While compiling the latest source from the web, I got this message:
Error installing package scipy-0.9.p1
I'm using a MacBook Pro with OS 10.8.2, 2.9 GHz Intel Core i7. I have never
installed something from the source code before, so I am a little lost at this
point. I have been following the directions on sagemath.org. Any help would be
appreciated! I have included about the last hundred lines of the build below.
Also, I have not downloaded SciPy or NumPy before on this computer, if that
makes a difference.
gcc: scipy/sparse/linalg/dsolve/SuperLU/SRC/zreadtriple.c
In file included from scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_zdefs.h:84:0,
from scipy/sparse/linalg/dsolve/SuperLU/SRC/zreadtriple.c:12:
scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_util.h:349:1: warning: function
declaration isn’t a prototype [-Wstrict-prototypes]
scipy/sparse/linalg/dsolve/SuperLU/SRC/zreadtriple.c: In function ‘zreadrhs’:
scipy/sparse/linalg/dsolve/SuperLU/SRC/zreadtriple.c:127:5: warning: function
declaration isn’t a prototype [-Wstrict-prototypes]
gcc: scipy/sparse/linalg/dsolve/SuperLU/SRC/zutil.c
In file included from scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_zdefs.h:84:0,
from scipy/sparse/linalg/dsolve/SuperLU/SRC/zutil.c:26:
scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_util.h:349:1: warning: function
declaration isn’t a prototype [-Wstrict-prototypes]
scipy/sparse/linalg/dsolve/SuperLU/SRC/zutil.c: In function ‘zFillRHS’:
scipy/sparse/linalg/dsolve/SuperLU/SRC/zutil.c:360:22: warning: variable ‘Aval’
set but not used [-Wunused-but-set-variable]
scipy/sparse/linalg/dsolve/SuperLU/SRC/zutil.c: At top level:
scipy/sparse/linalg/dsolve/SuperLU/SRC/zutil.c:468:1: warning: return type
defaults to ‘int’ [-Wreturn-type]
gcc: scipy/sparse/linalg/dsolve/SuperLU/SRC/ccolumn_dfs.c
In file included from scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_cdefs.h:84:0,
from scipy/sparse/linalg/dsolve/SuperLU/SRC/ccolumn_dfs.c:24:
scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_util.h:349:1: warning: function
declaration isn’t a prototype [-Wstrict-prototypes]
scipy/sparse/linalg/dsolve/SuperLU/SRC/ccolumn_dfs.c: In function ‘ccolumn_dfs’:
scipy/sparse/linalg/dsolve/SuperLU/SRC/ccolumn_dfs.c:133:3: warning: suggest
parentheses around assignment used as truth value [-Wparentheses]
scipy/sparse/linalg/dsolve/SuperLU/SRC/ccolumn_dfs.c:176:7: warning: suggest
parentheses around assignment used as truth value [-Wparentheses]
gcc: scipy/sparse/linalg/dsolve/SuperLU/SRC/dpruneL.c
In file included from scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_ddefs.h:84:0,
from scipy/sparse/linalg/dsolve/SuperLU/SRC/dpruneL.c:25:
scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_util.h:349:1: warning: function
declaration isn’t a prototype [-Wstrict-prototypes]
gcc: scipy/sparse/linalg/dsolve/SuperLU/SRC/dzsum1.c
gcc: scipy/sparse/linalg/dsolve/SuperLU/SRC/cmemory.c
In file included from scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_cdefs.h:84:0,
from scipy/sparse/linalg/dsolve/SuperLU/SRC/cmemory.c:11:
scipy/sparse/linalg/dsolve/SuperLU/SRC/slu_util.h:349:1: warning: function
declaration isn’t a prototype [-Wstrict-prototypes]
ar: adding 50 object files to build/temp.macosx-10.8-x86_64-2.7/libsuperlu_src.a
ar: adding 50 object files to build/temp.macosx-10.8-x86_64-2.7/libsuperlu_src.a
ar: adding 50 object files to build/temp.macosx-10.8-x86_64-2.7/libsuperlu_src.a
ar: adding 25 object files to build/temp.macosx-10.8-x86_64-2.7/libsuperlu_src.a
ranlib:@ build/temp.macosx-10.8-x86_64-2.7/libsuperlu_src.a
building 'arpack' library
compiling C sources
C compiler: gcc -fno-strict-aliasing -fwrapv -DNDEBUG -g -O3 -Wall
-Wstrict-prototypes
creating build/temp.macosx-10.8-x86_64-2.7/scipy/sparse/linalg/eigen
creating build/temp.macosx-10.8-x86_64-2.7/scipy/sparse/linalg/eigen/arpack
creating
build/temp.macosx-10.8-x86_64-2.7/scipy/sparse/linalg/eigen/arpack/ARPACK
creating
build/temp.macosx-10.8-x86_64-2.7/scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS
compile options: '-Iscipy/sparse/linalg/eigen/arpack/ARPACK/SRC
-I/Users/dbelongia/sage/sage-5.3/local/lib/python2.7/site-packages/numpy/core/include
-c'
gcc: scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS/veclib_cabi_c.c
In file included from
scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS/veclib_cabi_c.c:2:0:
/System/Library/Frameworks/vecLib.framework/Headers/vecLib.h:22:4: error:
#error "<vecLib/vecLib.h> is deprecated. Please #include
<Accelerate/Accelerate.h> and link to Accelerate.framework."
In file included from
scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS/veclib_cabi_c.c:2:0:
/System/Library/Frameworks/vecLib.framework/Headers/vecLib.h:22:4: error:
#error "<vecLib/vecLib.h> is deprecated. Please #include
<Accelerate/Accelerate.h> and link to Accelerate.framework."
error: Command "gcc -fno-strict-aliasing -fwrapv -DNDEBUG -g -O3 -Wall
-Wstrict-prototypes -Iscipy/sparse/linalg/eigen/arpack/ARPACK/SRC
-I/Users/dbelongia/sage/sage-5.3/local/lib/python2.7/site-packages/numpy/core/include
-c scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS/veclib_cabi_c.c -o
build/temp.macosx-10.8-x86_64-2.7/scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS/veclib_cabi_c.o"
failed with exit status 1
Error building scipy.
real 1m33.184s
user 1m22.749s
sys 0m7.432s
************************************************************************
Error installing package scipy-0.9.p1
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/Users/dbelongia/sage/sage-5.3/spkg/logs/scipy-0.9.p1.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/Users/dbelongia/sage/sage-5.3/spkg/build/scipy-0.9.p1 and type 'make' or
whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/Users/dbelongia/sage/sage-5.3/spkg/build/scipy-0.9.p1' &&
'/Users/dbelongia/sage/sage-5.3/sage' -sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
make[1]: *** [installed/scipy-0.9.p1] Error 1
Let me know if I should include anything else in this description of the
problem!
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