>From what I remember, doctesting a file using 
sage -btnew

used to work from all directories. It doesn't right now because it doesn't 
take the relative path or absolute path into account. The paths are all 
relative to SAGE_ROOT.

...ations/sage/src/sage/plotĀ» sage -btnew
scons: `install' is up to date.
Updating Cython code....
Finished compiling Cython code (time = 2.20727992058 seconds)
running install
running build
running build_py
copying sage/plot/matrix_plot.py -> build/lib.linux-x86_64-2.7/sage/plot
running build_ext
Executing 0 commands (using 1 thread)
Time to execute 0 commands: 0.0022029876709 seconds
Total time spent compiling C/C++ extensions:  0.0984809398651 seconds.
running install_lib
copying build/lib.linux-x86_64-2.7/sage/plot/matrix_plot.py -> 
/home/punarbasu/tmp/sage/local/lib/python2.7/site-packages/sage/plot
byte-compiling 
/home/punarbasu/tmp/sage/local/lib/python2.7/site-packages/sage/plot/matrix_plot.py
 
to matrix_plot.pyc
running install_egg_info
Removing 
/home/punarbasu/tmp/sage/local/lib/python2.7/site-packages/sage-6.1.beta5-py2.7.egg-info
Writing 
/home/punarbasu/tmp/sage/local/lib/python2.7/site-packages/sage-6.1.beta5-py2.7.egg-info
Running doctests with ID 2014-01-19-21-31-24-f65200e9.
Doctesting files changed since last git commit
Doctesting 1 file.
sage -t src/sage/plot/matrix_plot.py
    IOError in doctesting framework
**********************************************************************
Traceback (most recent call last):
  File 
"/home/punarbasu/tmp/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
 
line 2086, in __call__
    doctests, extras = self.source.create_doctests(sage_namespace)
  File 
"/home/punarbasu/tmp/sage/local/lib/python2.7/site-packages/sage/doctest/sources.py",
 
line 627, in create_doctests
    raise IOError(errno.ENOENT, "File does not exist", self.path)
IOError: [Errno 2] File does not exist: 'src/sage/plot/matrix_plot.py'

----------------------------------------------------------------------
sage -t src/sage/plot/matrix_plot.py  # IOError in doctesting framework
----------------------------------------------------------------------
Total time for all tests: 0.0 seconds
    cpu time: 0.0 seconds
    cumulative wall time: 0.0 seconds



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