This is building with the FreeBSD port, using SAGE_ATLAS_LIB=/usr/local/lib.
I really don't know what to look for, or which errors are fatal and
which are just warnings.
See attachment.
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Found package scipy-0.12.0.p0 in spkg/standard/scipy-0.12.0.p0.spkg
scipy-0.12.0.p0
====================================================
Extracting package /usr/home/stephen/sage-devel/work/sage-5.10.beta5/spkg/standard/scipy-0.12.0.p0.spkg
-rw-r--r-- 1 stephen staff 7584587 May 26 19:55 /usr/home/stephen/sage-devel/work/sage-5.10.beta5/spkg/standard/scipy-0.12.0.p0.spkg
Finished extraction
****************************************************
Host system:
FreeBSD wilberforce 8.4-PRERELEASE FreeBSD 8.4-PRERELEASE #0: Tue Apr 2 16:51:28 CDT 2013 stephen@wilberforce:/usr/obj/usr/src/sys/GENERIC amd64
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=/usr/local/bin/gcc47
COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc47/gcc/x86_64-portbld-freebsd8.4/4.7.4/lto-wrapper
Target: x86_64-portbld-freebsd8.4
Configured with: ./../gcc-4.7-20130413/configure --disable-nls --libdir=/usr/local/lib/gcc47 --libexecdir=/usr/local/libexec/gcc47 --program-suffix=47 --with-as=/usr/local/bin/as --with-gmp=/usr/local --with-gxx-include-dir=/usr/local/lib/gcc47/include/c++/ --with-ld=/usr/local/bin/ld --with-libiconv-prefix=/usr/local --with-pkgversion='FreeBSD Ports Collection' --with-system-zlib --with-ecj-jar=/usr/local/share/java/ecj-4.5.jar --enable-languages=c,c++,objc,fortran,java --prefix=/usr/local --mandir=/usr/local/man --infodir=/usr/local/info/gcc47 --build=x86_64-portbld-freebsd8.4
Thread model: posix
gcc version 4.7.4 20130413 (prerelease) (FreeBSD Ports Collection)
****************************************************
Note: CFLAGS, CXXFLAGS and SHAREDFLAGS are taken from distutils,
so their current settings are ignored.
Running from scipy source directory.
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in ['/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas_r not found in ['/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local', '/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/include', '/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib']
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas_r not found in ['/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local', '/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/include', '/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib']
NOT AVAILABLE
/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1494: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
libraries blas not found in ['/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local', '/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/include', '/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib']
NOT AVAILABLE
/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1503: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
NOT AVAILABLE
/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1506: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
File "setup.py", line 165, in <module>
setup_package()
File "setup.py", line 161, in setup_package
configuration=configuration)
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/core.py", line 152, in setup
config = configuration()
File "setup.py", line 136, in configuration
config.add_subpackage('scipy')
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage
caller_level = 2)
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage
caller_level = caller_level + 1)
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 9, in configuration
config.add_subpackage('integrate')
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage
caller_level = 2)
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage
caller_level = caller_level + 1)
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/integrate/setup.py", line 11, in configuration
blas_opt = get_info('blas_opt',notfound_action=2)
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 338, in get_info
return cl().get_info(notfound_action)
File "/usr/home/stephen/sage-devel/work/sage-5.10.beta5/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 497, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
Error building scipy.
real 0m1.015s
user 0m0.218s
sys 0m0.117s
************************************************************************
Error installing package scipy-0.12.0.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/usr/home/stephen/sage-devel/work/sage-5.10.beta5/logs/pkgs/scipy-0.12.0.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/usr/home/stephen/sage-devel/work/sage-5.10.beta5/spkg/build/scipy-0.12.0.p0 and type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/usr/home/stephen/sage-devel/work/sage-5.10.beta5/spkg/build/scipy-0.12.0.p0' && '/usr/home/stephen/sage-devel/work/sage-5.10.beta5/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
