I now have a working version sage! I should qualify this: I have a working 
version of 6.2.rc0 but I am still unable to compile 6.1.1. I think that 
this is because of #15937 <http://trac.sagemath.org/ticket/15937>. This 
patch is included in 6.2.rc0 and it fixes issues between singular and the 
version of xcode that preceded the one that I am using. 

Please correct me if I am wrong, but I don't think that 6.1.1 compiles with 
the latest version of xcode and the command line tools (5.1.1 build 5B1008).

As I'd previously compiled 6.1.1 I assumed that my problems were caused by 
6.2.rc0. Then I got stuck, however, because I couldn't recompile 6.1.1. In 
the comments above there is some confusion about which version of singular 
sage should have been using and that there may have been git issues. In 
fact, git was happy and sage was always using the appropriate version of 
singular for the version of sage being compiled. Once I realised this and 
found #15937 I gave up trying to compile 6.1.1 and found that I was able to 
compile 6.2.rc0.

I have to say that I am a little confused about the build process. With 
most systems, 
make distclean
will attempt to return the code to its pristine download state. It seems 
that sage is doing something different? If this is the case, then I think 
it would be good to rename this make flag to something more accurate like 
rebuild/reset/...?

Anyway, sage is now working again so I am very happy. Thank you everyone 
for your help, especially Volker.

Andrew

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