(Is G: a network drive by any chance?) On Tuesday, February 15, 2022 at 8:46:41 AM UTC-8 Matthias Koeppe wrote:
> I would suggest to try whether the "Invalid argument" syscall errors go > away if you clone the Sage source tree in the Linux file system, for > example, in "/sage", instead of a location mounted from the Windows file > system (/mnt/g/Maths/sage-9.5/clone/). > > > > > On Tuesday, February 15, 2022 at 12:14:30 AM UTC-8 hohoa...@gmail.com > wrote: > >> Hi, >> >> Thank you so much for your advice. >> >> I just started afresh with a new clone from github and following the >> instructions from https://sagemanifolds.obspm.fr/install_ubuntu.html >> >> After running './configure', conda was deactivated (twice): >> >> $ which conda >> /home/hph/miniconda3/bin/conda >> >> $ conda deactivate >> $ conda deactivate >> >> Then: >> >> $ make ccache >> $ MAKE="make -j8" make >> >> after 10 times of -re-make (with MAKE="make -j8"): >> >> $ ls -l *.log | wc -l >> 152 >> >> $ ls -l *.log.error | wc -l >> 12 >> >> All the errors from the earlier make's seemed to be fixed eventually in >> the later re-make, all except 'scipy-1.7.2' and 'sagelib-9.5' >> >> Please find attached 'config.log.7z' and 'Error building a wheel for >> scipy-1.7.2 - scipy-1.7.2.log.error.7z' (from re-make #5 to #10) and >> 'sagelib-9.5.log.error.7z' >> >> The re-make #10, scipy-1.7.2 failed with: >> >> *error: Command "gfortran -Wall -g -ffixed-form -fno-second-underscore -g >> -O2 -fPIC -fPIC -O3 -funroll-loops >> -I/mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/numpy/core/include >> >> -Ibuild/src.linux-x86_64-3.8/numpy/distutils/include -c -c >> scipy/interpolate/fitpack/curev.f -o >> build/temp.linux-x86_64-3.8/scipy/interpolate/fitpack/curev.o" failed with >> exit status 1* >> >> ########### CLIB COMPILER OPTIMIZATION ########### >> Platform : >> Architecture: x64 >> Compiler : gcc >> >> CPU baseline : >> Requested : 'min' >> Enabled : SSE SSE2 SSE3 >> Flags : -msse -msse2 -msse3 >> Extra checks: none >> >> CPU dispatch : >> Requested : 'max -xop -fma4' >> Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F >> AVX512CD AVX512_KNL AVX512_KNM AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL >> Generated : none >> CCompilerOpt.cache_flush[809] : write cache to path -> >> /mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/var/tmp/sage/build/scipy-1.7.2/src/build/temp.linux-x86_64-3.8/ccompiler_opt_cache_clib.py >> *error: Command "gfortran -Wall -g -ffixed-form -fno-second-underscore >> -g -O2 -fPIC -fPIC -O3 -funroll-loops >> -I/mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/numpy/core/include >> >> -Ibuild/src.linux-x86_64-3.8/numpy/distutils/include -c -c >> scipy/interpolate/fitpack/curev.f -o >> build/temp.linux-x86_64-3.8/scipy/interpolate/fitpack/curev.o" failed with >> exit status 1* >> Building wheel for scipy (pyproject.toml): finished with status 'error' >> ERROR: Failed building wheel for scipy >> Failed to build scipy >> ERROR: Failed to build one or more wheels >> >> ******************************************************************************** >> Error building a wheel for scipy-1.7.2 >> >> ******************************************************************************** >> >> real 3m25.289s >> user 6m14.359s >> sys 1m47.406s >> >> In the re-make #12, 'sagelib-9.5' build failed with: >> *error: [Errno 22] Invalid argument: 'sage/rings/power_series_poly.pxd'* >> >> Discovering Python/Cython source code.... >> distributions = [''] >> Discovered Python/Cython sources, time: 2.99 seconds. >> running build >> Generating auto-generated sources >> Building interpreters for fast_callable >> running build_cython >> Enabling Cython debugging support >> *error: [Errno 22] Invalid argument: 'sage/rings/power_series_poly.pxd'* >> >> real 0m17.411s >> user 0m4.844s >> sys 0m11.797s >> >> >> Regards, >> >> phiho >> >> >> On Thu, Feb 3, 2022 at 2:36 PM Matthias Koeppe <matthia...@gmail.com> >> wrote: >> >>> It would probably be a good idea to do "make ccache" and then re-attempt >>> the build. >>> On Thursday, February 3, 2022 at 11:32:32 AM UTC-8 hohoa...