With conda, you can use sage on macOS 10.13. We supply our own linker built from Apple's sources.
Isuru On Mon, Jan 1, 2024 at 5:08 AM Dima Pasechnik <dimp...@gmail.com> wrote: > > > On 31 December 2023 23:20:28 WET, Jing Guo <dev.g...@gmail.com> wrote: > >It’s fine, I’m not building Sage on Mac anyway. > > You're doing a complicated enough thing to put you into "building Sage" > ballpark. > > > > >I used homebrew in the past but it doesn’t support old macOS versions any > more. Also I find MacPorts to be easier to manage and keep the versions > consistent. > > Oops, sorry, only now I realised how old macOS 10.13 actually is (it's > well past EOL). I think you are seriously out of luck here, due to > outdated Apple's tools for this platform. > > > > > >Jing > >2024年1月1日 +0100 00:16 Dima Pasechnik <dimp...@gmail.com>，写道： > >> > >> > >> On 31 December 2023 23:05:42 WET, Jing Guo <dev.g...@gmail.com> wrote: > >> > Thank you for all your helps. I asked in that GitHub repo and here is > the > >> > issue: https://github.com/3-manifolds/Sage_macOS/issues/62 > >> > > >> > The reason it does not work is probably caused by my macOS being too > old > >> > (10.13.6), so `ld` does not recognize `-platform_version` flag. > MacPorts > >> > does not seem to support `ld` as well. I guess I will try to find > other > >> > workarounds. > >> > >> Building Sage with Homebrew is well-supported. > >> With MacPorts, no, noone I think managed to build Sage from source > using a nontrivial number of MacPorts packages. > >> So it's probably a MacPorts problem too. > >> > >> > >> > >> > >> > >> > > >> > 在2023年12月28日星期四 UTC+1 08:32:34<Vincent Delecroix> 写道： > >> > > >> > > Dear Jing, > >> > > > >> > > Not being able to use Cython from this sage app is indeed > problematic. > >> > > However as Dima said this is more a problem of the app rather than a > >> > > problem with sage itself. You would better open an issue at > >> > > https://github.com/3-manifolds/Sage_macOS. If you do, please post > the > >> > > link of the issue in this thread. > >> > > > >> > > Best > >> > > Vincent > >> > > > >> > > On Wed, 27 Dec 2023 at 13:43, Dima Pasechnik <dim...@gmail.com> > wrote: > >> > > > > >> > > > On Wed, Dec 27, 2023 at 12:23 PM Jing Guo <dev....@gmail.com> > wrote: > >> > > > > > >> > > > > I just did. The following is the new error. > >> > > > > > >> > > > > ➜ local-hom-count git:(main) ✗ sage > >> > > > > > ┌────────────────────────────────────────────────────────────────────┐ > >> > > > > │ SageMath version 10.2, Release Date: 2023-12-03 │ > >> > > > > │ Using Python 3.11.1. Type "help()" for help. │ > >> > > > > > └────────────────────────────────────────────────────────────────────┘ > >> > > > > sage: load("helper_functions.pyx") > >> > > > > Compiling ./helper_functions.pyx... > >> > > > > > >> > > > --------------------------------------------------------------------------- > >> > > > > DistutilsExecError Traceback (most recent call last) > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/unixccompiler.py:266, > >> > > in UnixCCompiler.link(self, target_desc, objects, output_filename, > >> > > output_dir, libraries, library_dirs, runtime_library_dirs, > export_symbols, > >> > > debug, extra_preargs, extra_postargs, build_temp, target_lang) > >> > > > > 264 linker = compiler_fixup(linker, ld_args) > >> > > > > --> 266 self.spawn(linker + ld_args) > >> > > > > 267 except DistutilsExecError as msg: > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/ccompiler.py:1041, > >> > > in CCompiler.spawn(self, cmd, **kwargs) > >> > > > > 1040 def spawn(self, cmd, **kwargs): > >> > > > > -> 1041 spawn(cmd, dry_run=self.dry_run, **kwargs) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/spawn.py:70, > >> > > in spawn(cmd, search_path, verbose, dry_run, env) > >> > > > > 69 cmd = cmd[0] > >> > > > > ---> 