This might be useful:

" You can also use --with-python=/path/to/python3_binary to tell Sage to 
use /path/to/python3_binary to set up the venv. 

Note that setting up venv requires a number of Python modules to be 
available within the Python in question. Currently, for Sage 9.2, these 
modules are as follows: sqlite3, ctypes, math, hashlib, crypt, readline, 
socket, zlib, distutils.core - they will be checked for by configure."

>From https://doc.sagemath.org/pdf/en/installation/installation.pdf  on page 
15. 

I will try the above when Beta 8 is out and see.


On Saturday, April 9, 2022 at 2:22:13 PM UTC-5 hohoa...@gmail.com wrote:

> > configure informs you about the system packages that should be 
> installed. 
> > It's on the last screen of the configure output.
>
> Would it be too late to fix the issues related to python3-1.0.4 after 
> 'configure' was run?
>
> Any way, this is the last screen of configure output:
>
> config.status: creating convenience symlink venv -> 
> local/var/lib/sage/venv-python3.10
> configure:
>
>     notice: the following SPKGs did not find equivalent system packages:
>
>         arb cddlib ecl eclib flint fplll gc giac lcalc libhomfly linbox 
> lrcalc pari pari_galdata pari_seadata_small primecount primesieve qhull 
> singular   4ti2 _recommended coxeter3 gp2c igraph libsemigroups lrslib 
> pari_elldata pari_galpol pari_nftables pari_seadata polymake
>
> checking for the package system in use... (ignoring conda because no 
> environment is active) debian
> configure:
>
>     hint: installing the following system packages, if not
>     already present, is recommended and may avoid having to
>     build them (though some may have to be built anyway):
>
>       $ sudo apt-get update
>       $ sudo apt-get install  libflint-arb-dev libcdd-dev libcdd-tools ecl 
> libec-dev eclib-tools libflint-dev libfplll-dev libgc-dev libgiac-dev xcas 
> lcalc liblfunction-dev libhomfly-dev liblinbox-dev liblrcalc-dev pari-gp2c 
> libpari-dev pari-doc pari-elldata pari-galdata pari-galpol pari-seadata 
> libprimesieve-dev libqhull-dev singular singular-doc libsingular4-dev
>
> configure:
>
>     hint: installing the following system packages, if not
>     already present, may provide additional optional features:
>
>       $ sudo apt-get update
>       $ sudo apt-get install  4ti2 default-jdk libavdevice-dev pari-gp2c 
> libigraph-dev lrslib polymake libpolymake-dev
>
> configure:
>
>     hint: After installation, re-run configure using:
>
>       $ ./config.status --recheck && ./config.status
>
>
> On Sat, Apr 9, 2022 at 12:51 PM Matthias Koeppe <matthia...@gmail.com> 
> wrote:
>
>> configure informs you about the system packages that should be installed. 
>> It's on the last screen of the configure output.
>>
>>
>>
>> On Saturday, April 9, 2022 at 8:50:01 AM UTC-7 hohoa...@gmail.com wrote:
>>
>>> $ python
>>> Python 3.10.4 (main, Mar 24 2022, 16:12:56) [GCC 9.4.0] on linux
>>> Type "help", "copyright", "credits" or "license" for more information.
>>>
>>> >>> import sqlite3, ctypes, math, hashlib, crypt, socket, zlib, 
>>> distutils.core, ssl
>>> <stdin>:1: DeprecationWarning: The distutils package is deprecated and 
>>> slated for removal in Python 3.12. Use setuptools or check PEP 632 for 
>>> potential alternatives
>>> Traceback (most recent call last):
>>>   File "<stdin>", line 1, in <module>
>>> ModuleNotFoundError: No module named 'distutils.core'
>>> >>>
>>>
>>> It looks like 'distutils.core' has been deprecated (and removed from 
>>> python3.10-dev?)
>>>
>>> > Use setuptools or check PEP 632 for potential alternatives
>>>
>>> Should 'setuptools' be installed so that sage will use python-3.10.4 on 
>>> the system?
>>>
>>> Thanks for your help
>>>
>>> Regards,
>>>
>>> phiho
>>>
>>>
>>> Regards,
>>>
>>> phiho
>>>
>>>
>>> On Sat, Apr 9, 2022 at 7:37 AM Dima Pasechnik <dim...@gmail.com> wrote:
>>>
>>>> On Sat, Apr 9, 2022 at 2:14 AM ph h <hohoa...@gmail.com> wrote:
>>>> >
>>>> >
>>>> > >> sudo apt-get install libffi-dev ....
