On Thu, Apr 24, 2025 at 12:02 PM Aram Dermenjian < aram.dermenjian.m...@gmail.com> wrote:
> Yeah a few times I tried doing make after and there seemed to be *some* > success sometimes. Anyway, my internet is a little more stable so it seemed > to download everything correctly. > > Now I seem to be getting a sagemath_doc_html error (log attached). It > looks like something to do with trying to import libgap? I checked apt to > see what libgap I have and here's what it gave: > libgap-dev/jammy,now 4.11.1-1 amd64 [installed] > libgap7/jammy,now 4.11.1-1 amd64 [installed,automatic] > > But I'm not 100% sure. When I try to run sage, I get the following error > (which seems very similar to the doc error) > > -------------------------------------------------------- > Error in sys.excepthook: > Traceback (most recent call last): > File > "/sage/sd/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/IPython/core/application.py", > line 284, in excepthook > return self.crash_handler(etype, evalue, tb) > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ > File > "/sage/sd/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/IPython/core/crashhandler.py", > line 163, in __call__ > if rptdir is None or not Path.is_dir(rptdir): > ^^^^^^^^^^^^^^^^^^^ > File > "/sage/sd/local/var/lib/sage/venv-python3.12.5/lib/python3.12/pathlib.py", > line 875, in is_dir > return S_ISDIR(self.stat().st_mode) > ^^^^^^^^^ > AttributeError: 'str' object has no attribute 'stat' > > Original exception was: > Traceback (most recent call last): > File "/sage/sd/src/bin/sage-ipython", line 15, in <module> > app.initialize() > File > "/sage/sd/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/traitlets/config/application.py", > line 118, in inner > return method(app, *args, **kwargs) > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ > File > "/sage/sd/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/IPython/terminal/ipapp.py", > line 278, in initialize > self.init_shell() > File "/sage/sd/src/sage/repl/interpreter.py", line 854, in init_shell > self.shell.extension_manager.load_extension(SAGE_EXTENSION) > File > "/sage/sd/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/IPython/core/extensions.py", > line 76, in load_extension > return self._load_extension(module_str) > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ > File > "/sage/sd/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/IPython/core/extensions.py", > line 93, in _load_extension > if self._call_load_ipython_extension(mod): > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ > File > "/sage/sd/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/IPython/core/extensions.py", > line 145, in _call_load_ipython_extension > mod.load_ipython_extension(self.shell) > File "/sage/sd/src/sage/repl/__init__.py", line 6, in > load_ipython_extension > sage.repl.ipython_extension.load_ipython_extension(*args) > File "/sage/sd/src/sage/misc/misc.py", line 1030, in wrapper > result = func(*args, **kwargs) > ^^^^^^^^^^^^^^^^^^^^^ > File "/sage/sd/src/sage/repl/ipython_extension.py", line 747, in > load_ipython_extension > SageCustomizations(shell=ip) > File "/sage/sd/src/sage/repl/ipython_extension.py", line 592, in __init__ > import sage.all # noqa: F401 > ^^^^^^^^^^^^^^^ > File "/sage/sd/src/sage/all.py", line 98, in <module> > from sage.groups.all import * > File "/sage/sd/src/sage/groups/all.py", line 5, in <module> > from sage.groups.matrix_gps.all import * > File "/sage/sd/src/sage/groups/matrix_gps/all.py", line 13, in <module> > import sage.groups.matrix_gps.pickling_overrides > File "/sage/sd/src/sage/groups/matrix_gps/pickling_overrides.py", line > 7, in <module> > from sage.groups.matrix_gps.finitely_generated_gap import > FinitelyGeneratedMatrixGroup_gap > File "/sage/sd/src/sage/groups/matrix_gps/finitely_generated_gap.py", > line 30, in <module> > from sage.groups.matrix_gps.matrix_group_gap import MatrixGroup_gap > File "/sage/sd/src/sage/groups/matrix_gps/matrix_group_gap.py", line 24, > in <module> > from sage.groups.libgap_mixin import GroupMixinLibGAP > File "/sage/sd/src/sage/groups/libgap_mixin.py", line 15, in <module> > from sage.libs.gap.libgap import libgap > ImportError: /sage/sd/src/sage/libs/gap/ > libgap.cpython-312-x86_64-linux-gnu.so: undefined symbol: GAP_CollectBags > Sage needs GAP 4.13 or newer. Assuming you actually built GAP spkg OK, the error might be due to the system-wide installed old version of GAP (and libgap) interfering with the normal operations of Sage interface. One way to debug this is to fire up Sage shell (i.e. ./sage --sh, or ./sage --buildsh) and run ldd /sage/sd/src/sage/libs/gap/libgap.cpython-312-x86_64-linux-gnu.so which will print the full paths to the libraries this Python module is linked to.. I'd uninstall the old system-wide GAP, and see if it helps. Dima > On Thu, 24 Apr 2025 at 18:51, Dima Pasechnik <dimp...