70 raise DistutilsExecError( > >> > > > > 71 "command {!r} failed with exit code {}".format(cmd, exitcode) > >> > > > > 72 ) > >> > > > > > >> > > > > DistutilsExecError: command '/usr/bin/gcc' failed with exit > code 1 > >> > > > > >> > > > Please check > >> > > https://doc.sagemath.org/html/en/installation/index.html#macos > >> > > > and note that you re doing development. I.e. > >> > > > you are trying to do Sage development in an unsupported > environment. > >> > > > The app you are using does not come with all the tools needed to > >> > > > create Python extensions from Cython (this needs Apple software, > which > >> > > > one cannot just bundle for copyright reasons). > >> > > > > >> > > > Having said that, your errors probably indicate that you have an > >> > > > outdated XCode/command line tools installed. But I don't know > whether > >> > > > this can be made to work at all, or you really need a different > >> > > > install of Sage for your tasks. > >> > > > > >> > > > > >> > > > > >> > > > > >> > > > > > >> > > > > During handling of the above exception, another exception > occurred: > >> > > > > > >> > > > > LinkError Traceback (most recent call last) > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/misc/cython.py:454, > >> > > in cython(filename, verbose, compile_message, use_cache, > >> > > create_local_c_file, annotate, sage_namespace, create_local_so_file) > >> > > > > 453 with redirection(2, errfile, close=False): > >> > > > > --> 454 dist.run_command("build") > >> > > > > 455 finally: > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/dist.py:989, > >> > > in Distribution.run_command(self, command) > >> > > > > 986 # Postpone defaults until all explicit configuration is > considered > >> > > > > 987 # (setup() args, config files, command line and plugins) > >> > > > > --> 989 super().run_command(command) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/dist.py:988, > >> > > in Distribution.run_command(self, command) > >> > > > > 987 cmd_obj.ensure_finalized() > >> > > > > --> 988 cmd_obj.run() > >> > > > > 989 self.have_run[command] = 1 > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build.py:131, > >> > > in build.run(self) > >> > > > > 130 for cmd_name in self.get_sub_commands(): > >> > > > > --> 131 self.run_command(cmd_name) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:318, > >> > > in Command.run_command(self, command) > >> > > > > 314 """Run some other command: uses the 'run_command()' method > of > >> > > > > 315 Distribution, which creates and finalizes the command > object if > >> > > > > 316 necessary and then invokes its 'run()' method. > >> > > > > 317 """ > >> > > > > --> 318 self.distribution.run_command(command) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/dist.py:989, > >> > > in Distribution.run_command(self, command) > >> > > > > 986 # Postpone defaults until all explicit configuration is > considered > >> > > > > 987 # (setup() args, config files, command line and plugins) > >> > > > > --> 989 super().run_command(command) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/dist.py:988, > >> > > in Distribution.run_command(self, command) > >> > > > > 987 cmd_obj.ensure_finalized() > >> > > > > --> 988 cmd_obj.run() > >> > > > > 989 self.have_run[command] = 1 > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/command/build_ext.py:88, > >> > > in build_ext.run(self) > >> > > > > 87 old_inplace, self.inplace = self.inplace, 0 > >> > > > > ---> 88 _build_ext.run(self) > >> > > > > 89 self.inplace = old_inplace > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py:345, > >> > > in build_ext.run(self) > >> > > > > 344 # Now actually compile and link everything. > >> > > > > --> 345 self.build_extensions() > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py:467, > >> > > in