Hi all, Thanks for all the help. I'm in touch with RC help and I'm not doing anything they disapprove of. :) In case you're curious: the policy on this cluster is that yes, you build your own software, and they provide compile nodes for that (separate from login nodes), but you are also allowed to submit for an interactive job and do it on a compute node if for some reason that's better (e.g. compile nodes congested, big compile). You are encouraged to build software in a public projects directory so others an use it one you've built it (which I'm doing).
It seems to be a simple case of the perl module not being installed and they are in the process of installing and testing it for me. The support here is fantastic. We'll soon have Sage up and running. Did anyone want to know timings on the test suite or anything like that? Best, Kate On Monday, February 10, 2014 11:19:15 PM UTC-7, William wrote: > On Mon, Feb 10, 2014 at 7:59 PM, Brad Burkman wrote: > > > Kate, > > > > > > Are you allowed to build software on your own on JANUS? That seems like > > > something the admins would rather do themselves. I suspect that there's > > > something in the operating system that shuts down such attempts without > > > administrative status. > > > > > > Brad > > > > 1. She specifically wrote "... on one of the JANUS compile nodes > > (6.1.1, downloaded yesterday)..." > > > > 2. In my experience with TACC (Texas supercomputers -- > > https://www.tacc.utexas.edu/) they provide several login nodes for > > building software (which then lives on a shared filesystem), and a job > > submission system for actually doing production runs. That said, > > I've been shutdown when doing "make ptest", since that *looks* like > > doing a computation. Sage's compile process is a lot more > > compute-looking than for most software. > > > > -- William > > > > > > > > > > > On Sunday, February 9, 2014 10:55:38 PM UTC-6, Kate Stange wrote: > > >> > > >> > > >> > > >> Hi all, > > >> > > >> I just recently received my allocation on the University of Boulder's > > >> Research Computing cluster, with the supercomputer JANUS: > > >> > > >> https://www.rc.colorado.edu/ > > >> > > >> And so I logged in and compiled sage from source on one of the JANUS > > >> compile nodes (6.1.1, downloaded yesterday). > > >> > > >> I ran make on one node with 12 threads, but after about 20 minutes it > > >> failed on git. I'd love to have Sage working on there, so I'm hoping > > >> someone out there might be able to make a suggestion. I can contact RC > >> help > > >> about this, but I thought it might help to have a few responses here about > > >> what to ask them specifically. > > >> > > >> Here's the relevant bit of git's log: > > >> > > >> make[4]: Entering directory > > >> `/projects/kast5807/sage-6.1.1/local/var/tmp/sage/build/git-1.8.4.4/src/perl' > > >> /usr/bin/perl Makefile.PL PREFIX='/projects/kast5807/sage-6.1.1/local' > > >> INSTALL_BASE='' > > >> --localedir='/projects/kast5807/sage-6.1.1/local/share/locale' > > >> Can't locate ExtUtils/MakeMaker.pm in @INC (@INC contains: > > >> /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl > > >> /usr/share/perl5/ > > >> vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at Makefile.PL line 3. > > >> BEGIN failed--compilation aborted at Makefile.PL line 3. > > >> make[4]: *** [perl.mak] Error 2 > > >> make[4]: Leaving directory > > >> `/projects/kast5807/sage-6.1.1/local/var/tmp/sage/build/git-1.8.4.4/src/perl' > > >> make[3]: *** [perl/perl.mak] Error 2 > > >> make[3]: *** Waiting for unfinished jobs.... > > >> make[3]: Leaving directory > > >> `/projects/kast5807/sage-6.1.1/local/var/tmp/sage/build/git-1.8.4.4/src' > > >> Error building git. > > >> > > >> Thanks! > > >> > > >> Katherine Stange > > >> Department of Mathematics ~ University of Colorado, Boulder > > >> ( Campus Box 395, Boulder, Colorado 80309 ~ kst...@math.colorado.edu ) > > >> > > >> math: http://math.katestange.net/ > > >> photos: http://pixel.katestange.net/ > > >> > > >> > > > -- > > > You received this message because you are subscribed to the Google Groups > > > "sage-devel" group. > > > > > > > > > -- > > William Stein > > Professor of Mathematics > > University of Washington > > http://wstein.org -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