>>>> >
>>>> > > Thanks, that works.
>>>> > But ...
>>>> >
>>>> > $ python --version
>>>> > Python 3.10.4
>>>> >
>>>> > $ python3 --version
>>>> > Python 3.10.4
>>>> >
>>>> > $ sudo apt-get install python3.10-dev
>>>> > Reading package lists... Done
>>>> > Building dependency tree
>>>> > Reading state information... Done
>>>> > python3.10-dev is already the newest version (3.10.4-1+focal1).
>>>> > 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
>>>> >
>>>> > $ sudo apt-get install libffi-dev libbz2-dev bzip2 xz-utils 
>>>> liblzma-dev
>>>> > Reading package lists... Done
>>>> > Building dependency tree
>>>> > Reading state information... Done
>>>> > bzip2 is already the newest version (1.0.8-2).
>>>> > libbz2-dev is already the newest version (1.0.8-2).
>>>> > libffi-dev is already the newest version (3.3-4).
>>>> > liblzma-dev is already the newest version (5.2.4-1ubuntu1).
>>>> > xz-utils is already the newest version (5.2.4-1ubuntu1).
>>>> > 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
>>>> >
>>>> > $ ls -l logs/pkgs | grep ython
>>>> > -rw-rw-rw- 1 hph hph  109867 Apr  8 19:33 cython-0.29.28.log
>>>> > -rw-rw-rw- 1 hph hph 1930797 Apr  8 19:24 python3-3.10.3.log
>>>> >
>>>> > From config.log:
>>>> >
>>>> > ## -------------------------------------------------------- ##
>>>> > ## Checking whether SageMath should install SPKG python3... ##
>>>> > ## -------------------------------------------------------- ##
>>>> > configure:31722: checking whether any of bzip2 liblzma libffi is 
>>>> installed as or will be installed as SPKG
>>>> > configure:31731: result: no
>>>> > configure:31735: checking for python3 >= 3.7.0, < 3.11.0 with modules 
>>>> sqlite3, ctypes, math, hashlib, crypt, socket, zlib, distutils.core, ssl
>>>> > configure:32402: result:
>>>> > configure:32426: checking ... whether /usr/bin/python3 is good
>>>> > configure:32997: result: no, the version is in the supported range 
>>>> but cannot import one of the required modules: sqlite3, ctypes, math, 
>>>> hashlib, crypt, socket, zlib, distutils.core, ssl
>>>>
>>>> which of these modules is not there?
>>>>
>>>> start python3 and try running
>>>> >>> import sqlite3, ctypes, math, hashlib, crypt, socket, zlib, 
>>>> distutils.core, ssl
>>>>
>>>>
>>>>
>>>> > configure:32426: checking ... whether /bin/python3 is good
>>>> > configure:32997: result: no, the version is in the supported range 
>>>> but cannot import one of the required modules: sqlite3, ctypes, math, 
>>>> hashlib, crypt, socket, zlib, distutils.core, ssl
>>>> > configure:33048: result:
>>>> > configure:33052: to try to use a different system python, use 
>>>> ./configure --with-python=/path/to/python
>>>> > configure:33079: no suitable system package found for SPKG python3
>>>> > #
>>>> >
>>>> > Please advise what else needs to be done to fix this issue.
>>>> >
>>>> > Thank you for your help.
>>>> >
>>>> > Regards,
>>>> >
>>>> > phiho
>>>> >
>>>> >
>>>> >
>>>> > On Fri, Apr 8, 2022 at 5:57 PM ph h <hohoa...@gmail.com> wrote:
>>>> >>
>>>> >> Hi,
>>>> >>
>>>> >> > sudo apt-get install libffi-dev ....
>>>> >>
>>>> >> Thanks, that works.
