Hey I was trying to install/get started with sage. When I run make, I get the following Error: Error building python3-3.12.5
Went into the log to see Error and it said to post it here. Not sure if it matters, but I was trying to installed sage earlier with make, then interrupted it (with keyboard interrupt) to apply the .highly /configure option 11. Optional but highly recommended ... export MAKEFLAGS="-j$(nproc) -l$(nproc).5" from the readme.md (https://github.com/sagemath/sage/blob/develop/README.md) so it does not take ages to install sage, After I did this I ran make again and then got this error. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion visit https://groups.google.com/d/msgid/sage-devel/539f52b8-1888-46d6-b068-f787c9c09ce9n%40googlegroups.com.
Using cached file /home/akio/sage/upstream/Python-3.12.5.tar.xz Setting up build directory /home/akio/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/python3-3.12.5 No patch files found in ../patches Host system: Linux myThinkpad 6.8.0-38-generic #38-Ubuntu SMP PREEMPT_DYNAMIC Fri Jun 7 15:25:01 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux C compiler: gcc, Using built-in specs., COLLECT_GCC=gcc, COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-linux-gnu/13/lto-wrapper, OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa, OFFLOAD_TARGET_DEFAULT=1, Target: x86_64-linux-gnu, Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.3.0-6ubuntu2~24.04' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-13-fG75Ri/gcc-13-13.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-fG75Ri/gcc-13-13.3.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2, Thread model: posix, Supported LTO compression algorithms: zlib zstd, gcc version 13.3.0 (Ubuntu 13.3.0-6ubuntu2~24.04) No stamp file for package 'python3' in /home/akio/sage/local/var/lib/sage/venv-python3.12.5/var/lib/sage/installed [spkg-legacy-uninstall] Cleaning out old python / python3 / python3 venv binaries [spkg-build] Configuring python3-3.12.5 [spkg-build] configure: WARNING: unrecognized options: --disable-static, --disable-maintainer-mode, --disable-dependency-tracking [spkg-build] checking build system type... x86_64-pc-linux-gnu [spkg-build] checking host system type... x86_64-pc-linux-gnu [spkg-build] checking for Python interpreter freezing... ./_bootstrap_python [spkg-build] checking for python3.12... python3.12 [spkg-build] checking Python for regen version... 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(cached) yes [spkg-build] checking for setns... yes [spkg-build] checking for unshare... yes [spkg-build] checking for libxcrypt >= 3.1.1... yes [spkg-build] checking for crypt or crypt_r... yes [spkg-build] checking for clock_gettime... yes [spkg-build] checking for clock_getres... yes [spkg-build] checking for clock_settime... yes [spkg-build] checking for clock_nanosleep... yes [spkg-build] checking for nanosleep... yes [spkg-build] checking for major, minor, and makedev... yes [spkg-build] checking for getaddrinfo... yes [spkg-build] checking getaddrinfo bug... no [spkg-build] checking for getnameinfo... yes [spkg-build] checking whether struct tm is in sys/time.h or time.h... time.h [spkg-build] checking for struct tm.tm_zone... yes [spkg-build] checking for struct stat.st_rdev... yes [spkg-build] checking for struct stat.st_blksize... yes [spkg-build] checking for struct stat.st_flags... no [spkg-build] checking for struct stat.st_gen... no [spkg-build] checking for struct stat.st_birthtime... no [spkg-build] checking for struct stat.st_blocks... yes [spkg-build] checking for struct passwd.pw_gecos... yes [spkg-build] checking for struct passwd.pw_passwd... yes [spkg-build] checking for siginfo_t.si_band... yes [spkg-build] checking for time.h that defines altzone... no [spkg-build] checking for addrinfo... yes [spkg-build] checking for sockaddr_storage... yes [spkg-build] checking for sockaddr_alg... yes [spkg-build] checking for an ANSI C-conforming const... yes [spkg-build] checking for working signed char... yes [spkg-build] checking for