@gmail.com> wrote: > >> You can try to restart make after you hit ctrl-C. Sometimes it just works. >> >> > Also, I'm thinking I should create a ticket along the lines of "if >> unable to download xxx, then an error should be thrown instead of just >> hanging and waiting forever", >> >> it might help to trim the list of mirrors in upstream/mirror_list - only >> leave few mirrors geographically nearby. >> >> >> On Wed, Apr 23, 2025 at 12:17 PM Aram Dermenjian < >> aram.dermenjian.m...@gmail.com> wrote: >> >>> This definitely solves the sci-py problem! Thanks. >>> >>> I'm still getting hung up on the 2nd issue though where for some reason >>> matplotlib just won't install. The terminal goes to something like: >>> ``` >>> [sagenb_export-3.3] [spkg-pipinst] Installing collected packages: >>> sagenb_export >>> [sagenb_export-3.3] [spkg-pipinst] changing mode of >>> /sage/sagedev/local/var/lib/sage/venv-python3.12.5/bin/sagenb-export to 755 >>> [sagenb_export-3.3] [spkg-pipinst] Successfully installed >>> sagenb_export-3.3 >>> [sagenb_export-3.3] Deleting build directory >>> /sage/sagedev/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagenb_export-3.3 >>> [sagenb_export-3.3] Finished installing sagenb_export-3.3 >>> ``` >>> (each time something slightly different) and then it just stalls there. >>> (I Left it like that for 4 hours and no change. Then when I ctrl+c to stop >>> the running process matplotlib throws an error. >>> >>> -Aram >>> >>> On Wed, 23 Apr 2025 at 13:25, Eric Gourgoulhon <egourgoul...@gmail.com> >>> wrote: >>> >>>> Hi, >>>> >>>> This line in the scipy log: >>>> [spkg-install] g++: fatal error: Killed signal terminated program >>>> cc1plus >>>> points towards a memory issue. Could you increase the RAM devoted to >>>> WSL2 or decrease the number of processes if you are performing a parallel >>>> build (e.g use make -j4 instead of make -j8) ? >>>> >>>> Eric. >>>> >>>> >>>> Le mercredi 23 avril 2025 à 11:41:37 UTC+2, aram.derme...@gmail.com a >>>> écrit : >>>> >>>>> Hey all, >>>>> >>>>> I'm trying to update to the latest devel version in order to code some >>>>> things up, but I can't seem to get the latest devel version "making" >>>>> properly. Not sure if I'm doing something wrong, so I'm attaching my logs. >>>>> >>>>> - First time, I ran it, I got a scipy error (logs attached) and it >>>>> wouldn't build >>>>> - I tried running `make` again (without doing a `make distclean`) and >>>>> the 2nd time scipy installs correctly, but then the instlaler just hangs >>>>> and doesn't finish. >>>>> -> When I `ctrl+c` to quit, it shows `matplotlib-3.10.1` errors, so >>>>> seems like it's getting stuck in `matplotlib-3.10.1`. (Which I'm attaching >>>>> the log file for) >>>>> -> Analyzying the log file, looks like it can't properly get >>>>> `matplotlib-3.10.1`. Version 10.6 doesn't have it (only has >>>>> `matplotlib-3.8` and the URL it's trying to download from for 10.7 is >>>>> wrong >>>>> (It should be: >>>>> https://github.com/sagemath/sage/releases/download/10.7.beta1/matplotlib-3.10.1.tar.gz >>>>> ) >>>>> >>>>> I tried installing a fresh copy of sagedev (not my forked version) and >>>>> a similar thing happens, but this time it failed when trying to install >>>>> numpy. >>>>> >>>>> Wanted to see what the best way to approach fixing my development >>>>> version is. >>>>> >>>>> Also, I'm thinking I should create a ticket along the lines of "if >>>>> unable to download xxx, then an error should be thrown instead of just >>>>> hanging and waiting forever", but before doing that I want to make sure >>>>> that it is really a problem with the dev version and not a problem on my >>>>> end (as my internet is a little weird here, so it could potentially be my >>>>> internet being weird) >>>>> >>>>> Kindly, >>>>> Aram >>>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "sage-devel" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to sage-devel+unsubscr...@googlegroups.com. >>>> To view this discussion visit >>>> https://groups.google.com/d/msgid/sage-devel/53b4ddd4-6e55-44fa-b6b0-87f9ee66d4f1n%40googlegroups.com >>>> <https://groups.google.com/d/msgid/sage-devel/53b4ddd4-6e55-44fa-b6b0-87f9ee66d4f1n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+unsubscr...@googlegroups.com. >>> To view this discussion visit >>> https://groups.google.com/d/msgid/sage-devel/CAKQMtioC16%2BnE-7775CRffANCTnQHNuS_Mthdmz6AX3UC6yhig%40mail.gmail.com >>> <https://groups.google.com/d/msgid/sage-devel/CAKQMtioC16%2BnE-7775CRffANCTnQHNuS_Mthdmz6AX3UC6yhig%40mail.gmail.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-devel" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-devel+unsubscr...@googlegroups.com. >> To view this discussion visit >> https://groups.google.com/d/msgid/sage-devel/CAAWYfq2V3uRWunZnwvm9%2BsDeXgFt13rZdtB0XAdOs-Y3YHiHGA%40mail.gmail.com >> <https://groups.google.com/d/msgid/sage-devel/CAAWYfq2V3uRWunZnwvm9%2BsDeXgFt13rZdtB0XAdOs-Y3YHiHGA%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion visit > https://groups.google.com/d/msgid/sage-devel/CAKQMtiqWSgzPupitB37TxCiGN5hfK0gwPhK6OH_UyxRJQtc4eA%40mail.gmail.com > <https://groups.google.com/d/msgid/sage-devel/CAKQMtiqWSgzPupitB37TxCiGN5hfK0gwPhK6OH_UyxRJQtc4eA%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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