Hi, Just tried to compile 5.2 on a RHEL 5.8 system on the latest HP ProLiant ml110 G7 system and the compile breaks while trying to configure and compile atlas.
I have downloaded the latest version of atlas3.10.0.tar.bz2 and that compiles out of the box on its own. The original version of atlas3.8.4.tar.bz2 equally does not compile. some output: **************************************************** Host system: Linux ml110g7 2.6.18-308.11.1.el5 #1 SMP Fri Jun 15 15:41:53 EDT 2012 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/home/jr/software/sage/sage-5.1/local/libexec/gcc/ x86_64-unknown-linux-gnu/4.6.3/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../src/configure --prefix=/home/jr/software/sage/ sage-5.1/local --with-local-prefix=/home/jr/software/sage/sage-5.1/ local --with-gmp=/home/jr/software/sage/sage-5.1/local --with-mpfr=/ home/jr/software/sage/sage-5.1/local --with-mpc=/home/jr/software/sage/ sage-5.1/local --with-system-zlib --disable-multilib Thread model: posix gcc version 4.6.3 (GCC) **************************************************** Configuration: SAGE_LOCAL: /home/jr/software/sage/sage-5.1/local linker_Solaris?: False PPC?: False SPKG_DIR: /home/jr/software/sage/sage-5.1/spkg/build/ atlas-3.8.4.p1 linker_GNU?: True ld: GNU system: Linux Darwin?: False machine: x86_64 fortran: gfortran Solaris?: False fortran_g95?: False bits: 64bit CYGWIN?: False SPARC?: False fortran_GNU?: True FreeBSD?: False 32bit?: False IA64?: False Linux?: True 64bit?: True Intel?: True processor: x86_64 Copying patches/Make.top to src Copying patches/archinfo_linux.c to src/CONFIG/src/backend/ archinfo_linux.c Copying patches/archinfo_x86.c to src/CONFIG/src/backend/ archinfo_x86.c Copying patches/probe_comp.c to src/CONFIG/src/probe_comp.c First attempt: automatic tuning. Running configure with arch = None and isa extensions None Running ../src/configure --prefix=/home/jr/software/sage/sage-5.1/ local --with-netlib-lapack=/home/jr/software/sage/sage-5.1/local/lib/ liblapack.a make[2]: Entering directory `/home/jr/software/sage/ sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS-build' gcc -I/home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/include -g -w -c /home/jr/software/sage/sage-5.1/ spkg/build/atlas-3.8.4.p1/ATLAS-build/../src//CONFIG/src/ atlconf_misc.c gcc -I/home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/include -g -w -o xconfig /home/jr/software/sage/ sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS-build/../src//CONFIG/src/ config.c atlconf_misc.o atlconf_misc.o: In function `CmndResults': /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[2]: Leaving directory `/home/jr/software/sage/sage-5.1/spkg/build/ atlas-3.8.4.p1/ATLAS-build' ./xconfig -d s /home/jr/software/sage/sage-5.1/spkg/build/ atlas-3.8.4.p1/ATLAS-build/../src/ -d b /home/jr/software/sage/ sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS-build -Ss flapack /home/jr/ software/sage/sage-5.1/local/lib/liblapack.a -Si cputhrchk 0 -Fa alg - fPIC -C if sage_fortran -C xc gcc -C ic gcc -C dm gcc -C sm gcc -C dk gcc -C sk gcc -b 64 -O 1 atlconf_misc.o: In function `CmndResults': /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' atlconf_misc.o: In function `CmndResults': /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' atlconf_misc.o: In function `CmndResults': /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' atlconf_misc_BE.o: In function `CmndResults': /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' atlconf_misc.o: In function `CmndResults': /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[2]: Entering directory `/home/jr/software/sage/sage-5.1/spkg/ build/atlas-3.8.4.p1/ATLAS-build' gcc -I/home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/include -g -w -c /home/jr/software/sage/sage-5.1/ spkg/build/atlas-3.8.4.p1/ATLAS-build/../src//CONFIG/src/probe_comp.c gcc -I/home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/include -g -w -o xprobe_comp probe_comp.o atlconf_misc.o atlconf_misc.o: In function `CmndResults': /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' rm -f config1.out make -j1 atlas_run atldir=/home/jr/software/sage/sage-5.1/spkg/build/ atlas-3.8.4.p1/ATLAS-build exe=xprobe_comp args="-v 0 -o atlconf.txt - O 1 -A 19 -Si nof77 0 -C ic 'gcc' -Fa ic '-fPIC' -C sm 'gcc' -Fa sm '- fPIC' -C dm 'gcc' -Fa dm '-fPIC' -C sk 'gcc' -Fa sk '-fPIC' -C dk 'gcc' -Fa dk '-fPIC' -C xc 'gcc' -Fa xc '-fPIC' -C if 'sage_fortran' - Fa if '-fPIC' -b 64" \ redir=config1.out make[3]: Entering directory `/home/jr/software/sage/sage-5.1/spkg/ build/atlas-3.8.4.p1/ATLAS-build' cd /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 19 -Si nof77 0 -C ic 'gcc' -Fa ic '-fPIC' -C sm 'gcc' -Fa sm '-fPIC' -C dm 'gcc' -Fa dm '-fPIC' -C sk 'gcc' -Fa sk '-fPIC' -C dk 'gcc' -Fa dk '-fPIC' -C xc 'gcc' -Fa xc '-fPIC' -C if 'sage_fortran' -Fa if '-fPIC' -b 64 > config1.out as: unrecognized option `-msse2avx' make[4]: *** [IRunCComp] Error 1 Unable to find usable compiler for ICC; abortingMake sure compilers are in your path, and specify good compilers to configure (see INSTALL.txt or 'configure --help' for details)make[3]: *** [atlas_run] Error 1 make[3]: Leaving directory `/home/jr/software/sage/sage-5.1/spkg/build/ atlas-3.8.4.p1/ATLAS-build' make[2]: *** [IRun_comp] Error 2 make[2]: Leaving directory `/home/jr/software/sage/sage-5.1/spkg/build/ atlas-3.8.4.p1/ATLAS-build' xconfig: /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ ATLAS-build/../src//CONFIG/src/config.c:125: ProbeComp: Assertion `! system(ln)' failed. Assembly configured as GAS_x8664 (2) Vector ISA Extension configured as SSE3 (2,28) Architecture configured as Corei2 (19) Clock rate configured as 3093Mhz Maximum number of threads configured as 4 Parallel make command configured as '$(MAKE) -j 4' Cannot detect CPU throttling. /bin/sh: line 1: 24754 Aborted ./xconfig -d s /home/jr/ software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS-build/../src/ - d b /home/jr/software/sage/sage-5.1/spkg/build/atlas-3.8.4.p1/ATLAS- build -Ss flapack /home/jr/software/sage/sage-5.1/local/lib/ liblapack.a -Si cputhrchk 0 -Fa alg -fPIC -C if sage_fortran -C xc gcc -C ic gcc -C dm gcc -C sm gcc -C dk gcc -C sk gcc -b 64 -O 1 xconfig exited with 134 --cc="gcc" -Si cputhrchk 0 -Fa alg -fPIC -C if sage_fortran -C xc "gcc" -C ic "gcc" -C dm "gcc" -C sm "gcc" -C dk "gcc" -C sk "gcc" -b 64 -O 1 Traceback (most recent call last): File "./spkg-install", line 442, in <module> rc = build() File "./spkg-install", line 431, in build assert rc==0, 'Configure failed!' AssertionError: Configure failed! real 0m1.421s user 0m0.913s sys 0m0.488s ************************************************************************ Error installing package atlas-3.8.4.p1 ************************************************************************ -- -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org