build_ext.build_extensions(self) > >> > > > > 466 else: > >> > > > > --> 467 self._build_extensions_serial() > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py:493, > >> > > in build_ext._build_extensions_serial(self) > >> > > > > 492 with self._filter_build_errors(ext): > >> > > > > --> 493 self.build_extension(ext) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/command/build_ext.py:249, > >> > > in build_ext.build_extension(self, ext) > >> > > > > 248 self.compiler = self.shlib_compiler > >> > > > > --> 249 _build_ext.build_extension(self, ext) > >> > > > > 250 if ext._needs_stub: > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/Cython/Distutils/build_ext.py:135, > >> > > in build_ext.build_extension(self, ext) > >> > > > > 134 ext.sources = new_ext.sources > >> > > > > --> 135 super(build_ext, self).build_extension(ext) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py:572, > >> > > in build_ext.build_extension(self, ext) > >> > > > > 570 language = ext.language or > self.compiler.detect_language(sources) > >> > > > > --> 572 self.compiler.link_shared_object( > >> > > > > 573 objects, > >> > > > > 574 ext_path, > >> > > > > 575 libraries=self.get_libraries(ext), > >> > > > > 576 library_dirs=ext.library_dirs, > >> > > > > 577 runtime_library_dirs=ext.runtime_library_dirs, > >> > > > > 578 extra_postargs=extra_args, > >> > > > > 579 export_symbols=self.get_export_symbols(ext), > >> > > > > 580 debug=self.debug, > >> > > > > 581 build_temp=self.build_temp, > >> > > > > 582 target_lang=language, > >> > > > > 583 ) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/ccompiler.py:752, > >> > > in CCompiler.link_shared_object(self, objects, output_filename, > output_dir, > >> > > libraries, library_dirs, runtime_library_dirs, export_symbols, > debug, > >> > > extra_preargs, extra_postargs, build_temp, target_lang) > >> > > > > 737 def link_shared_object( > >> > > > > 738 self, > >> > > > > 739 objects, > >> > > > > (...) > >> > > > > 750 target_lang=None, > >> > > > > 751 ): > >> > > > > --> 752 self.link( > >> > > > > 753 CCompiler.SHARED_OBJECT, > >> > > > > 754 objects, > >> > > > > 755 output_filename, > >> > > > > 756 output_dir, > >> > > > > 757 libraries, > >> > > > > 758 library_dirs, > >> > > > > 759 runtime_library_dirs, > >> > > > > 760 export_symbols, > >> > > > > 761 debug, > >> > > > > 762 extra_preargs, > >> > > > > 763 extra_postargs, > >> > > > > 764 build_temp, > >> > > > > 765 target_lang, > >> > > > > 766 ) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/unixccompiler.py:268, > >> > > in UnixCCompiler.link(self, target_desc, objects, output_filename, > >> > > output_dir, libraries, library_dirs, runtime_library_dirs, > export_symbols, > >> > > debug, extra_preargs, extra_postargs, build_temp, target_lang) > >> > > > > 267 except DistutilsExecError as msg: > >> > > > > --> 268 raise LinkError(msg) > >> > > > > 269 else: > >> > > > > > >> > > > > LinkError: command '/usr/bin/gcc' failed with exit code 1 > >> > > > > > >> > > > > During handling of the above exception, another exception > occurred: > >> > > > > > >> > > > > RuntimeError Traceback (most recent call last) > >> > > > > Cell In [1], line 1 > >> > > > > ----> 1 load("helper_functions.pyx") > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/misc/persist.pyx:175, > >> > > in sage.misc.persist.load > (build/cythonized/sage/misc/persist.c:4520)() > >> > > > > 173 > >> > > > > 174 if sage.repl.load.is_loadable_filename(filename): > >> > > > > --> 175 sage.repl.load.load(filename, globals()) > >> > > > > 176 return > >> > > > > 177 > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/repl/load.py:277, > >> > > in load(filename, globals, attach) > >> > > > > 275 if attach: > >> > > > > 276 add_attached_file(fpath) > >> > > > > --> 277 exec(load_cython(fpath), globals) > >> > > > > 