First timing looks good.

This is the same example as above, which (in unpatched sage) was 25.8
µs per loop for the creation of a new zero matrix and 13 µs per loop
for copying an existing zero matrix.

With calloc instead of malloc, I obtain:

sage: from sage.matrix.matrix_modn_dense import Matrix_modn_dense
sage: MS = MatrixSpace(GF(3),100,100)
sage: M = Matrix_modn_dense(MS, None,True,True)
sage: timeit("M = Matrix_modn_dense(MS, None,True,True)",
number=10000)
10000 loops, best of 3: 9.56 µs per loop

So, it seems to help.

If tests pass, I'll open a ticket and post a patch tomorrow.

Best regards,
Simon

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