On Mon, Apr 21, 2008 at 11:54 AM, Rob Goedman <[EMAIL PROTECTED]> wrote: > > This is XCode 3.0 with the updated gcc suite from the Apple developer > site. It sure seems to compile an awful lot before hitting this.
How does one get the "updated gcc suite from the Apple Developer site"? I just found http://developer.apple.com/tools/download/ I absolutely can't find gcc-4.2.1 anywhere on the apple website, and it's definitely not included in XCode 3.0 as far as I can tell. Thanks. > > I wonder how to make this work with R. R has these 100s of packages, > many of which need to be compiled when installed. > > Right now, at least on the Mac, R-2-7 itself supports/contains 4 > architectures ( ppc, x86 each 32 and 64 bits ) and the compilers for > c, c++ and fortran need to match for above package installations > (those that need to be compiled). Until recently there were disastrous > bugs in the compilers for 64 bits (and other issues with gcc4.0, e.g. > when fortran was involved). > > Sage rc1 seems to include R-2.6.1, this week's R-2.7 release will > replace R-2.6.2. > > I have tried gcc-4.0.1 but on my system it will hang forever (might be > related to the broken X11 that ships with Leopard): I've built Sage with gcc-4.0.1 many times on many flavors of OS X... > > gcc -bundle -undefined dynamic_lookup build/temp.macosx-10.3-i386-2.5/ > Users/rob/Downloads/sage-3.0.rc1/spkg/build/python-2.5.2/src/Mac/ > Modules/launch/_Launchmodule.o -L/Users/rob/Downloads/sage-3.0.rc1/ > local/lib -L/usr/local/lib -o build/lib.macosx-10.3-i386-2.5/ > _Launch.so -framework ApplicationServices > *** WARNING: renaming "_Launch" since importing it failed: > dlopen(build/lib.macosx-10.3-i386-2.5/_Launch.so, 2): Symbol not > found: __cg_png_create_info_struct > Referenced from: /System/Library/Frameworks/ > ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ > Versions/A/ImageIO > Expected in: /usr/X11R6/lib/libPng.dylib > > building '_CG' extension > creating build/temp.macosx-10.3-i386-2.5/Users/rob/Downloads/ > sage-3.0.rc1/spkg/build/python-2.5.2/src/Mac/Modules/cg > gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused- > madd -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I. -I/Users/ > rob/Downloads/sage-3.0.rc1/spkg/build/python-2.5.2/src/./Include -I/ > Users/rob/Downloads/sage-3.0.rc1/spkg/build/python-2.5.2/src/./Mac/ > Include -I/Users/rob/Downloads/sage-3.0.rc1/local/include -I. - > IInclude -I./Include -I/usr/local/include -I/Users/rob/Downloads/ > sage-3.0.rc1/spkg/build/python-2.5.2/src/Include -I/Users/rob/ > Downloads/sage-3.0.rc1/spkg/build/python-2.5.2/src -c /Users/rob/ > Downloads/sage-3.0.rc1/spkg/build/python-2.5.2/src/Mac/Modules/cg/ > _CGmodule.c -o build/temp.macosx-10.3-i386-2.5/Users/rob/Downloads/ > sage-3.0.rc1/spkg/build/python-2.5.2/src/Mac/Modules/cg/_CGmodule.o - > Wno-deprecated-declarations > gcc -bundle -undefined dynamic_lookup build/temp.macosx-10.3-i386-2.5/ > Users/rob/Downloads/sage-3.0.rc1/spkg/build/python-2.5.2/src/Mac/ > Modules/cg/_CGmodule.o -L/Users/rob/Downloads/sage-3.0.rc1/local/lib - > L/usr/local/lib -o build/lib.macosx-10.3-i386-2.5/_CG.so -framework > ApplicationServices > > and it will never finish this step. > > My hope is that I can literally use either R.app to work with R and > its libraries and Sage notebooks using the same version of R and > libraries. Maybe the way Sage works with Mathematica? Yes, that is certainly going to be possible with Sage-3.0. It is one of the main new features. > > As MIchael suggested, 3.0.1 stuff! > > Rob > > > > > On Apr 21, 2008, at 9:54 AM, William Stein wrote: > > > > > On Mon, Apr 21, 2008 at 9:31 AM, Rob Goedman <[EMAIL