Just ignore the ones that persist and continue with "make build"
On Tuesday, January 3, 2023 at 4:56:38 PM UTC-8 smh...@gmail.com wrote:
> I got the following instructions after running "./configure"
>
>
> --------------------------------------------------------------------------------------------------------
> notice: the following SPKGs did not find equivalent system packages:
>
> appdirs arb boost_cropped brial bzip2 cddlib cliquer cmake curl
> distlib ecl eclib ecm fflas_ffpack filelock flint flintqs fplll freetype gc
> gengetopt gf2x gfan giac givaro glpk gmp gsl iml lcalc libatomic_ops
> libbraiding libffi libgd libhomfly liblzma libpng linbox lrcalc m4ri m4rie
> meson mpc mpfi mpfr nauty ncurses ninja_build ntl openblas openssl palp
> pari pari_galdata pari_seadata_small pcre pkgconf planarity ppl primecount
> primesieve python3 qhull readline rw singular sqlite suitesparse symmetrica
> sympow tachyon toml tox virtualenv zeromq zlib 4ti2 cbc coxeter3 _develop
> ffmpeg gp2c graphviz igraph imagemagick isl libgraphviz libnauty
> libsemigroups libxml2 lrslib pandoc pari_elldata pari_galpol pari_nftables
> pari_seadata pdf2svg perl_cpan_polymake_prereq perl_mongodb
> perl_term_readline_gnu polymake r _recommended texlive
>
> checking for the package system in use... debian
> configure:
>
> hint: installing the following system packages, if not
> already present, is recommended and may avoid having to
> build them (though some may have to be built anyway):
>
> $ sudo apt-get update
> $ sudo apt-get install libflint-arb-dev libboost-dev libbrial-dev
> libbrial-groebner-dev libbz2-dev bzip2 libcdd-dev libcdd-tools cliquer
> libcliquer-dev cmake curl libcurl4-openssl-dev ecl libec-dev eclib-tools
> gmp-ecm libecm-dev fflas-ffpack libflint-dev flintqs libfplll-dev
> libfreetype6-dev libgc-dev gengetopt libgf2x-dev gfan libgiac-dev xcas
> libgivaro-dev glpk-utils libglpk-dev libgmp-dev libgsl-dev libiml-dev lcalc
> liblfunction-dev libatomic-ops-dev libbraiding-dev libffi-dev libgd-dev
> libhomfly-dev xz-utils liblzma-dev liblinbox-dev liblrcalc-dev libm4ri-dev
> libm4rie-dev meson libmpc-dev libmpfi-dev libmpfr-dev nauty libncurses5-dev
> ninja-build libntl-dev libopenblas-dev openssl libssl-dev palp pari-gp2c
> libpari-dev pari-doc pari-elldata pari-galdata pari-galpol pari-seadata
> libpcre3-dev pkg-config libplanarity-dev planarity libppl-dev ppl-dev
> libprimesieve-dev python3 libpython3-dev python3-distutils python3-venv
> libqhull-dev libreadline-dev librw-dev singular singular-doc
> libsingular4-dev libsqlite3-dev sqlite3 libsuitesparse-dev
> libsymmetrica2-dev sympow tachyon tox libzmq3-dev libz-dev
>
> configure:
>
> hint: installing the following system packages, if not
> already present, may provide additional optional features:
>
> $ sudo apt-get update
> $ sudo apt-get install 4ti2 coinor-cbc coinor-libcbc-dev gpgconf
> openssh-client ffmpeg pari-gp2c graphviz libigraph-dev imagemagick
> libisl-dev libgraphviz-dev libnauty-dev libxml2-dev lrslib pandoc pdf2svg
> libxml-libxslt-perl libxml-writer-perl libxml2-dev libperl-dev
> libfile-slurp-perl libjson-perl libsvg-perl libterm-readkey-perl
> libterm-readline-gnu-perl libmongodb-perl libterm-readline-gnu-perl
> polymake libpolymake-dev r-base-dev r-cran-lattice default-jdk
> libavdevice-dev texlive-latex-extra texlive-xetex latexmk dvipng tex-gyre
> texlive-fonts-recommended texlive-lang-cyrillic texlive-lang-english
> texlive-lang-european texlive-lang-french texlive-lang-german
> texlive-lang-italian texlive-lang-japanese texlive-lang-polish
> texlive-lang-portuguese texlive-lang-spanish
>
> configure:
>
> hint: After installation, re-run configure using:
>
> $ ./config.status --recheck && ./config.status
>
> --------------------------------------------------------------------------------------------------------
>
> So I did
>
>
> --------------------------------------------------------------------------------------------------------
> $ sudo apt-get update
