Looks like your conda env is missing some dependencies. I suggest you follow https://doc-develop--sagemath.netlify.app/html/en/developer/walkthrough
On Thursday, June 26, 2025 at 5:40:49 AM UTC+2 janmenjay...@gmail.com wrote: > Hello, > I ran the following command as a part of an installation error: > > ./sage -sh > ./sage -b local spkg sagelib-10.7.beta6 > > This is the output: > (sage) janmenjaya@alpha-zero:~/open-source/sage$ ./sage -sh > Starting subshell with Sage environment variables set. Don't forget > to exit when you are done. Beware: > * Do not do anything with other copies of Sage on your system. > * Do not use this for installing Sage packages using "sage -i" or for > running "make" at Sage's root directory. These should be done > outside the Sage shell. > > Bypassing shell configuration files... > > Note: SAGE_ROOT=/home/janmenjaya/open-source/sage > (sage-sh) janmenjaya@alpha-zero:sage$ sage -b local spkg sagelib-10.7.beta6 > make build/make/Makefile --stop > make[1]: Entering directory '/home/janmenjaya/open-source/sage' > make[1]: 'build/make/Makefile' is up to date. > make[1]: Leaving directory '/home/janmenjaya/open-source/sage' > build/bin/sage-logger \ > "cd build/make && ./install 'sagelib-no-deps'" logs/install.log > make[1]: Entering directory '/home/janmenjaya/open-source/sage/build/make' > make[1]: Leaving directory '/home/janmenjaya/open-source/sage/build/make' > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** > > ADDR2LINE=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-addr2line > ARCHFLAGS= > AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ar > AS=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-as > build_alias=x86_64-conda-linux-gnu > BUILD=x86_64-conda-linux-gnu > CCACHE_BASEDIR=/home/janmenjaya/open-source/sage > > CC_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc > CC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc > CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC > -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem > /home/janmenjaya/miniconda3/envs/sage/include > CHMOD=chmod > CMAKE_ARGS=-DCMAKE_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ar > > -DCMAKE_CXX_COMPILER_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar > > -DCMAKE_C_COMPILER_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar > > -DCMAKE_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ranlib > > -DCMAKE_CXX_COMPILER_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib > > -DCMAKE_C_COMPILER_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib > > -DCMAKE_LINKER=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld > > -DCMAKE_STRIP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strip > > -DCMAKE_BUILD_TYPE=Release > > CMAKE_PREFIX_PATH=/home/janmenjaya/miniconda3/envs/sage:/home/janmenjaya/miniconda3/envs/sage/x86_64-conda-linux-gnu/sysroot/usr > COLORTERM=truecolor > > CONDA_BUILD_SYSROOT=/home/janmenjaya/miniconda3/envs/sage/x86_64-conda-linux-gnu/sysroot > CONDA_DEFAULT_ENV=sage > CONDA_EXE=/home/janmenjaya/miniconda3/bin/conda > CONDA_PREFIX=/home/janmenjaya/miniconda3/envs/sage > CONDA_PROMPT_MODIFIER=(sage) > CONDA_PYTHON_EXE=/home/janmenjaya/miniconda3/bin/python > _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_linux_gnu > CONDA_SHLVL=1 > CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu > CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu > CPATH=/home/janmenjaya/open-source/sage/local/include > CP=cp > CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem > /home/janmenjaya/miniconda3/envs/sage/include > CPP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cpp > > CXXFILT=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++filt > CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona > -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 > -ffunction-sections -pipe -isystem > /home/janmenjaya/miniconda3/envs/sage/include > > CXX_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++ > CXX=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++ > CYSIGNALS_CRASH_DAYS=7 > CYSIGNALS_CRASH_LOGS=/home/janmenjaya/.sage//crash_logs > DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus > DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC > -fstack-protector-all -fno-plt -Og -g -Wall -Wextra > -fvar-tracking-assignments -ffunction-sections -pipe -isystem > /home/janmenjaya/miniconda3/envs/sage/include > DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem > /home/janmenjaya/miniconda3/envs/sage/include > DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 > -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all > -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments > -ffunction-sections -pipe -isystem > /home/janmenjaya/miniconda3/envs/sage/include > DEBUG_FFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC > -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem > /home/janmenjaya/miniconda3/envs/sage/include > -I/home/janmenjaya/miniconda3/envs/sage/include -march=nocona > -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g > -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none > -fvar-tracking-assignments -ffunction-sections -pipe > DEBUG_FORTRANFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC > -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem > /home/janmenjaya/miniconda3/envs/sage/include > -I/home/janmenjaya/miniconda3/envs/sage/include -march=nocona > -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g > -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none > -fvar-tracking-assignments -ffunction-sections -pipe > DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path > DESKTOP_SESSION=ubuntu > DISPLAY=:0 > DOT_SAGE=/home/janmenjaya/.sage/ > DWP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-dwp > > ELFEDIT=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-elfedit > ENVMAN_LOAD=loaded > > F77=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran > > F90=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran > > F95=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran > > FC_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran > > FC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran > FFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC > -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem > /home/janmenjaya/miniconda3/envs/sage/include > -I/home/janmenjaya/miniconda3/envs/sage/include > FORTRANFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC > -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem > /home/janmenjaya/miniconda3/envs/sage/include > -I/home/janmenjaya/miniconda3/envs/sage/include > > GCC_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar > GCC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc > > GCC_NM=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-nm > > GCC_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib > GDMSESSION=ubuntu > > GFORTRAN=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran > GJS_DEBUG_OUTPUT=stderr > GJS_DEBUG_TOPICS=JS ERROR;JS LOG > GNOME_DESKTOP_SESSION_ID=this-is-deprecated > GNOME_SHELL_SESSION_MODE=ubuntu > > GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/df94a991_4ebc_452d_bf0a_8cef9f5b0fd1 > GNOME_TERMINAL_SERVICE=:1.403 > GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1 > > GPROF=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gprof > GSETTINGS_SCHEMA_DIR_CONDA_BACKUP= > > GSETTINGS_SCHEMA_DIR=/home/janmenjaya/miniconda3/envs/sage/share/glib-2.0/schemas > GTK_MODULES=gail:atk-bridge > GXX=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-g++ > HOME=/home/janmenjaya > host_alias=x86_64-conda-linux-gnu > HOST=x86_64-conda-linux-gnu > id=2090 > ID=Introduction to Scientific Computing > IM_CONFIG_PHASE=1 > INFOPATH=/home/janmenjaya/open-source/sage/local/share/info:: > INVOCATION_ID=cb452b47793749b8a39ff753d3bc664b > IPYTHONDIR=/home/janmenjaya/.sage//ipython-5.0.0 > JOURNAL_STREAM=8:53677 > JUPYTER_CONFIG_DIR=/home/janmenjaya/.sage//jupyter-4.1 > LANG=en_IN > LANGUAGE=en_IN:en > LDFLAGS=-Wl,-rpath-link,/home/janmenjaya/open-source/sage/local/lib > -L/home/janmenjaya/open-source/sage/local/lib > -Wl,-rpath,/home/janmenjaya/open-source/sage/local/lib -Wl,-O2 > -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now > -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined > -Wl,-rpath,/home/janmenjaya/miniconda3/envs/sage/lib > -Wl,-rpath-link,/home/janmenjaya/miniconda3/envs/sage/lib > -L/home/janmenjaya/miniconda3/envs/sage/lib > > LD_GOLD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld.gold > LD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld > LESSCLOSE=/usr/bin/lesspipe %s %s > LESSOPEN=| /usr/bin/lesspipe %s > LIBRARY_PATH=/home/janmenjaya/open-source/sage/local/lib > LN=ln > LOGNAME=janmenjaya > > LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: > MAKEFLAGS= V=1 > MAKELEVEL=1 > MAKE=make > MAKE_TERMERR=/dev/pts/2 > MAKE_TERMOUT=/dev/pts/2 > MANAGERPID=1774 > MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path > MATHEMATICA_HOME=/usr/share/Wolfram/Documentation/13.3/en-us > MATLAB=/usr/local/MATLAB > MAXIMA_USERDIR=/home/janmenjaya/.sage//maxima > MESON_ARGS=-Dbuildtype=release > MFLAGS= > MKDIR=mkdir > MODSIZE=10000 > MODTEMPFILE=file.txt.oD7PkoBnBpIkZxQiXzda > MPLCONFIGDIR=/home/janmenjaya/.sage//matplotlib-1.5.1 > MV=mv > MYMC=Laptop > NM=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-nm > > OBJCOPY=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-objcopy > > OBJDUMP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-objdump > OLDPWD=/home/janmenjaya/open-source/sage > OPENBLAS_NUM_THREADS=1 > > PATH=/home/janmenjaya/open-source/sage/build/bin:/home/janmenjaya/open-source/sage/src/bin:/home/janmenjaya/open-source/sage/local/bin:/home/janmenjaya/open-source/sage/src/bin:/home/janmenjaya/open-source/sage/build/bin:/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/bin:/home/janmenjaya/open-source/sage/local/bin:/home/janmenjaya/miniconda3/envs/sage/bin:/usr/local/bin:/home/janmenjaya/miniconda3/condabin:/home/janmenjaya/.local/bin:/home/janmenjaya/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/janmenjaya/install/ParaView-5.12/bin > PERL5LIB=/home/janmenjaya/open-source/sage/local/lib/perl5: > PKG_CONFIG_PATH=/home/janmenjaya/open-source/sage/local/lib/pkgconfig > PWD=/home/janmenjaya/open-source/sage/build/make > PYDEVD_DISABLE_FILE_VALIDATION=1 > PYTHON_EGG_CACHE=/home/janmenjaya/.sage//.python-eggs > PYTHONPATH=/home/janmenjaya/open-source/sage/local > PYTHONUSERBASE=/home/janmenjaya/.sage//local > QT_ACCESSIBILITY=1 > QT_IM_MODULE=ibus > > RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ranlib > > READELF=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-readelf > R_MAKEVARS_USER=/home/janmenjaya/.sage//R/Makevars.user > __sage__= > SAGE_DISTFILES=/home/janmenjaya/open-source/sage/upstream > SAGE_DOC=/home/janmenjaya/open-source/sage/local/share/doc/sage > SAGE_DOC_SRC=/home/janmenjaya/open-source/sage/src/doc > SAGE_ENV_CONFIG_SOURCED=1 > > SAGE_ENV_SOURCED=6:/home/janmenjaya/open-source/sage/local:/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5:/home/janmenjaya/open-source/sage/src > SAGE_LOCAL=/home/janmenjaya/open-source/sage/local > SAGE_LOGFILE=logs/install.log > SAGE_LOGS=/home/janmenjaya/open-source/sage/logs/pkgs > SAGE_NUM_THREADS=1 > SAGE_NUM_THREADS_PARALLEL=2 > > SAGE_ORIG_PATH=/home/janmenjaya/miniconda3/envs/sage/bin:/usr/local/bin:/home/janmenjaya/miniconda3/condabin:/home/janmenjaya/.local/bin:/home/janmenjaya/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/janmenjaya/install/ParaView-5.12/bin > SAGE_ORIG_PATH_SET=True > SAGE_PKGCONFIG=/home/janmenjaya/open-source/sage/local/lib/pkgconfig > SAGE_REPO_ANONYMOUS=https://github.com/sagemath/sage.git > SAGE_REPO_AUTHENTICATED=https://github.com/sagemath/sage.git > SAGE_ROOT=/home/janmenjaya/open-source/sage > SAGE_SHARE=/home/janmenjaya/open-source/sage/local/share > > SAGE_SPKG_INST=/home/janmenjaya/open-source/sage/local/var/lib/sage/installed > SAGE_SRC=/home/janmenjaya/open-source/sage/src > SAGE_STARTUP_FILE=/home/janmenjaya/.sage//init.sage > > SAGE_VENV=/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5 > _SBCL_HOME_CONDA_BACKUP= > SBCL_HOME=/home/janmenjaya/miniconda3/envs/sage/lib/sbcl > > SESSION_MANAGER=local/alpha-zero:@/tmp/.ICE-unix/1923,unix/alpha-zero:/tmp/.ICE-unix/1923 > SHELL=/bin/bash > SHLVL=5 > SIZE=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-size > SSH_AGENT_PID=1885 > SSH_AUTH_SOCK=/run/user/1000/keyring/ssh > > STRINGS=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strings > > STRIP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strip > TERMINFO=/home/janmenjaya/open-source/sage/local/share/terminfo > TERM=xterm-256color > TOUCH=touch > UNAME=Linux > USER=janmenjaya > USERNAME=janmenjaya > _=/usr/bin/env > VTE_VERSION=6003 > WINDOWPATH=2 > XAUTHORITY=/run/user/1000/gdm/Xauthority > XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg > XDG_CURRENT_DESKTOP=ubuntu:GNOME > > XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop > XDG_MENU_PREFIX=gnome- > XDG_RUNTIME_DIR=/run/user/1000 > XDG_SESSION_CLASS=user > XDG_SESSION_DESKTOP=ubuntu > XDG_SESSION_TYPE=x11 > XML_CATALOG_FILES=file:///home/janmenjaya/miniconda3/envs/sage/etc/xml/catalog > > file:///etc/xml/catalog > XMODIFIERS=@im=ibus > *********************************************** > make[1]: Entering directory '/home/janmenjaya/open-source/sage/build/make' > [sagelib-10.7.beta6] Setting up build directory > /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6 > [sagelib-10.7.beta6] Host system: Linux alpha-zero 5.15.0-139-generic > #149~20.04.1-Ubuntu SMP Wed Apr 16 08:29:56 UTC 2025 x86_64 x86_64 x86_64 > GNU/Linux > [sagelib-10.7.beta6] C compiler: > /home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc, > Reading specs from > /home/janmenjaya/miniconda3/envs/sage/bin/../lib/gcc/x86_64-conda-linux-gnu/13.3.0/specs, > > could not find specs file conda.specs, > COLLECT_GCC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc, > > COLLECT_LTO_WRAPPER=/home/janmenjaya/miniconda3/envs/sage/bin/../libexec/gcc/x86_64-conda-linux-gnu/13.3.0/lto-wrapper, > > Target: x86_64-conda-linux-gnu, Configured with: ../configure > --prefix=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho > > --with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib > > --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib > > --mandir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/man > > --build=x86_64-conda-linux-gnu --host=x86_64-conda-linux-gnu > --target=x86_64-conda-linux-gnu > --enable-languages=c,c++,fortran,objc,obj-c++ --enable-__cxa_atexit > --disable-libmudflap --enable-libgomp --disable-libssp --enable-libquadmath > --enable-libquadmath-support --enable-lto --enable-target-optspace > --enable-plugin --enable-gold --disable-nls --disable-bootstrap > --disable-multilib --enable-long-long > --with-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/sysroot > > --with-build-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/work/cf-compilers/x86_64-conda-linux-gnu/sysroot > > --with-native-system-header-dir=/usr/include > --with-gxx-include-dir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/gcc/x86_64-conda-linux-gnu/13.3.0/include/c++ > > --with-pkgversion='conda-forge gcc 13.3.0-2' --with-bugurl= > https://github.com/conda-forge/ctng-compilers-feedstock/issues/new/choose > --enable-libsanitizer --enable-default-pie --enable-threads=posix, Thread > model: posix, Supported LTO compression algorithms: zlib, gcc version > 13.3.0 (conda-forge gcc 13.3.0-2) > [sagelib-10.7.beta6] No stamp file for package 'sagelib' in > /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/lib/sage/installed > [sagelib-10.7.beta6] No spkg-legacy-uninstall script; nothing to do > [sagelib-10.7.beta6] [spkg-install] Installing sagelib-10.7.beta6 > (editable mode) > [sagelib-10.7.beta6] [spkg-install] Using pip 25.1.1 from > /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip > (python 3.11) > [sagelib-10.7.beta6] [spkg-install] Obtaining > file:///home/janmenjaya/open-source/sage/src > [sagelib-10.7.beta6] [spkg-install] Checking if build backend supports > build_editable: started > [sagelib-10.7.beta6] [spkg-install] Running command Checking if build > backend supports build_editable > [sagelib-10.7.beta6] [spkg-install] Checking if build backend supports > build_editable: finished with status 