278 elif ext == '.f' or ext == '.f90': > >> > > > > 279 from sage.misc.inline_fortran import fortran > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/repl/load.py:68, > >> > > in load_cython(name) > >> > > > > 55 """ > >> > > > > 56 Helper function to load a Cython file. > >> > > > > 57 > >> > > > > (...) > >> > > > > 65 module. > >> > > > > 66 """ > >> > > > > 67 from sage.misc.cython import cython > >> > > > > ---> 68 mod, dir = cython(name, compile_message=True, > use_cache=True) > >> > > > > 69 import sys > >> > > > > 70 sys.path.append(dir) > >> > > > > > >> > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/misc/cython.py:460, > >> > > in cython(filename, verbose, compile_message, use_cache, > >> > > create_local_c_file, annotate, sage_namespace, create_local_so_file) > >> > > > > 458 except Exception as msg: > >> > > > > 459 msg = str(msg) + "\n" + distutils_messages > >> > > > > --> 460 raise RuntimeError(msg.strip()) > >> > > > > 462 if verbose >= 0: > >> > > > > 463 sys.stderr.write(distutils_messages) > >> > > > > > >> > > > > RuntimeError: command '/usr/bin/gcc' failed with exit code 1 > >> > > > > ld: unknown option: -platform_version > >> > > > > clang: error: linker command failed with exit code 1 (use -v to > see > >> > > invocation) > >> > > > > > >> > > > > 在2023年12月27日星期三 UTC+1 10:39:25<Dima Pasechnik> 写道： > >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > On 27 December 2023 01:45:58 WET, Jing Guo <dev....@gmail.com> > wrote: > >> > > > > > > I downloaded from here > >> > > https://github.com/3-manifolds/Sage_macOS/releases > >> > > > > > > > >> > > > > > > I was not and am not building Sage on Mac. To clarify, I’m > simply > >> > > “developing” this algorithm locally, though with the intention of > >> > > submitting it to Sage source code. > >> > > > > > > >> > > > > > It's most probably a bug (or a feature) of this specific app. > >> > > > > > > >> > > > > > It could be that compilers from MacPorts interfere here. > >> > > > > > Try temporarily moving MacPorts away or uninstall it. > >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > > >> > > > > > > Jing > >> > > > > > > 2023年12月27日 +0100 02:44 Dima Pasechnik <dim...@gmail.com > >，写道： > >> > > > > > > > > >> > > > > > > > > >> > > > > > > > On 27 December 2023 01:25:30 WET, Jing Guo < > dev....@gmail.com> > >> > > wrote: > >> > > > > > > > > Sorry for the confusion. I used Sage downloaded from > the website. > >> > > > > > > > > >> > > > > > > > it's not clear what you mean. > >> > > > > > > > We don't distribute Sage binaries, you need to build them. > >> > > > > > > > Please provide more details. > >> > > > > > > > > >> > > > > > > > > > >> > > > > > > > > Gcc was installed with MacPorts. > >> > > > > > > > > >> > > > > > > > gcc (gcc.gnu.org, not Apple's "gcc") > >> > > > > > > > cannot be used to build Sage on macOS. > >> > > > > > > > > >> > > > > > > > > >> > > > > > > > > > >> > > > > > > > > Jing > >> > > > > > > > > 2023年12月27日 +0100 01:54 Dima Pasechnik < > dim...@gmail.com>，写道： > >> > > > > > > > > > it seems you have gcc in /opt/local - what is it? > >> > > > > > > > > > Not very usual. Normally speaking gcc on macOS is > Apple's > >> > > clang. How have you built (?) Sage? > >> > > > > > > > > > > >> > > > > > > > > > > >> > > > > > > > > > > >> > > > > > > > > > > On 26 December 2023 14:52:23 WET, Jing Guo < > >> > > dev....