>>>> >>
>>>> >> phiho
>>>> >>
>>>> >>
>>>> >> On Fri, Apr 8, 2022 at 5:18 PM Dima Pasechnik <dim...@gmail.com> 
>>>> wrote:
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>> On Fri, 8 Apr 2022, 22:06 ph h, <hohoa...@gmail.com> wrote:
>>>> >>>>
>>>> >>>> Hi,
>>>> >>>>
>>>> >>>> > Yes, this is needed for Python headers, but still
>>>> >>>> > sudo apt-get libffi-dev libbz2-dev bzip2 xz-utils liblzma-dev 
>>>> openssl libssl-dev
>>>> >>>>
>>>> >>>> ~/sage-9.6$ sudo apt-get libffi-dev libbz2-dev bzip2 xz-utils 
>>>> liblzma-dev openssl libssl-dev
>>>> >>>> E: Invalid operation libffi-dev
>>>> >>>>
>>>> >>>> Is something missing on this WSL system?
>>>> >>>
>>>> >>>
>>>> >>> sorry, it should be
>>>> >>>
>>>> >>> sudo apt-get install libffi-dev ....
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>>>
>>>> >>>> Thank you for your help.
>>>> >>>>
>>>> >>>> Regards,
>>>> >>>>
>>>> >>>> phiho
>>>> >>>>
>>>> >>>>
>>>> >>>> On Fri, Apr 8, 2022 at 9:53 AM Dima Pasechnik <dim...@gmail.com> 
>>>> wrote:
>>>> >>>>>
>>>> >>>>> On Fri, Apr 8, 2022 at 2:39 PM Vincent Delecroix
>>>> >>>>> <20100.d...@gmail.com> wrote:
>>>> >>>>> >
>>>> >>>>> > You could install the python3-dev Ubuntu package to fix the 
>>>> issue.
>>>> >>>>>
>>>> >>>>> Yes, this is needed for Python headers, but still
>>>> >>>>>
>>>> >>>>> sudo apt-get libffi-dev libbz2-dev bzip2 xz-utils liblzma-dev 
>>>> openssl libssl-dev
>>>> >>>>>
>>>> >>>>> might be needed too.
>>>> >>>>>
>>>> >>>>>
>>>> >>>>> >
>>>> >>>>> > Le 08/04/2022 à 05:32, 'Nasser M. Abbasi' via sage-devel a 
>>>> écrit :
>>>> >>>>> > > looking at config.log, it rejected the python version Python 
>>>> 3.10.4 I had
>>>> >>>>> > > because of this
>>>> >>>>> > >
>>>> >>>>> > > ## -------------------------------------------------------- ##
>>>> >>>>> > > ## Checking whether SageMath should install SPKG python3... ##
>>>> >>>>> > > ## -------------------------------------------------------- ##
>>>> >>>>> > > configure:31945: checking whether any of bzip2 liblzma libffi 
>>>> is installed
>>>> >>>>> > > as or will be installed as SPKG
>>>> >>>>> > > configure:31954: result: no
>>>> >>>>> > > configure:31958: checking for python3 >= 3.7.0, < 3.11.0 with 
>>>> modules
>>>> >>>>> > > sqlite3, ctypes, math, hashlib, crypt, socket, zlib, 
>>>> distutils.core, ssl
>>>> >>>>> > > configure:32625: result:
>>>> >>>>> > > configure:32649: checking ... whether /bin/python3 is good
>>>> >>>>> > > CC=gcc CXX=g++ -std=gnu++11 conftest_venv/bin/python3 
>>>> conftest.py --verbose
>>>> >>>>> > > build --build-base=conftest.dir
>>>> >>>>> > > 
>>>> /mnt/g/nabbasi/data/CDROM/sagemath/sage-9.6.beta7/conftest.py:1:
>>>> >>>>> > > DeprecationWarning: The distutils package is deprecated and 
>>>> slated for
>>>> >>>>> > > removal in Python 3.12. Use setuptools or check PEP 632 for 
>>>> potential
>>>> >>>>> > > alternatives
>>>> >>>>> > > from distutils.core import setup
>>>> >>>>> > > running build
>>>> >>>>> > > running build_ext
>>>> >>>>> > > building 'config_check_distutils' extension
>>>> >>>>> > > creating conftest.dir
>>>> >>>>> > > creating conftest.dir/temp.linux-x86_64-3.10
>>>> >>>>> > > gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 
>>>> -Wall -g
>>>> >>>>> > > -fstack-protector-strong -Wformat -Werror=format-security -g
>>>> >>>>> > > -fstack-protector-strong -Wformat -Werror=format-security 
>>>> -fPIC
>>>> >>>>> > > 
>>>> -I/mnt/g/nabbasi/data/CDROM/sagemath/sage-9.6.beta7/conftest_venv/include
>>>> >>>>> > > -I/usr/include/python3.10 -c conftest.c -o
>>>> >>>>> > > conftest.dir/temp.linux-x86_64-3.10/conftest.o
>>>> >>>>> > > conftest.c:75:10: fatal error: Python.h: No such file or 
>>>> directory
>>>> >>>>> > > 75 | #include <Python.h>
>>>> >>>>> > > | ^~~~~~~~~~
>>>> >>>>> > > compilation terminated.
