Hello,
I am attempting to compile sage. An error occurred when installing
atlas-3.8.1.p3. The relevant portion of the installation log is
below. My system is Debian Lenny on a ppc Mac. I don't understand
the suggestion at the end of the error message. Any suggestions on
how to proceed are much appreciated. -C
ATLAS install complete. Examine
ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
make[3]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
make clean
make[3]: Entering directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
rm -f *.o x* config?.out *core*
make[3]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
make[2]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
make[2]: Entering directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build/lib'
rm -f libatlas.so liblapack.so
make libatlas.so liblapack.so libf77blas.so libcblas.so liblapack.so
make[3]: Entering directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build/lib'
ld -shared -soname libatlas.so -o libatlas.so \
--whole-archive libatlas.a --no-whole-archive -lc -lm
ld -shared -soname liblapack.so -o liblapack.so --whole-archive \
liblapack.a --no-whole-archive
ld -shared -soname libf77blas.so -o libf77blas.so --whole-archive
libf77blas.a \
--no-whole-archive
ld -shared -soname libcblas.so -o libcblas.so --whole-archive
libcblas.a
make[3]: `liblapack.so' is up to date.
make[3]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build/lib'
rm -f libatlas.so libclapack.so
make libatlas.so libclapack.so libcblas.so
make[3]: Entering directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build/lib'
ld -shared -soname libatlas.so -o libatlas.so \
--whole-archive libatlas.a --no-whole-archive -lc -lm
rm -rf clapack libclapack.a
mkdir clapack
cd clapack ; ar x ../liblapack.a
rm -f clapack/*f77wrap*
ar r libclapack.a clapack/ATL_* clapack/clapack_*
ar: creating libclapack.a
rm -rf clapack
ld -shared -soname liblapack.so -o liblapack.so \
--whole-archive libclapack.a
make[3]: `libcblas.so' is up to date.
make[3]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build/lib'
make[2]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build/lib'
make[2]: Entering directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
mkdir -p /home/chris/Desktop/sage-3.2.1/local/include/atlas
chmod 0755 /home/chris/Desktop/sage-3.2.1/local/include/atlas
make -f Make.top install_inc INSTdir=/home/chris/Desktop/sage-3.2.1/
local/include
make[3]: Entering directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/../src/ATLAS//include/cblas.h /home/chris/Desktop/sage-3.2.1/
local/include/.
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/../src/ATLAS//include/clapack.h /home/chris/Desktop/sage-3.2.1/
local/include/.
chmod 0644 /home/chris/Desktop/sage-3.2.1/local/include/cblas.h /home/
chris/Desktop/sage-3.2.1/local/include/clapack.h
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/include/* /home/chris/Desktop/sage-3.2.1/local/include/atlas/.
chmod 0644 /home/chris/Desktop/sage-3.2.1/local/include/atlas/*
make[3]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
make -f Make.top install_lib INSTdir=/home/chris/Desktop/sage-3.2.1/
local/lib
make[3]: Entering directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/libatlas.a /home/chris/Desktop/sage-3.2.1/local/lib/.
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/libcblas.a /home/chris/Desktop/sage-3.2.1/local/lib/.
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/liblapack.a /home/chris/Desktop/sage-3.2.1/local/lib/.
chmod 0644 /home/chris/Desktop/sage-3.2.1/local/lib/libatlas.a /home/
chris/Desktop/sage-3.2.1/local/lib/liblapack.a \
/home/chris/Desktop/sage-3.2.1/local/lib/
libcblas.a
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/libf77blas.a /home/chris/Desktop/sage-3.2.1/local/lib/.
chmod 0644 /home/chris/Desktop/sage-3.2.1/local/lib/libf77blas.a
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/libptcblas.a /home/chris/Desktop/sage-3.2.1/local/lib/.
cp: cannot stat `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build/lib/libptcblas.a': No such file or
directory
make[3]: [install_lib] Error 1 (ignored)
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/libptf77blas.a /home/chris/Desktop/sage-3.2.1/local/lib/.
cp: cannot stat `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build/lib/libptf77blas.a': No such file or
directory
make[3]: [install_lib] Error 1 (ignored)
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/libatlas.so /home/chris/Desktop/sage-3.2.1/local/lib/.
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/libcblas.so /home/chris/Desktop/sage-3.2.1/local/lib/.
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/libf77blas.so /home/chris/Desktop/sage-3.2.1/local/lib/.
cp /home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3/ATLAS-
build/lib/liblapack.so /home/chris/Desktop/sage-3.2.1/local/lib/.
chmod 0644 /home/chris/Desktop/sage-3.2.1/local/lib/libatlas.so /home/
chris/Desktop/sage-3.2.1/local/lib/liblapack.so \
/home/chris/Desktop/sage-3.2.1/local/lib/libcblas.so /home/
chris/Desktop/sage-3.2.1/local/lib/libcblas.so
chmod 0644 /home/chris/Desktop/sage-3.2.1/local/lib/libptcblas.a /home/
chris/Desktop/sage-3.2.1/local/lib/libptf77blas.a
chmod: cannot access `/home/chris/Desktop/sage-3.2.1/local/lib/
libptcblas.a': No such file or directory
chmod: cannot access `/home/chris/Desktop/sage-3.2.1/local/lib/
libptf77blas.a': No such file or directory
make[3]: [install_lib] Error 1 (ignored)
make[3]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
make[2]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg/build/
atlas-3.8.1.p3/ATLAS-build'
ld -L/home/chris/Desktop/sage-3.2.1/local/lib -shared -soname
liblapack.so -o liblapack.so --whole-archive liblapack.a --no-whole-
archive -lc -lm -lgfortran
ld: cannot find -lgfortran
ld -L/home/chris/Desktop/sage-3.2.1/local/lib -shared -soname
libf77blas.so -o libf77blas.so --whole-archive libf77blas.a --no-whole-
archive -lc -lm -lgfortran
ld: cannot find -lgfortran
real 66m22.652s
user 46m15.560s
sys 4m17.108s
sage: An error occurred while installing atlas-3.8.1.p3
Please email sage-devel http://groups.google.com/group/sage-devel
explaining the problem and send the relevant part of
of /home/chris/Desktop/sage-3.2.1/install.log. Describe your
computer, operating system, etc.
If you want to try to fix the problem, yourself *don't* just cd to
/home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3 and type
'make'.
Instead type "/home/chris/Desktop/sage-3.2.1/sage -sh"
in order to set all environment variables correctly, then cd to
/home/chris/Desktop/sage-3.2.1/spkg/build/atlas-3.8.1.p3
(When you are done debugging, you can type "exit" to leave the
subshell.)
make[1]: *** [installed/atlas-3.8.1.p3] Error 1
make[1]: Leaving directory `/home/chris/Desktop/sage-3.2.1/spkg'
real 74m35.112s
user 49m57.180s
sys 5m5.668s
--~--~---------~--~----~------------~-------~--~----~
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