> $ sudo apt-get install libflint-arb-dev libboost-dev libbrial-dev
> libbrial-groebner-dev libbz2-dev bzip2 libcdd-dev libcdd-tools cliquer
> libcliquer-dev cmake curl libcurl4-openssl-dev ecl libec-dev eclib-tools
> gmp-ecm libecm-dev fflas-ffpack libflint-dev flintqs libfplll-dev
> libfreetype6-dev libgc-dev gengetopt libgf2x-dev gfan libgiac-dev xcas
> libgivaro-dev glpk-utils libglpk-dev libgmp-dev libgsl-dev libiml-dev lcalc
> liblfunction-dev libatomic-ops-dev libbraiding-dev libffi-dev libgd-dev
> libhomfly-dev xz-utils liblzma-dev liblinbox-dev liblrcalc-dev libm4ri-dev
> libm4rie-dev meson libmpc-dev libmpfi-dev libmpfr-dev nauty libncurses5-dev
> ninja-build libntl-dev libopenblas-dev openssl libssl-dev palp pari-gp2c
> libpari-dev pari-doc pari-elldata pari-galdata pari-galpol pari-seadata
> libpcre3-dev pkg-config libplanarity-dev planarity libppl-dev ppl-dev
> libprimesieve-dev python3 libpython3-dev python3-distutils python3-venv
> libqhull-dev libreadline-dev librw-dev singular singular-doc
> libsingular4-dev libsqlite3-dev sqlite3 libsuitesparse-dev
> libsymmetrica2-dev sympow tachyon tox libzmq3-dev libz-dev
>
> --------------------------------------------------------------------------------------------------------
>
> and then
>
>
> --------------------------------------------------------------------------------------------------------
> $ sudo apt-get update
> $ sudo apt-get install 4ti2 coinor-cbc coinor-libcbc-dev gpgconf
> openssh-client ffmpeg pari-gp2c graphviz libigraph-dev imagemagick
> libisl-dev libgraphviz-dev libnauty-dev libxml2-dev lrslib pandoc pdf2svg
> libxml-libxslt-perl libxml-writer-perl libxml2-dev libperl-dev
> libfile-slurp-perl libjson-perl libsvg-perl libterm-readkey-perl
> libterm-readline-gnu-perl libmongodb-perl libterm-readline-gnu-perl
> polymake libpolymake-dev r-base-dev r-cran-lattice default-jdk
> libavdevice-dev texlive-latex-extra texlive-xetex latexmk dvipng tex-gyre
> texlive-fonts-recommended texlive-lang-cyrillic texlive-lang-english
> texlive-lang-european texlive-lang-french texlive-lang-german
> texlive-lang-italian texlive-lang-japanese texlive-lang-polish
> texlive-lang-portuguese texlive-lang-spanish
>
> --------------------------------------------------------------------------------------------------------
>
> after that
>
>
> --------------------------------------------------------------------------------------------------------
> $ ./config.status --recheck && ./config.status
>
> --------------------------------------------------------------------------------------------------------
>
> In the end, I got the following (say *):
>
> --------------------------------------------------------------------------------------------------------
> notice: the following SPKGs did not find equivalent system packages:
>
> ecl eclib fflas_ffpack fplll gc givaro libhomfly linbox lrcalc
> meson primecount primesieve qhull rpy2 4ti2 coxeter3 _develop igraph
> libsemigroups polymake _recommended
>
> checking for the package system in use... debian
> configure:
>
> hint: installing the following system packages, if not
> already present, is recommended and may avoid having to
> build them (though some may have to be built anyway):
>
> $ sudo apt-get update
> $ sudo apt-get install ecl libec-dev eclib-tools fflas-ffpack
> libfplll-dev libgc-dev libgivaro-dev libhomfly-dev liblinbox-dev
> liblrcalc-dev meson libprimesieve-dev libqhull-dev
>
> configure:
>
> hint: installing the following system packages, if not
> already present, may provide additional optional features:
>
> $ sudo apt-get update
> $ sudo apt-get install 4ti2 gpgconf openssh-client libigraph-dev
> polymake libpolymake-dev default-jdk libavdevice-dev
>
> configure:
>
> hint: After installation, re-run configure using:
>
> $ ./config.status --recheck && ./config.status
>
> config.status: creating build/make/Makefile-auto
> config.status: creating build/make/Makefile
> config.status: creating src/bin/sage-env-config
