On Thu, Jun 3, 2021 at 2:07 PM Sébastien Labbé <sla...@gmail.com> wrote: > > > >> did he do >> >> source .homebrew-build-env >> >> ? >> >> This must be done in any Homebrew-based Sage build or use session. > > > Good point. We did it, but maybe not before the second ./configure. So, we > redid from scratch: > > > $ source .homebrew-build-env > source .homebrew-build-env > > Doing this does not change the python3 to /usr/bin/python3 > > $ which python3 > /usr/local/bin/python3 > $ python3 > Python 3.9.5 (default, May 4 2021, 03:36:27) > [Clang 12.0.0 (clang-1200.0.32.29)] on darwin > Type "help", "copyright", "credits" or "license" for more information. > >>> import readline > $Traceback (most recent call last): > File "<stdin>", line 1, in <module> > ImportError: > dlopen(/usr/local/Cellar/python@3.9/3.9.5/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/readline.cpython-39-darwin.so, > 2): Library not loaded: /usr/local/opt/readline/lib/libreadline.8.dylib > Referenced from: > /usr/local/Cellar/python@3.9/3.9.5/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/readline.cpython-39-darwin.so > Reason: image not found
works for me: % python3 Python 3.9.5 (default, May 4 2021, 03:36:27) [Clang 12.0.0 (clang-1200.0.32.29)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>> import readline >>> % brew install readline Warning: readline 8.1 is already installed and up-to-date. To reinstall 8.1, run: brew reinstall readline % ls -l /usr/local/opt/readline/lib/libreadline.8.dylib lrwxr-xr-x 1 dima staff 21 18 Nov 2020 /usr/local/opt/readline/lib/libreadline.8.dylib -> libreadline.8.1.dylib I think your Homebrew install is shot. Please fix it, it has nothing to do with Sage at this point. Maybe, brew reinstall readline brew reinstall python3 > > Although /usr/bin/python is really python3.7 and it can import readline > correctly (I forgot to copy paste that from his computer). > > Then, the following run of ./configure is weird for two reasons: > - it says that /usr/bin/python3 is okay, while an error is raised > - it says that gcc is installed on the system but gfortran is not > > $ ./configure > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... config/install-sh -c -d > checking for gawk... no > checking for mawk... no > checking for nawk... no > checking for awk... awk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking whether to enable maintainer-specific portions of Makefiles... yes > checking for root user... no > checking build system type... x86_64-apple-darwin20.5.0 > checking host system type... x86_64-apple-darwin20.5.0 > checking for a sed that does not truncate output... /usr/bin/sed > checking for ar... yes > checking for m4... yes > checking for pkg-config... /usr/local/bin/pkg-config > checking pkg-config is at least version 0.29... yes > checking for ranlib... yes > checking for strip... yes > checking for GNU or BSD tar... /usr/bin/tar > checking for GNU make... /usr/bin/make > checking for Python... > /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python > checking for latex... yes > checking for perl... /usr/bin/perl > checking for Perl version 5.8.0 or later... yes > checking whether a conda environment is active... no > checking for gcc... gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking whether gcc understands -c and -o together... yes > checking whether make supports the include directive... yes (GNU style) > checking dependency style of gcc... none > checking how to run the C preprocessor... gcc -E > checking for g++... g++ > checking whether we are using the GNU C++ compiler... yes > checking whether g++ accepts -g... yes > checking dependency style of g++... none > checking for gfortran... gfortran > checking whether we are using the GNU Fortran compiler... no > checking whether gfortran accepts -g... no > checking for gcc... gcc > checking whether we are using the GNU Objective C compiler... yes > checking whether gcc accepts -g... yes > checking dependency style of gcc... none > checking for g++... g++ > checking whether we are using the GNU Objective C++ compiler... yes > checking whether g++ accepts -g... yes > checking dependency style of g++... none > checking how to run the C++ preprocessor... g++ -E > checking for grep that handles long lines and -e... /usr/bin/grep > checking for egrep... /usr/bin/grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking complex.h usability... yes > checking complex.h presence... yes > checking for complex.h... yes > checking for sqrt in -lm... yes > You are using OS X Lion (or later). > You are strongly advised to install Apple's latest Xcode > unless you already have it. You can install this using > the App Store. Also, make sure you install Xcode's > Command Line Tools -- see Sage's README.txt. > ----------------------------------------------------------------------------- > Checking whether SageMath should install SPKG gcc... > checking for C compiler vendor... clang > checking whether g++ supports C++11 features with -std=gnu++11... yes > checking for gcc option to accept ISO C99... none needed > checking if gcc accepts -dumpversion option... yes > checking gcc version... 4.2.1 > checking if g++ accepts -dumpversion option... yes > checking g++ version... 4.2.1 > checking whether C++ compiler accepts "-march=native"... yes > checking for OpenMP flag of C compiler... unknown > checking for OpenMP flag of C++ compiler... unknown > configure: will use system package and not install SPKG gcc > checking for the location of crti.o... > ----------------------------------------------------------------------------- > .......... > .......... > ----------------------------------------------------------------------------- > Checking whether SageMath should install SPKG arb... > checking installing flint? ... checking arb.h usability... yes > checking arb.h presence... yes > checking for arb.h... yes > checking for acb_mat_eig_simple in -larb... yes > configure: will use system package and not install SPKG arb > checking for Fortran flag needed to accept free-form source... unknown > configure: Your Fortran compiler does not accept free-format source code > configure: which means the compiler is either seriously broken, or > configure: is too old to build Sage. > ----------------------------------------------------------------------------- > Checking whether SageMath should install SPKG gfortran... > checking the version of gfortran... 