>>>> >>>>> > > error: command '/bin/gcc' failed with exit code 1
>>>> >>>>> > > configure:33213: result: no, the version is in the supported 
>>>> range, and the
>>>> >>>>> > > modules can be imported, but distutils cannot build a C 
>>>> extension
>>>> >>>>> > > configure:32649: checking ... whether /usr/bin/python3 is good
>>>> >>>>> > > CC=gcc CXX=g++ -std=gnu++11 conftest_venv/bin/python3 
>>>> conftest.py --verbose
>>>> >>>>> > > build --build-base=conftest.dir
>>>> >>>>> > > 
>>>> /mnt/g/nabbasi/data/CDROM/sagemath/sage-9.6.beta7/conftest.py:1:
>>>> >>>>> > > DeprecationWarning: The distutils package is deprecated and 
>>>> slated for
>>>> >>>>> > > removal in Python 3.12. Use setuptools or check PEP 632 for 
>>>> potential
>>>> >>>>> > > alternatives
>>>> >>>>> > > from distutils.core import setup
>>>> >>>>> > > running build
>>>> >>>>> > > running build_ext
>>>> >>>>> > > building 'config_check_distutils' extension
>>>> >>>>> > > creating conftest.dir
>>>> >>>>> > > creating conftest.dir/temp.linux-x86_64-3.10
>>>> >>>>> > > gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 
>>>> -Wall -g
>>>> >>>>> > > -fstack-protector-strong -Wformat -Werror=format-security -g
>>>> >>>>> > > -fstack-protector-strong -Wformat -Werror=format-security 
>>>> -fPIC
>>>> >>>>> > > 
>>>> -I/mnt/g/nabbasi/data/CDROM/sagemath/sage-9.6.beta7/conftest_venv/include
>>>> >>>>> > > -I/usr/include/python3.10 -c conftest.c -o
>>>> >>>>> > > conftest.dir/temp.linux-x86_64-3.10/conftest.o
>>>> >>>>> > > conftest.c:75:10: fatal error: Python.h: No such file or 
>>>> directory
>>>> >>>>> > > 75 | #include <Python.h>
>>>> >>>>> > > | ^~~~~~~~~~
>>>> >>>>> > > compilation terminated.
>>>> >>>>> > > error: command '/bin/gcc' failed with exit code 1
>>>> >>>>> > > configure:33213: result: no, the version is in the supported 
>>>> range, and the
>>>> >>>>> > > modules can be imported, but distutils cannot build a C 
>>>> extension
>>>> >>>>> > > configure:33271: result:
>>>> >>>>> > > configure:33275: to try to use a different system python, use 
>>>> ./configure
>>>> >>>>> > > --with-python=/path/to/python
>>>> >>>>> > > configure:33302: no suitable system package found for SPKG 
>>>> python3
>>>> >>>>> > >
>>>> >>>>> > >
>>>> >>>>> > >
>>>> >>>>> > > On Thursday, April 7, 2022 at 11:18:56 AM UTC-5 
>>>> dim...@gmail.com wrote:
>>>> >>>>> > >
>>>> >>>>> > >> On Thu, Apr 7, 2022 at 4:41 PM 'Nasser M. Abbasi' via 
>>>> sage-devel
>>>> >>>>> > >> <sage-...@googlegroups.com> wrote:
>>>> >>>>> > >>>
>>>> >>>>> > >>> Here is the information you asked for
>>>> >>>>> > >>>
>>>> >>>>> > >>>> which python3
>>>> >>>>> > >>> /bin/python3
>>>> >>>>> > >>>
>>>> >>>>> > >>>> python3 --version
>>>> >>>>> > >>> Python 3.10.4
>>>> >>>>> > >>>
>>>> >>>>> > >>>> which python
>>>> >>>>> > >>> /bin/python
>>>> >>>>> > >>>
>>>> >>>>> > >>>> python --version
>>>> >>>>> > >>> Python 3.10.4
>>>> >>>>> > >>>>
>>>> >>>>> > >>>
>>>> >>>>> > >> Thanks.