'done' > [sagelib-10.7.beta6] [spkg-install] Preparing editable metadata > (pyproject.toml): started > [sagelib-10.7.beta6] [spkg-install] Running command Preparing editable > metadata (pyproject.toml) > [sagelib-10.7.beta6] [spkg-install] > /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/dist.py:759: > > SetuptoolsDeprecationWarning: License classifiers are deprecated. > [sagelib-10.7.beta6] [spkg-install] !! > [sagelib-10.7.beta6] [spkg-install] > [sagelib-10.7.beta6] [spkg-install] > ******************************************************************************** > [sagelib-10.7.beta6] [spkg-install] Please consider removing the > following classifiers in favor of a SPDX license expression: > [sagelib-10.7.beta6] [spkg-install] > [sagelib-10.7.beta6] [spkg-install] License :: OSI Approved :: > GNU General Public License v2 or later (GPLv2+) > [sagelib-10.7.beta6] [spkg-install] > [sagelib-10.7.beta6] [spkg-install] See > https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license > for details. > [sagelib-10.7.beta6] [spkg-install] > ******************************************************************************** > [sagelib-10.7.beta6] [spkg-install] > [sagelib-10.7.beta6] [spkg-install] !! > [sagelib-10.7.beta6] [spkg-install] self._finalize_license_expression() > [sagelib-10.7.beta6] [spkg-install] running dist_info > [sagelib-10.7.beta6] [spkg-install] creating > /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info > [sagelib-10.7.beta6] [spkg-install] writing > /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/PKG-INFO > [sagelib-10.7.beta6] [spkg-install] writing dependency_links to > /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/dependency_links.txt > [sagelib-10.7.beta6] [spkg-install] writing requirements to > /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/requires.txt > [sagelib-10.7.beta6] [spkg-install] writing top-level names to > /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/top_level.txt > [sagelib-10.7.beta6] [spkg-install] writing manifest file > '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt' > [sagelib-10.7.beta6] [spkg-install] reading manifest file > '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt' > [sagelib-10.7.beta6] [spkg-install] reading manifest template > 'MANIFEST.in' > [sagelib-10.7.beta6] [spkg-install] no previously-included directories > found matching 'sage/ext/interpreters' > [sagelib-10.7.beta6] [spkg-install] no previously-included directories > found matching 'sage_docbuild' > [sagelib-10.7.beta6] [spkg-install] no previously-included directories > found matching 'doc' > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files found matching 'sage_setup/autogen/giacpy*' > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching '*.c' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching '*.cpp' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files found matching 'sage/graphs/bliss.p*' > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files found matching 'sage/libs/sirocco.p*' > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files found matching 'sage/graphs/graph_decompositions/tdlib.p*' > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching 'all__sagemath_bliss.py' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching 'all__sagemath_coxeter3.py' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching 'all__sagemath_mcqd.py' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching 'all__sagemath_meataxe.py' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching 'all__sagemath_sirocco.py' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching 'all__sagemath_tdlib.py' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching '__pycache__' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching '*.bak' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching '*.so' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] warning: no previously-included > files matching '*~' found anywhere in distribution > [sagelib-10.7.beta6] [spkg-install] no previously-included directories > found matching '.tox' > [sagelib-10.7.beta6] [spkg-install] no previously-included directories > found matching 'build' > [sagelib-10.7.beta6] [spkg-install] no previously-included directories > found matching 'dist' > [sagelib-10.7.beta6] [spkg-install] adding license file 'LICENSE.txt' > [sagelib-10.7.beta6] [spkg-install] writing manifest file > '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt' > [sagelib-10.7.beta6] [spkg-install] creating > '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard-10.7b6.dist-info' > [sagelib-10.7.beta6] [spkg-install] Preparing editable metadata > (pyproject.toml): finished with status 'done' > [sagelib-10.7.beta6] [spkg-install] Building wheels for collected > packages: sagemath-standard > [sagelib-10.7.beta6] [spkg-install] Building editable for > sagemath-standard (pyproject.toml): started > [sagelib-10.7.beta6] [spkg-install] Running command Building editable > for sagemath-standard (pyproject.toml) > [sagelib-10.7.beta6] [spkg-install] Generating interpreters for > fast_callable in /home/janmenjaya/open-source/sage/src/sage/ext/interpreters > [sagelib-10.7.beta6] [spkg-install] -> First build of interpreters > [sagelib-10.7.beta6] [spkg-install] > ************************************************************************ > [sagelib-10.7.beta6] [spkg-install] Traceback (most recent call last): > [sagelib-10.7.beta6] [spkg-install] File > "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", > > line 389, in <module> > [sagelib-10.7.beta6] [spkg-install] main() > [sagelib-10.7.beta6] [spkg-install] File > "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", > > line 373, in main > [sagelib-10.7.beta6] [spkg-install] json_out["return_val"] = > hook(**hook_input["kwargs"]) > [sagelib-10.7.beta6] [spkg-install] > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ > [sagelib-10.7.beta6] [spkg-install] File > "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", > > line 303, in build_editable > [sagelib-10.7.beta6] [spkg-install] return hook(wheel_directory, > config_settings, metadata_directory) > [sagelib-10.7.beta6] [spkg-install] > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ > [sagelib-10.7.beta6] [spkg-install] File > "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", > > line 468, in build_editable > [sagelib-10.7.beta6] [spkg-install] return self._build_with_temp_dir( > [sagelib-10.7.beta6] [spkg-install] ^^^^^^^^^^^^^^^^^^^^^^^^^^ > [sagelib-10.7.beta6] [spkg-install] File > "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", > > line 404, in _build_with_temp_dir > [sagelib-10.7.beta6] [spkg-install] self.run_setup() > [sagelib-10.7.beta6] [spkg-install] File > "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", > > line 317, in run_setup > [sagelib-10.7.beta6] [spkg-install] exec(code, locals()) > [sagelib-10.7.beta6] [spkg-install] File "<string>", line 93, in > <module> > [sagelib-10.7.beta6] [spkg-install] ModuleNotFoundError: No module named > 'Cython' > [sagelib-10.7.beta6] [spkg-install] > ************************************************************************ > [sagelib-10.7.beta6] [spkg-install] Error building the Sage library > [sagelib-10.7.beta6] [spkg-install] > ************************************************************************ > [sagelib-10.7.beta6] [spkg-install] Please email sage-devel ( > http://groups.google.com/group/sage-devel) > [sagelib-10.7.beta6] [spkg-install] explaining the problem and including > the relevant part of the log file > [sagelib-10.7.beta6] [spkg-install] > [sagelib-10.7.beta6] [spkg-install] Describe your computer, operating > system, etc. > [sagelib-10.7.beta6] [spkg-install] > ************************************************************************ > [sagelib-10.7.beta6] [spkg-install] error: subprocess-exited-with-error > [sagelib-10.7.beta6] [spkg-install] > [sagelib-10.7.beta6] [spkg-install] × Building editable for > sagemath-standard (pyproject.toml) did not run successfully. > [sagelib-10.7.beta6] [spkg-install] │ exit code: 1 > [sagelib-10.7.beta6] [spkg-install] ╰─> See above for output. > [sagelib-10.7.beta6] [spkg-install] > [sagelib-10.7.beta6] [spkg-install] note: This error originates from a > subprocess, and is likely not a problem with pip. > [sagelib-10.7.beta6] [spkg-install] full command: > /home/janmenjaya/miniconda3/envs/sage/bin/python3 > /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py > > build_editable /tmp/tmpqxppr0j0 > [sagelib-10.7.beta6] [spkg-install] cwd: > /home/janmenjaya/open-source/sage/src > [sagelib-10.7.beta6] [spkg-install] Building editable for > sagemath-standard (pyproject.toml): finished with status 'error' > [sagelib-10.7.beta6] [spkg-install] ERROR: Failed building editable for > sagemath-standard > [sagelib-10.7.beta6] [spkg-install] Failed to build sagemath-standard > [sagelib-10.7.beta6] [spkg-install] ERROR: Failed to build installable > wheels for some pyproject.toml based projects (sagemath-standard) > [sagelib-10.7.beta6] [spkg-install] > ******************************************************************************************************************************************** > [sagelib-10.7.beta6] [spkg-install] Error installing sagelib-10.7.beta6 > [sagelib-10.7.beta6] [spkg-install] > ******************************************************************************************************************************************** > [sagelib-10.7.beta6] > ************************************************************************ > [sagelib-10.7.beta6] Error installing package sagelib-10.7.beta6 > [sagelib-10.7.beta6] > ************************************************************************ > [sagelib-10.7.beta6] Please email sage-devel ( > http://groups.google.com/group/sage-devel) > [sagelib-10.7.beta6] explaining the problem and including the log files > [sagelib-10.7.beta6] > /home/janmenjaya/open-source/sage/logs/pkgs/sagelib-10.7.beta6.log > [sagelib-10.7.beta6] and > [sagelib-10.7.beta6] /home/janmenjaya/open-source/sage/config.log > [sagelib-10.7.beta6] Describe your computer, operating system, etc. > [sagelib-10.7.beta6] If you want to try to fix the problem yourself, > *don't* just cd to > [sagelib-10.7.beta6] > /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6 > > and type 'make' or whatever is appropriate. > [sagelib-10.7.beta6] Instead, the following commands setup all environment > variables > [sagelib-10.7.beta6] correctly and load a subshell for you to debug the > error: > [sagelib-10.7.beta6] (cd > '/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6' > > && '/home/janmenjaya/open-source/sage/sage' --buildsh) > [sagelib-10.7.beta6] When you are done debugging, you can type "exit" to > leave the subshell. > [sagelib-10.7.beta6] > ************************************************************************ > make[1]: *** [Makefile:3547: sagelib-SAGE_VENV-no-deps] Error 1 > make[1]: Leaving directory '/home/janmenjaya/open-source/sage/build/make' > *************************************************************** > Error building Sage. > > The following package(s) may have failed to build (not necessarily > during this run of 'make sagelib-no-deps'): > > * package: brial-1.2.8 > last build time: Jun 26 08:50 > log file: > /home/janmenjaya/open-source/sage/logs/pkgs/brial-1.2.8.log > > * package: sagelib-10.7.beta6 > last build time: Jun 26 09:03 > log file: > /home/janmenjaya/open-source/sage/logs/pkgs/sagelib-10.7.beta6.log > > It is safe to delete any log files and build directories, but they > contain information that is helpful for debugging build problems. > WARNING: If you now run 'make' again, the build directory of the > same version of the package will, by default, be deleted. Set the > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. > > make: *** [Makefile:40: sagelib-no-deps] Error 1 > > > I have attached the log files and my systems configuration herewith. > > I will appreciate, if someone could please kindly help me in this regard. > Please do let me know, if I need to provide any other details as well. > > Thanks and warm regards, > Janmenjaya -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion visit https://groups.google.com/d/msgid/sage-devel/e5f74319-0295-490e-bf5e-b6d710a0c620n%40googlegroups.com.