@gmail.com >>> wrote: >>> >>>> Hi, >>>> >>>> Actually this approach was tried a few times before. The report was >>>> from a fresh clone and build. >>>> >>>> 'MAKE="make -j8" make' was just tried again and the re-make ended >>>> with these failed packages: >>>> >>>> <quote> >>>> real 13m20.842s >>>> user 14m38.391s >>>> sys 6m4.781s >>>> *************************************************************** >>>> Error building Sage. >>>> >>>> The following package(s) may have failed to build (not necessarily >>>> during this run of 'make all-start'): >>>> >>>> * package: arb-2.19.0.p0 >>>> last build time: Feb 3 12:08 >>>> log file: >>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/arb-2.19.0.p0.log >>>> >>>> * package: pplpy-0.8.6 >>>> last build time: Feb 3 12:09 >>>> log file: /mnt/g/Maths/sage-9.5/clone/logs/pkgs/pplpy-0.8.6.log >>>> >>>> * package: sphinx-4.2.0 >>>> last build time: Feb 3 12:09 >>>> log file: >>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/sphinx-4.2.0.log >>>> >>>> * package: numpy-1.21.4 >>>> last build time: Feb 3 12:13 >>>> log file: >>>> /mnt/g/Maths/sage-9.5/clone/logs/pkgs/numpy-1.21.4.log >>>> >>>> It is safe to delete any log files and build directories, but they >>>> contain information that is helpful for debugging build problems. >>>> WARNING: If you now run 'make' again, the build directory of the >>>> same version of the package will, by default, be deleted. Set the >>>> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >>>> >>>> </quote> >>>> >>>> Please find attached 'config.log.7z' and the logs of failed packages* >>>> including numpy-1.21.4*.log2.7z. >>>> >>>> FWIW, 'sage-9.4' was successfully built (the first time) from the >>>> tarball (with 'configure' pre-made, downloaded from github) on this same >>>> machine about a week ago. >>>> (The tarball for 'sage-9.5' did not go far) >>>> >>>> numpy-1.21.4 still failed in another re-make >>>> >>>> Regards, >>>> >>>> phiho >>>> >>>> P.S: I will be out of town and will have no access to the Internet (a >>>> couple weeks or so), please allow me to catch up later on. >>>> >>>> >>>> On Thu, Feb 3, 2022 at 11:20 AM Matthias Koeppe <matthia...@gmail.com> >>>> wrote: >>>> >>>>> The compilation fails with a failed system call: >>>>> >>>>> /usr/include/x86_64-linux-gnu/bits/types.h:142:10: fatal error: >>>>> /mnt/g/Maths/sage-9.5/clone/local/var/lib/sage/venv-python3.8/include/bits/time64.h: >>>>> >>>>> Invalid argument >>>>> 142 | #include <bits/time64.h> /* Defines __TIME*_T_TYPE macros. >>>>> */ >>>>> | ^~~~~~~~~~~~~~~ >>>>> compilation terminated. >>>>> >>>>> This is likely sporadic and will go away if you just restart "make". >>>>> Tracked at https://trac.sagemath.org/ticket/31088 >>>>> >>>>> >>>>> >>>>> On Thursday, February 3, 2022 at 1:22:11 AM UTC-8 hohoa...@gmail.com >>>>> wrote: >>>>> >>>>>> Greetings, >>>>>> >>>>>> The instructions at >>>>>> https://sagemanifolds.obspm.fr/install_ubuntu.html were followed. >>>>>> >>>>>> It is much appreciated if someone would kindly point out what was >>>>>> missing in the build process. >>>>>> >>>>>> Please find attached 'install.log.7z' and 'numpy-1.21.4.log.7z' >>>>>> >>>>>> Regards, >>>>>> >>>>>> phiho >>>>>> >>>>>> P.S: >>>>>> $ uname -a >>>>>> Linux 4.4.0-17763-Microsoft #2268-Microsoft Thu Oct 07 16:36:00 PST >>>>>> 2021 x86_64 x86_64 x86_64 GNU/Linux >>>>>> >>>>>> >>>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "sage-devel" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to sage-devel+...@googlegroups.com. >>>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/sage-devel/461e60bb-5ae8-453c-b332-2bf2b02d6e14n%40googlegroups.com >>>>> >>>>> <https://groups.google.com/d/msgid/sage-devel/461e60bb-5ae8-453c-b332-2bf2b02d6e14n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>> . >>>>> >>>> -- >>> You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+...@googlegroups.com. >>> >> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/751fde85-2d70-4fad-9f5a-05114f670b74n%40googlegroups.com >>> >>> <https://groups.google.com/d/msgid/sage-devel/751fde85-2d70-4fad-9f5a-05114f670b74n%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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