prototypes... yes [spkg-build] checking for socketpair... yes [spkg-build] checking if sockaddr has sa_len member... no [spkg-build] checking for gethostbyname_r... yes [spkg-build] checking gethostbyname_r with 6 args... yes [spkg-build] checking for __fpu_control... yes [spkg-build] checking for --with-libm=STRING... default LIBM="-lm" [spkg-build] checking for --with-libc=STRING... default LIBC="" [spkg-build] checking for x64 gcc inline assembler... yes [spkg-build] checking whether float word ordering is bigendian... no [spkg-build] checking whether we can use gcc inline assembler to get and set x87 control word... yes [spkg-build] checking whether we can use gcc inline assembler to get and set mc68881 fpcr... no [spkg-build] checking for x87-style double rounding... no [spkg-build] checking for acosh... yes [spkg-build] checking for asinh... yes [spkg-build] checking for atanh... yes [spkg-build] checking for erf... yes [spkg-build] checking for erfc... yes [spkg-build] checking for expm1... yes [spkg-build] checking for log1p... yes [spkg-build] checking for log2... yes [spkg-build] checking whether POSIX semaphores are enabled... yes [spkg-build] checking for broken sem_getvalue... no [spkg-build] checking whether RTLD_LAZY is declared... yes [spkg-build] checking whether RTLD_NOW is declared... yes [spkg-build] checking whether RTLD_GLOBAL is declared... yes [spkg-build] checking whether RTLD_LOCAL is declared... yes [spkg-build] checking whether RTLD_NODELETE is declared... yes [spkg-build] checking whether RTLD_NOLOAD is declared... yes [spkg-build] checking whether RTLD_DEEPBIND is declared... yes [spkg-build] checking whether RTLD_MEMBER is declared... no [spkg-build] checking digit size for Python's longs... no value specified [spkg-build] checking for wchar.h... 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[spkg-build] checking SOABI... cpython-312-x86_64-linux-gnu [spkg-build] checking LDVERSION... $(VERSION)$(ABIFLAGS) [spkg-build] checking for --with-platlibdir... no [spkg-build] checking for --with-wheel-pkg-dir... no [spkg-build] checking whether right shift extends the sign bit... yes [spkg-build] checking for getc_unlocked() and friends... yes [spkg-build] checking for readline... yes [spkg-build] checking how to link readline... readline (CFLAGS: -D_DEFAULT_SOURCE , LIBS: -lreadline ) [spkg-build] checking whether rl_completion_append_character is declared... yes [spkg-build] checking whether rl_completion_suppress_append is declared... yes [spkg-build] checking for rl_pre_input_hook in -lreadline... yes [spkg-build] checking for rl_completion_display_matches_hook in -lreadline... yes [spkg-build] checking for rl_resize_terminal in -lreadline... yes [spkg-build] checking for rl_completion_matches in -lreadline... yes [spkg-build] checking whether rl_catch_signals is declared... yes [spkg-build] checking for append_history in -lreadline... yes [spkg-build] checking for rl_compdisp_func_t... yes [spkg-build] checking for broken nice()... no [spkg-build] checking for broken poll()... no [spkg-build] checking for working tzset()... yes [spkg-build] checking for tv_nsec in struct stat... yes [spkg-build] checking for tv_nsec2 in struct stat... no [spkg-build] checking for curses.h... yes [spkg-build] checking for ncurses.h... yes [spkg-build] checking for ncursesw... yes [spkg-build] checking curses module flags... ncursesw (CFLAGS: -D_DEFAULT_SOURCE , LIBS: -Wl,-rpath-link,/home/akio/sage/local/lib -Wl,-rpath,/home/akio/sage/local/lib -Wl,-rpath-link,/home/akio/sage/local/lib -Wl,-rpath,/home/akio/sage/local/lib -lncursesw -ltinfow ) [spkg-build] checking for panel.h... yes [spkg-build] checking for panelw... yes [spkg-build] checking panel flags... panelw (CFLAGS: -D_DEFAULT_SOURCE , LIBS: -Wl,-rpath-link,/home/akio/sage/local/lib -Wl,-rpath,/home/akio/sage/local/lib -Wl,-rpath-link,/home/akio/sage/local/lib -Wl,-rpath,/home/akio/sage/local/lib -lpanelw ) [spkg-build] checking for term.h... yes [spkg-build] checking whether mvwdelch is an expression... yes [spkg-build] checking