For http://trac.sagemath.org/sage_trac/ticket/14505, I needed to 
libtoolize a rather old source (unchnaged for last 6 years), to get
rid of a bunch of messy Makefiles etc.
Apart from that, the change was in the layout of include/.
I imported the upstream svn repo into git, and put it up on github.
While it's perfectly possible to make a cumulative diff against the
upstream source, and use it to create the spkg, I rather prefer
to use the modified source on the git repo.

Another concern is the history of spkg-specific files; 
following libGAP's example I only provide a fake hg repo in the spkg,
with the real history of changes documented on github.

Any thoughts about this?

Thanks,
Dima


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