@gmail.com> wrote: > >> > > > > > > > > > > > Dear all, > >> > > > > > > > > > > > > >> > > > > > > > > > > > I have implemented an algorithm related to graph > >> > > homomorphism counting, and recently I am thinking about improving > its > >> > > performance, so I think of writing some of the modules/codes in > Cython. > >> > > > > > > > > > > > > >> > > > > > > > > > > > For instance, I wrote helper functions in > >> > > `helper_functions.pyx`, which can be imported sucessfully in Python > 3, via > >> > > `from helper_functions import *`. > >> > > > > > > > > > > > > >> > > > > > > > > > > > However, when I run the above command in Sage > notebook or > >> > > Sage, the output reads > >> > > > > > > > > > > > > >> > > > > > > > > > > > sage: import helper_functions > >> > > > > > > > > > > > > >> > > > --------------------------------------------------------------------------- > >> > > > > > > > > > > > ModuleNotFoundError Traceback (most recent call > last) > >> > > > > > > > > > > > Cell In [1], line 1 > >> > > > > > > > > > > > ----> 1 import helper_functions > >> > > > > > > > > > > > > >> > > > > > > > > > > > ModuleNotFoundError: No module named > 'helper_functions' > >> > > > > > > > > > > > > >> > > > > > > > > > > > When I try to run `load("helper_functions.pyx")`, > it will > >> > > output a long line of errors (see end of the post). > >> > > > > > > > > > > > > >> > > > > > > > > > > > I searched online for relevant keywords but > couldn't find > >> > > good solutions to these problems. I am on macOS 10.13.6 > >> > > > > > > > > > > > > >> > > > > > > > > > > > Thank you for your time! > >> > > > > > > > > > > > > >> > > > > > > > > > > > Jing > >> > > > > > > > > > > > > >> > > > > > > > > > > > > >> > > > > > > > > > > > sage: load("helper_functions.pyx") > >> > > > > > > > > > > > Compiling ./helper_functions.pyx... > >> > > > > > > > > > > > > >> > > > --------------------------------------------------------------------------- > >> > > > > > > > > > > > DistutilsExecError Traceback (most recent call > last) > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/unixccompiler.py:266, > >> > > in UnixCCompiler.link(self, target_desc, objects, output_filename, > >> > > output_dir, libraries, library_dirs, runtime_library_dirs, > export_symbols, > >> > > debug, extra_preargs, extra_postargs, build_temp, target_lang) > >> > > > > > > > > > > > 264 linker = compiler_fixup(linker, ld_args) > >> > > > > > > > > > > > --> 266 self.spawn(linker + ld_args) > >> > > > > > > > > > > > 267 except DistutilsExecError as msg: > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/ccompiler.py:1041, > >> > > in CCompiler.spawn(self, cmd, **kwargs) > >> > > > > > > > > > > > 1040 def spawn(self, cmd, **kwargs): > >> > > > > > > > > > > > -> 1041 spawn(cmd, dry_run=self.dry_run, **kwargs) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/spawn.py:70, > >> > > in spawn(cmd, search_path, verbose, dry_run, env) > >> > > > > > > > > > > > 69 cmd = cmd[0] > >> > > > > > > > > > > > ---> 70 raise DistutilsExecError( > >> > > > > > > > > > > > 71 "command {!r} failed with exit code > {}".format(cmd, > >> > > exitcode) > >> > > > > > > > > > > > 72 ) > >> > > > > > > > > > > > > >> > > > > > > > > > > > DistutilsExecError: command '/opt/local/bin/gcc' > failed > >> > > with exit code 1 > >> > > > > > > > > > > > > >> > > > > > > > > > > > During handling of the above exception, another > exception > >> > > occurred: > >> > > > > > > > > > > > > >> > > > > > > > > > > > LinkError Traceback (most recent call last) > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/misc/cython.py:454, > >> > > in cython(filename, verbose, compile_message, use_cache, > >> > > create_local_c_file, annotate, sage_namespace, create_local_so_file) > >> > > > > > > > > > > > 453 with redirection(2, errfile, close=False): > >> > > > > > > > > > > > --> 454 dist.run_command("build") > >> > > > > > > > > > > > 455 finally: > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/dist.py:989, > >> > > in Distribution.run_command(self, command) > >> > > > > > > > > > > > 986 # Postpone defaults until all explicit > configuration > >> > > is considered > >> > > > > > > > > > > > 987 # (setup() args, config files, command line > and > >> > > plugins) > >> > > > > > > > > > > > --> 989 super().run_command(command) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/dist.py:988, > >> > > in Distribution.run_command(self, command) > >> > > > > > > > > > > > 987 cmd_obj.ensure_finalized() > >> > > > > > > > > > > > --> 988 cmd_obj.run() > >> > > > > > > > > > > > 989 self.have_run[command] = 1 > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build.py:131, > >> > > in build.run(self) > >> > > > > > > > > > > > 130 for cmd_name in self.get_sub_commands(): > >> > > > > > > > > > > > --> 131 self.run_command(cmd_name) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:318, > >> > > in Command.run_command(self, command) > >> > > > > > > > > > > > 314 """Run some other command: uses the > 'run_command()' > >> > > method of > >> > > > > > > > > > > > 315 Distribution, which creates and finalizes the > command > >> > > object if > >> > > > > > > > > > > > 316 necessary and then invokes its 'run()' method. > >> > > > > > > > > > > > 317 """ > >> > > > > > > > > > > > --> 318 self.distribution.run_command(command) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/dist.py:989, > >> > > in Distribution.run_command(self, command) > >> > > > > > > > > > > > 986 # Postpone defaults until all explicit > configuration > >> > > is considered > >> > > > > > > > > > > > 987 # (setup() args, config files, command line > and > >> > > plugins) > >> > > > > > > > > > > > --> 989 super().run_command(command) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/dist.py:988, > >> > > in Distribution.run_command(self, command) > >> > > > > > > > > > > > 987 cmd_obj.ensure_finalized() > >> > > > > > > > > > > > --> 988 cmd_obj.run() > >> > > > > > > > > > > > 989 self.have_run[command] = 1 > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/command/build_ext.py:88, > >> > > in build_ext.run(self) > >> > > > > > > > > > > > 87 old_inplace, self.inplace = self.inplace, 0 > >> > > > > > > > > > > > ---> 88 _build_ext.run(self) > >> > > > > > > > > > > > 89 self.inplace = old_inplace > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py:345, > >> > > in build_ext.run(self) > >> > > > > > > > > > > > 344 # Now actually compile and link everything. > >> > > > > > > > > > > > --> 345 self.build_extensions() > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py:467, > >> > > in build_ext.build_extensions(self) > >> > > > > > > > > > > > 466 else: > >> > > > > > > > > > > > --> 467 self._build_extensions_serial() > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py:493, > >> > > in build_ext._build_extensions_serial(self) > >> > > > > > > > > > > > 492 with self._filter_build_errors(ext): > >> > > > > > > > > > > > --> 493 self.build_extension(ext) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/command/build_ext.py:249, > >> > > in build_ext.build_extension(self, ext) > >> > > > > > > > > > > > 248 self.compiler = self.shlib_compiler > >> > > > > > > > > > > > --> 249 _build_ext.build_extension(self, ext) > >> > > > > > > > > > > > 250 if ext._needs_stub: > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/Cython/Distutils/build_ext.py:135, > >> > > in build_ext.build_extension(self, ext) > >> > > > > > > > > > > > 134 ext.sources = new_ext.sources > >> > > > > > > > > > > > --> 135 super(build_ext, > self).build_extension(ext) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py:572, > >> > > in build_ext.build_extension(self, ext) > >> > > > > > > > > > > > 570 language = ext.language or > >> > > self.compiler.detect_language(sources) > >> > > > > > > > > > > > --> 572 self.compiler.link_shared_object( > >> > > > > > > > > > > > 573 objects, > >> > > > > > > > > > > > 574 ext_path, > >> > > > > > > > > > > > 575 libraries=self.get_libraries(ext), > >> > > > > > > > > > > > 576 library_dirs=ext.library_dirs, > >> > > > > > > > > > > > 