Did you do a full rebuild ("make distclean") after you fixed your initial
problems?
On Thursday, December 19, 2013 6:08:22 AM UTC, Charles Greathouse wrote:
>
> I was trying to build Sage for the first time and I ran into some errors.
> The first few I could fix (mismatched gcc/g++/gfortran versions) but after
> the initial errors were fixed the installer seemed to be chugging along
> just fine. About 3-4 hours in the process failed, though, on
> conway_polynomials. I've appended the log file below; I'm not sure what
> more to say since this has my system details.
>
> Found package conway_polynomials-0.4.p0 in
> spkg/standard/conway_polynomials-0.4.p0.spkg
> conway_polynomials-0.4.p0
> ====================================================
> Extracting package
> /home/charles/mth/sage-5.13/spkg/standard/conway_polynomials-0.4.p0.spkg
> -rw-r--r-- 1 charles charles 227128 Mar 15 2013
> /home/charles/mth/sage-5.13/spkg/standard/conway_polynomials-0.4.p0.spkg
> Finished extraction
> ****************************************************
> Host system:
> Linux zed 3.2.0-56-generic #86-Ubuntu SMP Wed Oct 23 09:20:45 UTC 2013
> x86_64 x86_64 x86_64 GNU/Linux
> ****************************************************
> C compiler: gcc
> C compiler version:
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
> Target: x86_64-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu
> 4.8.1-2ubuntu1~12.04'
> --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs
> --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr
> --program-suffix=-4.8 --enable-shared --enable-linker-build-id
> --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
> --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls
> --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug
> --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin
> --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk
> --enable-gtk-cairo
> --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre
> --enable-java-home
> --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64
> --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64
> --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
> --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686
> --with-abi=m64 --with-multilib-list=m32,m64 --with-tune=generic
> --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
> --target=x86_64-linux-gnu
> Thread model: posix
> gcc version 4.8.1 (Ubuntu 4.8.1-2ubuntu1~12.04)
> ****************************************************
> Setting permissions of DOT_SAGE directory so only you can read and write
> it.
> Traceback (most recent call last):
> File "./spkg-install", line 4, in <module>
> from sage.all import save
> File
> "/home/charles/mth/sage-5.13/local/lib/python2.7/site-packages/sage/all.py",
> line 71, in <module>
> from sage.misc.all import * # takes a while
> File
> "/home/charles/mth/sage-5.13/local/lib/python2.7/site-packages/sage/misc/all.py",
>
> line 95, in <module>
> from functional import (additive_order,
> File
> "/home/charles/mth/sage-5.13/local/lib/python2.7/site-packages/sage/misc/functional.py",
>
> line 36, in <module>
> from sage.rings.complex_double import CDF
> ImportError: /home/charles/mth/sage-5.13/local/lib/libgsl.so.0: undefined
> symbol: cblas_sdsdot
>
> real 0m1.669s
> user 0m0.656s
> sys 0m0.136s
> ************************************************************************
> Error installing package conway_polynomials-0.4.p0
> ************************************************************************
> Please email sage-devel (http://groups.google.com/group/sage-devel)
> explaining the problem and including the relevant part of the log file
> /home/charles/mth/sage-5.13/logs/pkgs/conway_polynomials-0.4.p0.log
> Describe your computer, operating system, etc.
> If you want to try to fix the problem yourself, *don't* just cd to
> /home/charles/mth/sage-5.13/spkg/build/conway_polynomials-0.4.p0 and type
> 'make' or whatever is appropriate.
> Instead, the following commands setup all environment variables
> correctly and load a subshell for you to debug the error:
> (cd '/home/charles/mth/sage-5.13/spkg/build/conway_polynomials-0.4.p0'
> && '/home/charles/mth/sage-5.13/sage' --sh)
> When you are done debugging, you can type "exit" to leave the subshell.
> ************************************************************************
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