On Sat, Nov 15, 2014 at 9:49 AM, William Stein <wst...@gmail.com> wrote: > Installing the brian optional package via "sage -i brian" seems broken > in Sage-6.4:
I think the solution should be to remove brian as a Sage optional package, since one can just as well do sage: !pip install brian and that seems to actually work. Is there a reason we need to have our own version? > > sage: !sage -i brian > Found package brian in /usr/local/sage/sage-6.4/upstream/brian-1.4.1.p0.spkg > brian-1.4.1.p0 > ==================================================== > Extracting package /usr/local/sage/sage-6.4/upstream/brian-1.4.1.p0.spkg > -rw-r--r-- 1 salvus salvus 552889 Nov 15 02:11 > /usr/local/sage/sage-6.4/upstream/brian-1.4.1.p0.spkg > Finished extraction > **************************************************** > Host system: > Linux salvus-base 3.13.0-39-generic #66-Ubuntu SMP Tue Oct 28 13:30:27 > UTC 2014 x86_64 x86_64 x86_64 GNU/Linux > **************************************************** > C compiler: gcc > C compiler version: > Using built-in specs. > COLLECT_GCC=gcc > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper > Target: x86_64-linux-gnu > Configured with: ../src/configure -v --with-pkgversion='Ubuntu > 4.8.2-19ubuntu1' > --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs > --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr > --program-suffix=-4.8 --enable-shared --enable-linker-build-id > --libexecdir=/usr/lib --without-included-gettext > --enable-threads=posix --with-gxx-in > clude-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls > --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug > --enable-libstdcxx-time=yes --enable-gnu-unique-object > --disable-libmudflap --enable-plugin --with-system-zlib > --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd > 64/jre --enable-java-home > --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 > --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 > --with-arch-directory=amd64 > --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc > --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 > --with-multilib-list=m32,m64,mx32 --with-t > une=generic --enable-checking=release --build=x86_64-linux-gnu > --host=x86_64-linux-gnu --target=x86_64-linux-gnu > Thread model: posix > gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) > **************************************************** > (Stripping trailing CRs from patch; use --binary to disable.) > patching file brian/units.py > Hunk #1 FAILED at 11173 (different line endings). > 1 out of 1 hunk FAILED -- saving rejects to file brian/units.py.rej > Error applying '../patches/units.py.patch'. > > real 0m0.018s > user 0m0.000s > sys 0m0.014s > ************************************************************************ > Error installing package brian-1.4.1.p0 > ************************************************************************ > Please email sage-devel (http://groups.google.com/group/sage-devel) > explaining the problem and including the relevant part of the log file > /usr/local/sage/sage-6.4/logs/pkgs/brian-1.4.1.p0.log > Describe your computer, operating system, etc. > If you want to try to fix the problem yourself, *don't* just cd to > /usr/local/sage/sage-6.4/local/var/tmp/sage/build/brian-1.4.1.p0 and > type 'make' or whatever is appropriate. > Instead, the following commands setup all environment variables > correctly and load a subshell for you to debug the error: > (cd '/usr/local/sage/sage-6.4/local/var/tmp/sage/build/brian-1.4.1.p0' > && '/usr/local/sage/sage-6.4/sage' --sh) > When you are done debugging, you can type "exit" to leave the subshell. > ************************************************************************ > > -- > William Stein > Professor of Mathematics > University of Washington > http://wstein.org -- William Stein Professor of Mathematics University of Washington http://wstein.org -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/d/optout.