> config.status: creating src/bin/sage-src-env-config
> config.status: creating build/bin/sage-build-env-config
> config.status: creating pkgs/sage-conf/_sage_conf/_conf.py
> config.status: executing depfiles commands
> config.status: executing mkdirs commands
> config.status: creating directory /home/mhsong/sage/logs/pkgs
> config.status: creating directory local
> config.status: creating directory local/bin
> config.status: creating directory local/etc
> config.status: creating directory local/include
> config.status: creating directory local/lib
> config.status: creating directory local/lib/pkgconfig
> config.status: creating directory local/share
> config.status: creating directory local/var/lib/sage/installed
> config.status: executing links commands
> config.status: creating convenience symlink prefix -> local
> config.status: creating convenience symlink venv ->
> local/var/lib/sage/venv-python3.10
>
> --------------------------------------------------------------------------------------------------------
>
> So I did follow the instruction again:
>
> --------------------------------------------------------------------------------------------------------
> $ sudo apt-get update
> $ sudo apt-get install ecl libec-dev eclib-tools fflas-ffpack
> libfplll-dev libgc-dev libgivaro-dev libhomfly-dev liblinbox-dev
> liblrcalc-dev meson libprimesieve-dev libqhull-dev
>
> --------------------------------------------------------------------------------------------------------
>
> and then
>
> --------------------------------------------------------------------------------------------------------
> $ sudo apt-get update
> $ sudo apt-get install 4ti2 gpgconf openssh-client libigraph-dev
> polymake libpolymake-dev default-jdk libavdevice-dev
>
> --------------------------------------------------------------------------------------------------------
>
> You can check the details in the attachment 'ubuntu230104.png'.
>
> After that, I did
>
> --------------------------------------------------------------------------------------------------------
> $ ./config.status --recheck && ./config.status
>
> --------------------------------------------------------------------------------------------------------
> But still, I got the same notice *. (You can see this in the attachment,
> 'ununtu_same_notice.png')
>
> How can I get out of this loop and fix all problems?
>
> I really appreciate your time.
> 2023년 1월 4일 수요일 오전 2시 38분 43초 UTC+9에 Matthias Koeppe님이 작성:
>
>> From config.log:
>>
>> PATH: /mnt/c/Program
>> Files/WindowsApps/CanonicalGroupLimited.UbuntuonWindows_2004.2022.1.0_x64__79rhkp1fndgsc/
>> PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared
>> Libraries/redist/intel64_win/compiler/
>> PATH: /mnt/c/Windows/system32/
>> PATH: /mnt/c/Windows/
>> PATH: /mnt/c/Windows/System32/Wbem/
>> PATH: /mnt/c/Windows/System32/WindowsPowerShell/v1.0/
>> PATH: /mnt/c/Windows/System32/OpenSSH/
>> PATH: /mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/
>> PATH: /mnt/c/Program Files/Git/cmd/
>> PATH: /mnt/c/Strawberry/c/bin/
>> PATH: /mnt/c/Strawberry/perl/site/bin/
>> PATH: /mnt/c/Strawberry/perl/bin/
>> PATH: /mnt/c/Users/Song/AppData/Local/Programs/Python/Python39/Scripts/
>> PATH: /mnt/c/Users/Song/AppData/Local/Programs/Python/Python39/
>> PATH: /mnt/c/Users/Song/AppData/Local/Microsoft/WindowsApps/
>> PATH: /mnt/c/Users/Song/AppData/Local/Programs/Microsoft VS Code/bin/
>> PATH: /mnt/c/Program Files/Bandizip/
>> PATH: /mnt/c/texlive/2020/bin/win32/
>> PATH: /mnt/c/Program Files/JetBrains/PyCharm Community Edition 2021.2/bin/
>> PATH: /mnt/c/Users/Song/AppData/Local/afreeca/
>>
>> I'd recommend the following:
>> - Clear the PATH by removing everything that comes from /mnt/c ("export
>> PATH=/usr/local/sbin/:/usr/local/bin/:/usr/sbin/:/sbin/:/bin/:/usr/lib/wsl/lib/")
>> - Start from scratch by cleaning the source tree ("make distclean")
>> - Run "./configure" and follow the instructions regarding Ubuntu package
>> installation that are displayed at the end.