whether WINDOW has _flags... yes [spkg-build] checking for curses function is_pad... yes [spkg-build] checking for curses function is_term_resized... yes [spkg-build] checking for curses function resize_term... yes [spkg-build] checking for curses function resizeterm... yes [spkg-build] checking for curses function immedok... yes [spkg-build] checking for curses function syncok... yes [spkg-build] checking for curses function wchgat... yes [spkg-build] checking for curses function filter... yes [spkg-build] checking for curses function has_key... yes [spkg-build] checking for curses function typeahead... yes [spkg-build] checking for curses function use_env... yes [spkg-build] configure: checking for device files [spkg-build] checking for /dev/ptmx... yes [spkg-build] checking for /dev/ptc... no [spkg-build] checking for socklen_t... yes [spkg-build] checking for broken mbstowcs... no [spkg-build] checking for --with-computed-gotos... no value specified [spkg-build] checking whether gcc supports computed gotos... yes [spkg-build] checking for build directories... done [spkg-build] checking for -O2... yes [spkg-build] checking for glibc _FORTIFY_SOURCE/memmove bug... no [spkg-build] checking for gcc ipa-pure-const bug... no [spkg-build] checking for stdatomic.h... yes [spkg-build] checking for builtin __atomic_load_n and __atomic_store_n functions... yes [spkg-build] checking for ensurepip... no [spkg-build] checking if the dirent structure of a d_type field... yes [spkg-build] checking for the Linux getrandom() syscall... yes [spkg-build] checking for the getrandom() function... yes [spkg-build] checking for library containing shm_open... none required [spkg-build] checking for shm_open... yes [spkg-build] checking for shm_unlink... yes [spkg-build] checking for pkg-config... /usr/bin/pkg-config [spkg-build] checking whether compiling and linking against OpenSSL works... yes [spkg-build] checking for --with-openssl-rpath... [spkg-build] checking whether OpenSSL provides required ssl module APIs... yes [spkg-build] checking whether OpenSSL provides required hashlib module APIs... yes [spkg-build] checking for --with-ssl-default-suites... python [spkg-build] checking for --with-builtin-hashlib-hashes... md5,sha1,sha2,sha3,blake2 [spkg-build] checking for libb2... no [spkg-build] checking for --disable-test-modules... yes [spkg-build] checking for stdlib extension module _multiprocessing... yes [spkg-build] checking for stdlib extension module _posixshmem... yes [spkg-build] checking for stdlib extension module fcntl... yes [spkg-build] checking for stdlib extension module mmap... yes [spkg-build] checking for stdlib extension module _socket... yes [spkg-build] checking for stdlib extension module grp... yes [spkg-build] checking for stdlib extension module ossaudiodev... yes [spkg-build] checking for stdlib extension module pwd... yes [spkg-build] checking for stdlib extension module resource... yes [spkg-build] checking for stdlib extension module _scproxy... n/a [spkg-build] checking for stdlib extension module spwd... yes [spkg-build] checking for stdlib extension module syslog... yes [spkg-build] checking for stdlib extension module termios... yes [spkg-build] checking for stdlib extension module pyexpat... yes [spkg-build] checking for stdlib extension module _elementtree... yes [spkg-build] checking for stdlib extension module _md5... yes [spkg-build] checking for stdlib extension module _sha1... yes [spkg-build] checking for stdlib extension module _sha2... yes [spkg-build] checking for stdlib extension module _sha3... yes [spkg-build] checking for stdlib extension module _blake2... yes [spkg-build] checking for stdlib extension module _crypt... yes [spkg-build] checking for stdlib extension module _ctypes... yes [spkg-build] checking for stdlib extension module _curses... yes [spkg-build] checking for stdlib extension module _curses_panel... yes [spkg-build] checking for stdlib extension module _decimal... yes [spkg-build] checking for stdlib extension module _dbm... missing [spkg-build] checking