577 runtime_library_dirs=ext.runtime_library_dirs, > >> > > > > > > > > > > > 578 extra_postargs=extra_args, > >> > > > > > > > > > > > 579 export_symbols=self.get_export_symbols(ext), > >> > > > > > > > > > > > 580 debug=self.debug, > >> > > > > > > > > > > > 581 build_temp=self.build_temp, > >> > > > > > > > > > > > 582 target_lang=language, > >> > > > > > > > > > > > 583 ) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/ccompiler.py:752, > >> > > in CCompiler.link_shared_object(self, objects, output_filename, > output_dir, > >> > > libraries, library_dirs, runtime_library_dirs, export_symbols, > debug, > >> > > extra_preargs, extra_postargs, build_temp, target_lang) > >> > > > > > > > > > > > 737 def link_shared_object( > >> > > > > > > > > > > > 738 self, > >> > > > > > > > > > > > 739 objects, > >> > > > > > > > > > > > (...) > >> > > > > > > > > > > > 750 target_lang=None, > >> > > > > > > > > > > > 751 ): > >> > > > > > > > > > > > --> 752 self.link( > >> > > > > > > > > > > > 753 CCompiler.SHARED_OBJECT, > >> > > > > > > > > > > > 754 objects, > >> > > > > > > > > > > > 755 output_filename, > >> > > > > > > > > > > > 756 output_dir, > >> > > > > > > > > > > > 757 libraries, > >> > > > > > > > > > > > 758 library_dirs, > >> > > > > > > > > > > > 759 runtime_library_dirs, > >> > > > > > > > > > > > 760 export_symbols, > >> > > > > > > > > > > > 761 debug, > >> > > > > > > > > > > > 762 extra_preargs, > >> > > > > > > > > > > > 763 extra_postargs, > >> > > > > > > > > > > > 764 build_temp, > >> > > > > > > > > > > > 765 target_lang, > >> > > > > > > > > > > > 766 ) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/setuptools/_distutils/unixccompiler.py:268, > >> > > in UnixCCompiler.link(self, target_desc, objects, output_filename, > >> > > output_dir, libraries, library_dirs, runtime_library_dirs, > export_symbols, > >> > > debug, extra_preargs, extra_postargs, build_temp, target_lang) > >> > > > > > > > > > > > 267 except DistutilsExecError as msg: > >> > > > > > > > > > > > --> 268 raise LinkError(msg) > >> > > > > > > > > > > > 269 else: > >> > > > > > > > > > > > > >> > > > > > > > > > > > LinkError: command '/opt/local/bin/gcc' failed > with exit > >> > > code 1 > >> > > > > > > > > > > > > >> > > > > > > > > > > > During handling of the above exception, another > exception > >> > > occurred: > >> > > > > > > > > > > > > >> > > > > > > > > > > > RuntimeError Traceback (most recent call last) > >> > > > > > > > > > > > Cell In [2], line 1 > >> > > > > > > > > > > > ----> 1 load("helper_functions.pyx") > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/misc/persist.pyx:175, > >> > > in sage.misc.persist.load > (build/cythonized/sage/misc/persist.c:4520)() > >> > > > > > > > > > > > 173 > >> > > > > > > > > > > > 174 if > sage.repl.load.is_loadable_filename(filename): > >> > > > > > > > > > > > --> 175 sage.repl.load.load(filename, globals()) > >> > > > > > > > > > > > 176 return > >> > > > > > > > > > > > 177 > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/repl/load.py:277, > >> > > in load(filename, globals, attach) > >> > > > > > > > > > > > 275 if attach: > >> > > > > > > > > > > > 276 add_attached_file(fpath) > >> > > > > > > > > > > > --> 277 exec(load_cython(fpath), globals) > >> > > > > > > > > > > > 278 elif ext == '.f' or ext == '.f90': > >> > > > > > > > > > > > 279 from sage.misc.inline_fortran import fortran > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/repl/load.py:68, > >> > > in load_cython(name) > >> > > > > > > > > > > > 55 """ > >> > > > > > > > > > > > 56 Helper function to load a Cython file. > >> > > > > > > > > > > > 57 > >> > > > > > > > > > > > (...) > >> > > > > > > > > > > > 65 module. > >> > > > > > > > > > > > 66 """ > >> > > > > > > > > > > > 67 from sage.misc.cython import cython > >> > > > > > > > > > > > ---> 68 mod, dir = cython(name, > compile_message=True, > >> > > use_cache=True) > >> > > > > > > > > > > > 69 import sys > >> > > > > > > > > > > > 70 sys.path.append(dir) > >> > > > > > > > > > > > > >> > > > > > > > > > > > File > >> > > > /private/var/tmp/sage-10.2-current/local/var/lib/sage/venv-python3.11.1/lib/python3.11/site-packages/sage/misc/cython.py:460, > >> > > in cython(filename, verbose, compile_message, use_cache, > >> > > create_local_c_file, annotate, sage_namespace, create_local_so_file) > >> > > > > > > > > > > > 458 except Exception as msg: > >> > > > > > > > > > > > 459 msg = str(msg) + "\n" + distutils_messages > >> > > > > > > > > > > > --> 460 raise RuntimeError(msg.strip()) > >> > > > > > > > > > > > 462 if verbose >= 0: > >> > > > > > > > > > > > 463 sys.stderr.write(distutils_messages) > >> > > > > > > > > > > > > >> > > > > > > > > > > > RuntimeError: command '/opt/local/bin/gcc' failed > with > >> > > exit code 1 > >> > > > > > > > > > > > ld: unknown option: -platform_version > >> > > > > > > > > > > > collect2: error: ld returned 1 exit status > >> > > > > > > > > > -- > >> > > > > > > > > > You received this message because you are subscribed > to a > >> > > topic in the Google Groups "sage-devel" group. > >> > > > > > > > > > To unsubscribe from this topic, visit > >> > > > https://groups.google.com/d/topic/sage-devel/7jq8wyLfvrU/unsubscribe. > >> > > > > > > > > > To unsubscribe from this group and all its topics, > send an > >> > > email to sage-devel+...@googlegroups.com. > >> > > > > > > > > > To view this discussion on the web visit > >> > > > https://groups.google.com/d/msgid/sage-devel/829275C4-EB26-4203-904B-77D8A75201B5%40gmail.com > >> > > . > >> > > > > > > > > > >> > > > > > > > > >> > > > > > > > -- > >> > > > > > > > You received this message because you are subscribed to a > topic in > >> > > the Google Groups "sage-devel" group. > >> > > > > > > > To unsubscribe from this topic, visit > >> > > > https://groups.google.com/d/topic/sage-devel/7jq8wyLfvrU/unsubscribe. > >> > > > > > > > To unsubscribe from this group and all its topics, send > an email > >> > > to sage-devel+...@googlegroups.com. > >> > > > > > > > To view this discussion on the web visit > >> > > > https://groups.google.com/d/msgid/sage-devel/654DF95C-F50F-42DC-8A98-66E58B427750%40gmail.com > >> > > . > >> > > > > > > > >> > > > > > >> > > > > -- > >> > > > > You received this message because you are subscribed to the > Google > >> > > Groups "sage-devel" group. > >> > > > > To unsubscribe from this group and stop receiving emails from > it, send > >> > > an email to sage-devel+...@googlegroups.com. > >> > > > > To view this discussion on the web visit > >> > > > https://groups.google.com/d/msgid/sage-devel/7e37ce49-be9c-4a24-a130-f9fbfb21a781n%40googlegroups.com > >> > > . > >> > > > > >> > > > -- > >> > > > You received this message because you are subscribed to the Google > >> > > Groups "sage-devel" group. > >> > > > To unsubscribe from this group and stop receiving emails from it, > send > >> > > an email to sage-devel+...@googlegroups.com. > >> > > > To view this discussion on the web visit > >> > > > https://groups.google.com/d/msgid/sage-devel/CAAWYfq0K7Ye7pEwvZN5JJddJvMcQc6LXDoOFKcHcGjwe4wOHHA%40mail.gmail.com > >> > > . > >> > > > >> > > >> > >> -- > >> You received this message because you are subscribed to a topic in the > Google Groups "sage-devel" group. > >> To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/7jq8wyLfvrU/unsubscribe. > >> To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > >> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/242E160C-04C1-42A7-A4E6-3D30FF3AB7A1%40gmail.com > . > > > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > 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