>>
>>
>>
>> On Tuesday, January 3, 2023 at 4:42:59 AM UTC-8 smh...@gmail.com wrote:
>>
>>> I found I don't have the file ffi.h in that folder.
>>>
>>> I typed "make build" and still it didn't work.
>>> Please check the attachment, the end of the installation log.
>>>
>>>
>>> 2023년 1월 2일 월요일 오전 3시 31분 30초 UTC+9에 Matthias Koeppe님이 작성:
>>>
>>>> This log looks fine. Can you check that the file
>>>> /home/mhsong/sage/local/include/ffi.h exists?
>>>> This may be an intermittent problem on WSL (see
>>>> https://trac.sagemath.org/ticket/31088).
>>>> Try restarting the build by typing "make build".
>>>>
>>>> On Sunday, January 1, 2023 at 1:03:53 AM UTC-8 smh...@gmail.com wrote:
>>>>
>>>>>
>>>>> Here is the log file.
>>>>> Thank you for your time.
>>>>> 2022년 12월 31일 토요일 오전 9시 57분 10초 UTC+9에 Matthias Koeppe님이 작성:
>>>>>
>>>>>> From python...log:
>>>>>>
>>>>>> building '_ctypes' extension gcc -fPIC -Wno-unused-result
>>>>>> -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -g -O2 -std=c99
>>>>>> -Wextra -Wno-unused-result -Wno-unused-parameter
>>>>>> -Wno-missing-field-initializers -Werror=implicit-function-declaration
>>>>>> -fvisibility=hidden -I./Include/internal -I./Include -I.
>>>>>> -I/home/mhsong/sage/local/include -I/usr/include/x86_64-linux-gnu
>>>>>> -I/usr/local/include
>>>>>> -I/home/mhsong/sage/local/var/lib/sage/venv-python3.10.8/var/tmp/sage/build/python3-3.10.8/src/Include
>>>>>>
>>>>>> -I/home/mhsong/sage/local/var/lib/sage/venv-python3.10.8/var/tmp/sage/build/python3-3.10.8/src
>>>>>>
>>>>>> -c
>>>>>> /home/mhsong/sage/local/var/lib/sage/venv-python3.10.8/var/tmp/sage/build/python3-3.10.8/src/Modules/_ctypes/_ctypes.c
>>>>>>
>>>>>> -o
>>>>>> build/temp.linux-x86_64-3.10/home/mhsong/sage/local/var/lib/sage/venv-python3.10.8/var/tmp/sage/build/python3-3.10.8/src/Modules/_ctypes/_ctypes.o
>>>>>>
>>>>>> -DPy_BUILD_CORE_MODULE
>>>>>> /home/mhsong/sage/local/var/lib/sage/venv-python3.10.8/var/tmp/sage/build/python3-3.10.8/src/Modules/_ctypes/_ctypes.c:107:10:
>>>>>>
>>>>>> fatal error: ffi.h: No such file or directory 107 | #include <ffi.h> |
>>>>>> ^~~~~~~ compilation terminated.
>>>>>>
>>>>>> Could you post logs/pkgs/libffi*.log please?
>>>>>>
>>>>>>
>>>>>> On Friday, December 30, 2022 at 4:49:00 PM UTC-8 smh...@gmail.com
>>>>>> wrote:
>>>>>>
>>>>>>> OS: Windows10 (Build 19044.2364)
>>>>>>>
>>>>>>> I tried to install sagemath on Ubuntu but it failed.
>>>>>>>
>>>>>>> Could you check my logs and what I did, and tell me what to do at
>>>>>>> this stage?
>>>>>>>
>>>>>>
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