Ok, I got over the above hurdle. Some permissions were set wrong and now
sage-6.4.beta4 installs fine. However, now I have the next problem:
sage-5.13 will not build (I need this old version though since not the
entire sage-combinat queue was merged into the git setting yet). Any ideas
how to fix this build failure on OSX 10.9.4
...
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c MinorProcessor.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c MinorInterface.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c bigintm.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c pyobject_setup.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c denom_list.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c minpoly.cc
gcc -O2 -g -fPIC -DLIBSINGULAR -pipe -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c semaphore.c
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c slInit_Static.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c mpsr_Put.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c mpsr_PutPoly.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c mpsr_GetPoly.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c mpsr_sl.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c mpsr_Get.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c mpsr_GetMisc.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c mpsr_Error.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c ndbm.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c sing_dbm.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-I. -I.. -I/Applications/sage-5.13/local
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H gentable2.cc \
-o gentable2
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-I. -I.. -I/Applications/sage-5.13/local
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c claptmpl.cc
In file included from gentable2.cc:87:0:
table.h:291:1: warning: converting to non-pointer type 'int' from NULL
[-Wconversion-null]
table.h:678:1: warning: converting to non-pointer type 'int' from NULL
[-Wconversion-null]
table.h:781:1: warning: converting to non-pointer type 'int' from NULL
[-Wconversion-null]
table.h:842:1: warning: converting to non-pointer type 'int' from NULL
[-Wconversion-null]
./mkinstalldirs /Applications/sage-5.13/local/share/singular
for file in `pwd`/LIB/*.lib; do \
/usr/bin/install -c -m 644 $file
/Applications/sage-5.13/local/share/singular; \
done
./gentable2
/bin/rm -f gentable2 gentable2.exe
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c extra.cc
extra.cc: In function 'BOOLEAN jjSYSTEM(leftv, leftv)':
extra.cc:752:30: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:917:59: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:924:59: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:940:30: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:1216:71: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:1218:45: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc: In function 'BOOLEAN jjEXTENDED_SYSTEM(leftv, leftv)':
extra.cc:3124:42: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:3146:48: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:3148:47: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:3354:47: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:3566:29: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
extra.cc:3637:87: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
./mkinstalldirs /Applications/sage-5.13/local/share/singular/gftables
for file in `pwd`/LIB/gftables/*; do \
/usr/bin/install -c -m 644 $file
/Applications/sage-5.13/local/share/singular/gftables/; \
done
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c fehelp.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c feOpt.cc
feOpt.cc: In function 'const char* feSetOptValue(feOptIndex, int)':
feOpt.cc:351:36: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c iparith.cc
g++ -O2 -g -fPIC -DLIBSINGULAR -I.. -I/Applications/sage-5.13/local -pipe
-fno-implicit-templates -I.. -I/Applications/sage-5.13/local -I. -I..
-I/Applications/sage-5.13/local -I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include
-I/Applications/sage-5.13/local/include -I/usr/local/include -DNDEBUG
-DOM_NDEBUG -Dx86_64Mac_darwin -DHAVE_CONFIG_H -c mpsr_Tok.cc
iparith.cc: In function 'BOOLEAN jjUNIVARIATE(leftv, leftv)':
iparith.cc:4981:21: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
iparith.cc: In function 'BOOLEAN jjLU_INVERSE(leftv, leftv)':
iparith.cc:6900:53: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
iparith.cc:6906:53: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
iparith.cc: In function 'BOOLEAN jjLU_SOLVE(leftv, leftv)':
iparith.cc:6984:53: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
iparith.cc:6991:53: warning: cast to pointer from integer of different size
[-Wint-to-pointer-cast]
libtool -dynamic -twolevel_namespace -weak_reference_mismatches weak
-undefined dynamic_lookup -single_module -o libsingular.dylib \
iparith.o mpsr_Tok.o claptmpl.o \
grammar.o scanner.o attrib.o blackbox.o eigenval_ip.o extra.o fehelp.o
feOpt.o ipassign.o ipconv.o ipid.o iplib.o ipprint.o ipshell.o newstruct.o
lists.o sdb.o fglm.o interpolation.o silink.o ssiLink.o s_buff.o subexpr.o
janet.o wrapper.o libparse.o sing_win.o gms.o pcv.o maps_ip.o walk.o
walk_ip.o cntrlc.o misc_ip.o calcSVD.o pipeLink.o Minor.o MinorProcessor.o
MinorInterface.o bigintm.o pyobject_setup.o denom_list.o minpoly.o
semaphore.o slInit_Static.o mpsr_Put.o mpsr_PutPoly.o mpsr_GetPoly.o
mpsr_sl.o mpsr_Get.o mpsr_GetMisc.o mpsr_Error.o ndbm.o sing_dbm.o -lkernel
-L../kernel -L../factory -L../libfac -L/Applications/sage-5.13/local/lib
-lsingfac -lsingcf -lntl -lreadline -lgmp -lomalloc
ld: symbol dyld_stub_binding_helper not found, normally in
crt1.o/dylib1.o/bundle1.o for architecture x86_64
fatal error:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/libtool:
internal link edit command failed
make[4]: *** [libsingular] Error 1
make[3]: *** [install-libsingular] Error 1
Unable to build and install libsingular.
Error building Singular (error in build_libsingular).
real 3m32.244s
user 7m42.428s
sys 0m35.896s
************************************************************************
Error installing package singular-3-1-5.p9
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/Applications/sage-5.13/logs/pkgs/singular-3-1-5.p9.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/Applications/sage-5.13/spkg/build/singular-3-1-5.p9 and type 'make' or
whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/Applications/sage-5.13/spkg/build/singular-3-1-5.p9' &&
'/Applications/sage-5.13/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
make[2]: *** [/Applications/sage-5.13/spkg/installed/singular-3-1-5.p9]
Error 1
make[1]: *** [all] Error 2
real 3m33.611s
user 7m43.621s
sys 0m36.313s
***************************************************************
Error building Sage.
The following package(s) may have failed to build:
package: singular-3-1-5.p9
log file: /Applications/sage-5.13/logs/pkgs/singular-3-1-5.p9.log
build directory: /Applications/sage-5.13/spkg/build/singular-3-1-5.p9
The build directory may contain configuration files and other potentially
helpful information. WARNING: if you now run 'make' again, the build
directory will, by default, be deleted. Set the environment variable
SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
make: *** [build] Error 1
Thanks,
Anne
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