11.1.0 > configure: no suitable system package found for SPKG gfortran > ----------------------------------------------------------------------------- > [...] > ----------------------------------------------------------------------------- > Checking whether SageMath should install SPKG readline... > configure: readline has already been installed by SageMath > ----------------------------------------------------------------------------- > Checking whether SageMath should install SPKG fplll... > configure: fplll has already been installed by SageMath > ----------------------------------------------------------------------------- > Checking whether SageMath should install SPKG freetype... > checking whether any of gcc libpng is installed as or will be installed as > SPKG... no > checking for FREETYPE... yes > configure: will use system package and not install SPKG freetype > ----------------------------------------------------------------------------- > [...] > ----------------------------------------------------------------------------- > Checking whether SageMath should install SPKG python3... > checking whether any of bzip2 xz libffi is installed as or will be installed > as SPKG... no > checking for python3 >= 3.7.0, < 3.10.0 with modules sqlite3, ctypes, math, > hashlib, crypt, readline, socket, zlib, distutils.core... > checking ... whether /usr/local/bin/python3 is good... Traceback (most recent > call last): > File "<string>", line 1, in <module> > ImportError: > dlopen(/usr/local/Cellar/python@3.9/3.9.5/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/readline.cpython-39-darwin.so, > 2): Library not loaded: /usr/local/opt/readline/lib/libreadline.8.dylib > Referenced from: > /usr/local/Cellar/python@3.9/3.9.5/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/readline.cpython-39-darwin.so > Reason: image not found > no, the version is in the supported range but cannot import one of the > required modules: sqlite3, ctypes, math, hashlib, crypt, readline, socket, > zlib, distutils.core > checking ... whether /usr/bin/python3 is good... yes > checking for python3 >= 3.7.0, < 3.10.0 with modules sqlite3, ctypes, math, > hashlib, crypt, readline, socket, zlib, distutils.core... /usr/bin/python3 > configure: will use system package and not install SPKG python3 > checking whether /usr/bin/python3 is configured to build multiarch > extensions... no > checking whether "-march=native" works with the C/C++ compilers configured > for building extensions for /usr/bin/python3... yes > > [...] > > ----------------------------------------------------------------------------- > configure: > > notice: the following SPKGs did not find equivalent system packages: > > eclib fflas_ffpack gfortran giac gsl iml lcalc openblas r suitesparse > sympow _recommended cbc cmake coxeter3 gp2c igraph libsemigroups lrslib > ninja_build pandoc pari_elldata pari_galpol pari_nftables pari_seadata > perl_cpan_polymake_prereq perl_term_readline_gnu tox > > > > checking for the package system in use... homebrew > configure: > > hint: installing the following system packages, if not > already present, is recommended and may avoid having to > build them (though some may have to be built anyway): > > $ brew install gcc gsl openblas r suite-sparse > > > > Homebrew can issue suggestions regarding keg-only packages. > The following command is to automatically apply these suggestions > for packages relevant for Sage to make them available for the build. > Run it once to apply the suggestions for the current session. > Add it to your shell profile to apply them for all future sessions. > > > > $ source /Users/pascalweil/GitBox/sage/.homebrew-build-env > > configure: > > hint: installing the following system packages, if not > already present, may provide additional optional features: > > $ brew install ffmpeg imagemagick texinfo cbc cmake igraph ninja pandoc > tox > > > > Homebrew can issue suggestions regarding keg-only packages. > The following command is to automatically apply these suggestions > for packages relevant for Sage to make them available for the build. > Run it once to apply the suggestions for the current session. > Add it to your shell profile to apply them for all future sessions. > > > > $ source /Users/pascalweil/GitBox/sage/.homebrew-build-env > > configure: > > hint: After installation, re-run configure using: > > $ ./config.status --recheck && ./config.status > > > > As we can see above, `gfortran` was not found on the system, but gcc was > installed by brew. We double check that gcc is installed: > > $ brew install gcc > Updating Homebrew... > ==> Auto-updated Homebrew! > Updated 3 taps (homebrew/core, homebrew/cask and caskroom/cask). > ==> New Formulae > osinfo-db osinfo-db-tools > ==> Updated Formulae > Updated 5 formulae. > ==> Updated Casks > Updated 6 casks. > > Warning: gcc 11.1.0_1 is already installed and up-to-date. > To reinstall 11.1.0_1, run: > brew reinstall gcc > > Questions: > - How should he correctly install gfortran with homebrew? > - Why does source .homebrew-build-env does not fix the PATH of the correct > python3 : /usr/bin/python3 instead of /usr/local/bin/python3 ? > > Thank you again, > > Sébastien > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/9d1dc149-5ac1-4c41-8d8c-b314aec7b687n%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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