for stdlib extension module _gdbm... missing [spkg-build] checking for stdlib extension module nis... missing [spkg-build] checking for stdlib extension module readline... yes [spkg-build] checking for stdlib extension module _sqlite3... yes [spkg-build] checking for stdlib extension module _tkinter... missing [spkg-build] checking for stdlib extension module _uuid... missing [spkg-build] checking for stdlib extension module zlib... yes [spkg-build] checking for stdlib extension module _bz2... yes [spkg-build] checking for stdlib extension module _lzma... yes [spkg-build] checking for stdlib extension module _ssl... yes [spkg-build] checking for stdlib extension module _hashlib... yes [spkg-build] checking for stdlib extension module _testcapi... yes [spkg-build] checking for stdlib extension module _testclinic... yes [spkg-build] checking for stdlib extension module _testinternalcapi... yes [spkg-build] checking for stdlib extension module _testbuffer... yes [spkg-build] checking for stdlib extension module _testimportmultiple... yes [spkg-build] checking for stdlib extension module _testmultiphase... yes [spkg-build] checking for stdlib extension module xxsubtype... yes [spkg-build] checking for stdlib extension module _xxtestfuzz... yes [spkg-build] checking for stdlib extension module _ctypes_test... yes [spkg-build] checking for stdlib extension module xxlimited... yes [spkg-build] checking for stdlib extension module xxlimited_35... yes [spkg-build] configure: creating ./config.status [spkg-build] config.status: creating Makefile.pre [spkg-build] config.status: creating Misc/python.pc [spkg-build] config.status: creating Misc/python-embed.pc [spkg-build] config.status: creating Misc/python-config.sh [spkg-build] config.status: creating Modules/Setup.bootstrap [spkg-build] config.status: creating Modules/Setup.stdlib [spkg-build] config.status: creating Modules/ld_so_aix [spkg-build] config.status: creating pyconfig.h [spkg-build] configure: WARNING: unrecognized options: --disable-static, --disable-maintainer-mode, --disable-dependency-tracking [spkg-build] configure: creating Modules/Setup.local [spkg-build] configure: creating Makefile [spkg-build] configure: [spkg-build] [spkg-build] If you want a release build with all stable optimizations active (PGO, etc), [spkg-build] please run ./configure --enable-optimizations [spkg-build] [spkg-build] Building python3-3.12.5 [spkg-build] gcc -c -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Wno-unused -g -O2 -std=c11 -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wstrict-prototypes -Werror=implicit-function-declaration -fvisibility=hidden -I./Include/internal -I. -I./Include -I/home/akio/sage/local/include -fPIC -DPy_BUILD_CORE -o Programs/python.o ./Programs/python.c [spkg-build] make[5]: *** read jobs pipe: Bad file descriptor. Stop. [spkg-build] make[5]: *** Waiting for unfinished jobs.... [spkg-build] ********************************************************************************************************************************************************************************************************************************************** [spkg-build] Error building python3-3.12.5 [spkg-build] ********************************************************************************************************************************************************************************************************************************************** ************************************************************************ Error building package python3-3.12.5 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log files /home/akio/sage/logs/pkgs/python3-3.12.5.log and /home/akio/sage/config.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/akio/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/python3-3.12.5 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/akio/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/python3-3.12.5' && '/home/akio/sage/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ real 0m26,743s user 0m15,517s sys 0m11,338s