>>>> >>>>> > >> How about config.log?
>>>> >>>>> > >> I suppose your python3 is rejected as it does not have all 
>>>> the
>>>> >>>>> > >> required by Sage modules
>>>> >>>>> > >> installed. (Or its other dependencies are not fully 
>>>> installed)
>>>> >>>>> > >>
>>>> >>>>> > >> At the end of the run of ./configure there is a message 
>>>> printed with
>>>> >>>>> > >> recommendations
>>>> >>>>> > >> what you should install system-wide.
>>>> >>>>> > >> In particular, you should run
>>>> >>>>> > >>
>>>> >>>>> > >> sudo apt-get libffi-dev libbz2-dev bzip2 xz-utils liblzma-dev
>>>> >>>>> > >>
>>>> >>>>> > >>
>>>> >>>>> > >>
>>>> >>>>> > >>
>>>> >>>>> > >>>
>>>> >>>>> > >>> On Thursday, April 7, 2022 at 3:39:03 AM UTC-5 
>>>> dim...@gmail.com wrote:
>>>> >>>>> > >>>>
>>>> >>>>> > >>>> On Thu, Apr 7, 2022 at 9:01 AM Dima Pasechnik <
>>>> dim...@gmail.com> wrote:
>>>> >>>>> > >>>>>
>>>> >>>>> > >>>>> On Thu, Apr 7, 2022 at 6:17 AM 'Nasser M. Abbasi' via 
>>>> sage-devel
>>>> >>>>> > >>>>> <sage-...@googlegroups.com> wrote:
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>> Basic question:
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>> I Downloaded beta 7 source code. When I do ./configure, 
>>>> it tells me
>>>> >>>>> > >> that it wants to install Python 3-3.1.0.3 since no suitable 
>>>> one found.
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>> However, I have Python 3.10.4 installed.
>>>> >>>>> > >>>>>> So why is it building [python3-3.10.3] ?
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>>> which python
>>>> >>>>> > >>>>>> /bin/python
>>>> >>>>> > >>>>>>> python --version
>>>> >>>>> > >>>>>> Python 3.10.4
>>>> >>>>> > >>>>>
>>>> >>>>> > >>>>> the tests in ./configure are for python3, not python
>>>> >>>>> > >>>>>
>>>> >>>>> > >>>>> What's the output of
>>>> >>>>> > >>>>>
>>>> >>>>> > >>>>> which python3
>>>> >>>>> > >>>>>
>>>> >>>>> > >>>>> ?
>>>> >>>>> > >>>>
>>>> >>>>> > >>>> also, check
>>>> >>>>> > >>>>
>>>> >>>>> > >>>> python3 --version
>>>> >>>>> > >>>>
>>>> >>>>> > >>>>
>>>> >>>>> > >>>> In any case, if you're still stuck, please post the 
>>>> top-level config.log
>>>> >>>>> > >>>>
>>>> >>>>> > >>>>
>>>> >>>>> > >>>>
>>>> >>>>> > >>>>
>>>> >>>>> > >>>>>
>>>> >>>>> > >>>>>
>>>> >>>>> > >>>>>>>
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>> I am on Ubuntu 20.04
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>> I hope this Python it is building will not interfere 
>>>> with my own
>>>> >>>>> > >> Python after installation of sagemath when it is done 
>>>> building?
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>> --Nasser
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>>
>>>> >>>>> > >>>>>> --
>>>> >>>>> > >>>>>> You received this message because you are subscribed to 
>>>> the Google
>>>> >>>>> > >> Groups "sage-devel" group.
>>>> >>>>> > >>>>>> To unsubscribe from this group and stop receiving emails 
>>>> from it,
>>>> >>>>> > >> send an email to sage-devel+...@googlegroups.com.
>>>> >>>>> > >>>>>> To view this discussion on the web visit
>>>> >>>>> > >> 
>>>> https://groups.google.com/d/msgid/sage-devel/164fbf11-73a4-432f-be15-0c2db3c48e49n%40googlegroups.com
>>>> >>>>> > >> .
>>>> >>>>> > >>>
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>>>> >>>>> > >> .
>>>> >>>>> > >>
>>>> >>>>> > >
>>>> >>>>> >
>>>> >>>>> > --
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