PROTECTED]> wrote: > >> Hi, > >> > >> Brand new to Sage builds! > >> > >> On Mac OS 10.5.2, with: > >> > >> Robs-Intel:sage-3.0.rc0 rob$ gcc -v > >> Using built-in specs. > >> Target: i686-apple-darwin9 > >> Configured with: /var/tmp/gcc_42/gcc_42-5531~1/src/configure -- > >> disable- > >> checking -enable-werror --prefix=/usr --mandir=/usr/share/man -- > >> enable- > >> languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/ > >> s/ > >> $/-4.2/ --with-gxx-include-dir=/usr/include/c++/4.0.0 --with- > >> slibdir=/ > >> usr/lib --build=i686-apple-darwin9 --host=i686-apple-darwin9 -- > >> target=i686-apple-darwin9 > >> Thread model: posix > >> gcc version 4.2.1 (Apple Inc. build 5531) > > ^^^^^^^^^^^^^^^^^^^ > > > > Which version of XCode is this? When did you get it? > > I'm sure your problem is that we haven't ported Sage to work > > with Apple's heavily hacked GCC-4.2.1. > > > > I've been building all my OS X code on all platforms using > > Apples GCC-4.0.1. I wasn't aware that they released GCC-4.2.1. > > My guess is that numerous things will have to be fixed to get > > Sage to build against APPLE-GCC-4.2.1. Your best bet > > is to install a binary or install an older XCode (with GCC-4.0.1) > > or wait until Sage supports GCC-4.2.1, which means 1-2 weeks > > (since obviously I'll upgrade and have to support the newer compiler). > > > > The compiler I use: > > bsd:~ was$ gcc -v > > Using built-in specs. > > Target: i686-apple-darwin9 > > Configured with: /var/tmp/gcc/gcc-5465~16/src/configure > > --disable-checking -enable-werror --prefix=/usr --mandir=/share/man > > --enable-languages=c,objc,c++,obj-c++ > > --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ > > --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib > > --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic > > --host=i686-apple-darwin9 --target=i686-apple-darwin9 > > Thread model: posix > > gcc version 4.0.1 (Apple Inc. build 5465) > > bsd:~ was$ > > > > > > -- William > > > >> > >> make gives below (summarized) error on 2.11, alpha6, rc0 and rc1. > >> Below attachment contains the complete rc1 install.log . > >> > >> If, as a quick test, the Mac specific '-fasm-blocks' flag is added in > >> the subdir cipher, make complains about the assembler code in the asm > >> block in poll_padlock. > >> > >> Do I have to disable ENABLE_PADLOCK_SUPPORT? If so, can I force the > >> sage make to use './configure -disable_padlock_support'? > >> > >> As this is not related to the upcoming Sage 3.0 release, I'm fine to > >> wait for a binary release, although ultimately I would like to be > >> able > >> to build sage myself. > >> > >> Thanks, > >> Rob > >> > >> ---------------------------------------------- > >> > >> Making all in cipher > >> /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H - > >> I. - > >> I.. -I../src -I../src -I/Users/rob/Downloads/sage-3.0.rc0/local/ > >> include -I/Users/rob/Downloads/sage-3.0.rc0/local/include -g -O2 - > >> Wall > >> -Wpointer-arith -MT cipher.lo -MD -MP -MF .deps/cipher.Tpo -c -o > >> cipher.lo cipher.c > >> mkdir .libs > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../src -I/Users/rob/ > >> Downloads/sage-3.0.rc0/local/include -I/Users/rob/Downloads/ > >> sage-3.0.rc0/local/include -g -O2 -Wall -Wpointer-arith -MT > >> cipher.lo - > >> MD -MP -MF .deps/cipher.Tpo -c cipher.c -fno-common -DPIC -o .libs/ > >> cipher.o > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../src -I/Users/rob/ > >> Downloads/sage-3.0.rc0/local/include -I/Users/rob/Downloads/ > >> sage-3.0.rc0/local/include -g -O2 -Wall -Wpointer-arith -MT > >> cipher.lo - > >> MD -MP -MF .deps/cipher.Tpo -c cipher.c -o cipher.o >/dev/null 2>&1 > >> mv -f .deps/cipher.Tpo .deps/cipher.Plo > >> /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H - > >> I. - > >> I.. -I../src -I../src -I/Users/rob/Downloads/sage-3.0.rc0/local/ > >> include -I/Users/rob/Downloads/sage-3.0.rc0/local/include -g -O2 - > >> Wall > >> -Wpointer-arith -MT pubkey.lo -MD -MP -MF .deps/pubkey.Tpo -c -o > >> pubkey.lo pubkey.c > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../src -I/Users/rob/ > >> Downloads/sage-3.0.rc0/local/include -I/Users/rob/Downloads/ > >> sage-3.0.rc0/local/include -g -O2 -Wall -Wpointer-arith -MT > >> pubkey.lo - > >> MD -MP -MF .deps/pubkey.Tpo -c pubkey.c -fno-common -DPIC -o .libs/ > >> pubkey.o > >> > >> ... > >> > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../src -I/Users/rob/ > >> Downloads/sage-3.0.rc0/local/include -I/Users/rob/Downloads/ > >> sage-3.0.rc0/local/include -g -O2 -Wall -Wpointer-arith -MT > >> random.lo - > >> MD -MP -MF .deps/random.Tpo -c random.c -fno-common -DPIC -o .libs/ > >> random.o > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../src -I/Users/rob/ > >> Downloads/sage-3.0.rc0/local/include -I/Users/rob/Downloads/ > >> sage-3.0.rc0/local/include -g -O2 -Wall -Wpointer-arith -MT > >> random.lo - > >> MD -MP -MF .deps/random.Tpo -c random.c -o random.o >/dev/null 2>&1 > >> mv -f .deps/random.Tpo .deps/random.Plo > >> /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H - > >> I. - > >> I.. -I../src -I../src -I/Users/rob/Downloads/sage-3.0.rc0/local/ > >> include -I/Users/rob/Downloads/sage-3.0.rc0/local/include -g -O2 - > >> Wall > >> -Wpointer-arith -MT rndhw.lo -MD -MP -MF .deps/rndhw.Tpo -c -o > >> rndhw.lo rndhw.c > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../src -I/Users/rob/ > >> Downloads/sage-3.0.rc0/local/include -I/Users/rob/Downloads/ > >> sage-3.0.rc0/local/include -g -O2 -Wall -Wpointer-arith -MT > >> rndhw.lo - > >> MD -MP -MF .deps/rndhw.Tpo -c rndhw.c -fno-common -DPIC -o .libs/ > >> rndhw.o > >> rndhw.c: In function 'poll_padlock': > >> rndhw.c:60: error: asm blocks not enabled, use `-fasm-blocks' > >> rndhw.c:60: error: expected identifier before '(' token > >> rndhw.c:60: confused by earlier errors, bailing out > >> make[4]: *** [rndhw.lo] Error 1 > >> make[3]: *** [all-recursive] Error 1 > >> make[2]: *** [all] Error 2 > >> failed to build libgcrypt > >> > >> real 0m34.193s > >> user 0m17.394s > >> sys 0m14.601s > >> sage: An error occurred while installing libgcrypt-1.4.0.p1 > >> Please email sage-devel http://groups.google.com/group/sage-devel > >> explaining the problem and send the relevant part of > >> of /Users/rob/Downloads/sage-3.0.rc0/install.log. Describe your > >> computer, operating system, etc. > >> If you want to try to fix the problem, yourself *don't* just cd to > >> /Users/rob/Downloads/sage-3.0.rc0/spkg/build/libgcrypt-1.4.0.p1 and > >> type 'make'. > >> Instead type "/Users/rob/Downloads/sage-3.0.rc0/sage -sh" > >> in order to set all environment variables correctly, then cd to > >> /Users/rob/Downloads/sage-3.0.rc0/spkg/build/libgcrypt-1.4.0.p1 > >> (When you are done debugging, you can type "exit" to leave the > >> subshell.) > >> make[1]: *** [installed/libgcrypt-1.4.0.p1] Error 1 > >> > >> real 15m9.941s > >> user 11m47.843s > >> sys 2m35.299s > >> > >> --------------------------------------------------------------- > >> > >> > >> > >>> > >> > >> > >> > >> > > > > > > > > -- > > > William Stein > > Associate Professor of Mathematics > > University of Washington > > http://wstein.org > > > > > > > > > > > > -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~----------~----~----~----~------~----~------~--~---
