The function sage.symbolic.assumptions.assume (and related functions) have
documentation in their docstrings; however, the corresponding file
src/sage/symbolic/assumptions.py is not contained in any .rst file for the
reference manual. Therefore, the documentation of the function assume() does not
show up in the reference manual. On the other hand, the method
sage.symbolic.expression.Expression.assume is documented in the reference 
manual.

Note that src/sage/symbolic/assumptions.py would need some work in order to
include it; at least, a ReSt title should be inserted.

Is there a reason for this omission?

(I'd like to be able to refer to assume as
:func:`sage.symbolic.assumptions.assume` in some other piece of documentation 
...)

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