **************************************************** >> >> real 0m0.010s >> user 0m0.006s >> sys 0m0.006s >> Successfully installed sqlite-3.8.4.3 >> Deleting temporary build directory >> >> /Users/davideinstein/projects/sage-git/local/var/tmp/sage/build/sqlite-3.8.4.3 >> Finished installing sqlite-3.8.4.3.spkg >> >> On Tuesday, March 31, 2015 at 2:08:42 PM UTC-4, Volker Braun wrote: >>> >>> Whats in your sqlite and python compile log (in $SAGE_ROOT/logs/pkgs)? >>> >>> Do you have another conflicting sqlite install in /usr/local, e.g. >>> homebrew and friends? >>> >>> >>> >>> On Tuesday, March 31, 2015 at 7:51:58 PM UTC+2, David Einstein wrote: >>>> >>>> When attempting to compile sage from source on my laptop it dies >>>> attempting to compile conway polynomials >>>> I've attached the log file. >>>> This appears connected to ticket #15433, but AFAICT that code has been >>>> merged into master. >>>> >>>> >>>> Found local metadata for conway_polynomials-0.4.p0 >>>> Attempting to download package conway_polynomials-0.4.p0 >>>> >>> Trying to download >>>> http://www.sagemath.org/packages/upstream/conway_polynomials/conway_polynomials-0.4.tar.bz2 >>>> [...........................] >>>> Checksum: 25b7abe5c935d20c3ebcde943308652c412d14dc vs >>>> 25b7abe5c935d20c3ebcde943308652c412d14dc >>>> conway_polynomials-0.4.p0 >>>> ==================================================== >>>> Setting up build directory for conway_polynomials-0.4.p0 >>>> Finished set up >>>> **************************************************** >>>> Host system: >>>> Darwin Davids-MacBook-Pro-2.local 13.4.0 Darwin Kernel Version 13.4.0: >>>> Wed Dec 17 19:05:52 PST 2014; root:xnu-2422.115.10~1/RELEASE_X86_64 x86_64 >>>> **************************************************** >>>> C compiler: gcc >>>> C compiler version: >>>> Using built-in specs. >>>> COLLECT_GCC=gcc >>>> >>>> COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/4.8.2_1/libexec/gcc/x86_64-apple-darwin13.2.0/4.8.2/lto-wrapper >>>> Target: x86_64-apple-darwin13.2.0 >>>> Configured with: ../configure --build=x86_64-apple-darwin13.2.0 >>>> --prefix=/usr/local/Cellar/gcc/4.8.2_1 >>>> --enable-languages=c,c++,objc,obj-c++,fortran >>>> --with-gmp=/usr/local/opt/gmp >>>> --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc >>>> --with-cloog=/usr/local/opt/cloog --with-isl=/usr/local/opt/isl >>>> --with-system-zlib --enable-version-specific-runtime-libs >>>> --enable-libstdcxx-time=yes --enable-stage1-checking >>>> --enable-checking=release --enable-lto --disable-werror --enable-plugin >>>> --disable-nls --enable-multilib >>>> --with-native-system-header-dir=/usr/include >>>> --with-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk >>>> Thread model: posix >>>> gcc version 4.8.2 (GCC) >>>> **************************************************** >>>> Traceback (most recent call last): >>>> File "./spkg-install", line 4, in <module> >>>> from sage.all import save >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python2.7/site-packages/sage/all.py", >>>> >>>> line 110, in <module> >>>> from sage.modular.all import * >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python2.7/site-packages/sage/modular/all.py", >>>> >>>> line 9, in <module> >>>> from abvar.all import * >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python2.7/site-packages/sage/modular/abvar/__init__.py", >>>> >>>> line 1, in <module> >>>> import all >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python2.7/site-packages/sage/modular/abvar/all.py", >>>> >>>> line 7, in <module> >>>> from constructor import J0, J1, JH, AbelianVariety >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python2.7/site-packages/sage/modular/abvar/constructor.py", >>>> >>>> line 21, in <module> >>>> from abvar_newform import ModularAbelianVariety_newform >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python2.7/site-packages/sage/modular/abvar/abvar_newform.py", >>>> >>>> line 18, in <module> >>>> from sage.databases.cremona import cremona_letter_code >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python2.7/site-packages/sage/databases/cremona.py", >>>> >>>> line 54, in <module> >>>> from sql_db import SQLDatabase, verify_column >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python2.7/site-packages/sage/databases/sql_db.py", >>>> >>>> line 80, in <module> >>>> import sqlite3 as sqlite >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python/sqlite3/__init__.py", >>>> >>>> line 24, in <module> >>>> from dbapi2 import * >>>> File >>>> "/Users/davideinstein/projects/sage-git/local/lib/python/sqlite3/dbapi2.py", >>>> >>>> line 28, in <module> >>>> from _sqlite3 import * >>>> ImportError: No module named _sqlite3 >>>> >>>> real 0m14.950s >>>> user 0m1.160s >>>> sys 0m0.874s >>>> ************************************************************************ >>>> Error installing package conway_polynomials-0.4.p0 >>>> ************************************************************************ >>>> Please email sage-devel (http://groups.google.com/group/sage-devel) >>>> explaining the problem and including the relevant part of the log file >>>> >>>> /Users/davideinstein/projects/sage-git/logs/pkgs/conway_polynomials-0.4.p0.log >>>> Describe your computer, operating system, etc. >>>> If you want to try to fix the problem yourself, *don't* just cd to >>>> /Users/davideinstein/projects/sage-git/local/var/tmp/sage/build/conway_polynomials-0.4.p0 >>>> >>>> and type 'make' or whatever is appropriate. >>>> Instead, the following commands setup all environment variables >>>> correctly and load a subshell for you to debug the error: >>>> (cd >>>> '/Users/davideinstein/projects/sage-git/local/var/tmp/sage/build/conway_polynomials-0.4.p0' >>>> >>>> && '/Users/davideinstein/projects/sage-git/sage' --sh) >>>> When you are done debugging, you can type "exit" to leave the subshell. >>>> ************************************************************************ >>>> >>>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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