Thanks Dima and Samuel. I did as you suggested and I am a hour into the compile and no errors yet so it is looking good. brett
On Friday, February 26, 2021 at 4:24:59 AM UTC-6 Samuel Lelievre wrote: > Le jeudi 25 février 2021 à 23:20:16 UTC+1, brettpim a écrit : > >> I am having a similar problem. I have pulled the master branch from git >> and I when run >> >> # ./configure >> >> it finishes with >> >> configure: notice: the following SPKGs did not find equivalent system >> packages: boost cbc coxeter3 gp2c isl libnauty libsemigroups pari_elldata >> pari_galpol pari_nftables pari_seadata python3 tox >> checking for the package system in use... debian >> configure: hint: installing the following system packages is recommended >> and may avoid building some of the above SPKGs from source: >> configure: $ sudo apt-get update >> $ sudo apt-get install libboost-dev coinor-cbc coinor-libcbc-dev >> pari-gp2c libisl-dev libnauty-dev python3 libpython3-dev python3-distutils >> >> but all these APT packages are already installed: >> >> # apt-get install libboost-dev coinor-cbc coinor-libcbc-dev pari-gp2c >> libisl-dev libnauty-dev python3 libpython3-dev python3-distutils >> Reading package lists... Done >> Building dependency tree >> Reading state information... Done >> Note, selecting 'libnauty2-dev' instead of 'libnauty-dev' >> libboost-dev is already the newest version (1.71.0.0ubuntu2). >> libisl-dev is already the newest version (0.22.1-1). >> libpython3-dev is already the newest version (3.8.2-0ubuntu2). >> python3 is already the newest version (3.8.2-0ubuntu2). >> coinor-cbc is already the newest version (2.10.3+repack1-1build1). >> coinor-libcbc-dev is already the newest version (2.10.3+repack1-1build1). >> libnauty2-dev is already the newest version (2.6r10+ds-1ubuntu1). >> pari-gp2c is already the newest version (0.0.11pl2-3). >> python3-distutils is already the newest version (3.8.5-1~20.04.1). >> 0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded. >> >> I don;t know what I need to get ./configure to recognize my python3. The >> 'xz' package Matthias refers to is installed: >> >> configure:30241: checking for xz >= 4.999.0 >> configure:30320: result: /usr/bin/xz >> configure:30329: will use system package and not install SPKG xz >> >> config.log attached >> > > > In your `config.log`, the report for checking > whether to install the `python3` SPGK reads: > > ``` > ## -------------------------------------------------------- ## > ## Checking whether SageMath should install SPKG python3... ## > ## -------------------------------------------------------- ## > configure:30455: checking whether any of sqlite libpng bzip2 xz libffi is > installed as or will be installed as SPKG > configure:30459: result: yes; install python3 as well > configure:31094: no suitable system package found for SPKG python3 > ``` > > So the decision for `python3` depends, here, not on whether > a suitable system `python3` exists, but on the status for > `sqlite`, `libpng`, `bzip2`, `xz`, `libffi`. > > Here are the corresponding checks in `config.log`: > > ``` > ## ------------------------------------------------------- ## > ## Checking whether SageMath should install SPKG sqlite... ## > ## ------------------------------------------------------- ## > configure:30003: sqlite has already been installed by SageMath > ``` > > ``` > ## ------------------------------------------------------- ## > ## Checking whether SageMath should install SPKG libpng... ## > ## ------------------------------------------------------- ## > configure:14052: libpng has already been installed by SageMath > ``` > > ``` > ## ------------------------------------------------------ ## > ## Checking whether SageMath should install SPKG bzip2... ## > ## ------------------------------------------------------ ## > configure:14668: bzip2 has already been installed by SageMath > ``` > > ``` > ## --------------------------------------------------- ## > ## Checking whether SageMath should install SPKG xz... ## > ## --------------------------------------------------- ## > configure:30190: checking for lzma_raw_decoder in -llzma > configure:30215: g++ -std=gnu++11 -std=gnu++11 -o conftest -g -O2 > -Wl,-rpath-link,/home/brett/Projects/SAGE/sage/local/lib > -L/home/brett/Projects/SAGE/sage/local/lib > -Wl,-rpath,/home/brett/Projects/SAGE/sage/local/lib conftest.cpp -llzma > -lm >&5 > configure:30215: $? = 0 > configure:30224: result: yes > configure:30232: checking lzma.h usability > configure:30232: g++ -std=gnu++11 -std=gnu++11 -c -g -O2 conftest.cpp >&5 > configure:30232: $? = 0 > configure:30232: result: yes > configure:30232: checking lzma.h presence > configure:30232: g++ -std=gnu++11 -E -std=gnu++11 conftest.cpp > configure:30232: $? = 0 > configure:30232: result: yes > configure:30232: checking for lzma.h > configure:30232: result: yes > configure:30241: checking for xz >= 4.999.0 > configure:30320: result: /usr/bin/xz > configure:30329: will use system package and not install SPKG xz > ``` > > ``` > ## ------------------------------------------------------- ## > ## Checking whether SageMath should install SPKG libffi... ## > ## ------------------------------------------------------- ## > configure:23725: checking for LIBFFI > configure:23732: $PKG_CONFIG --exists --print-errors "libffi" > configure:23735: $? = 0 > configure:23749: $PKG_CONFIG --exists --print-errors "libffi" > configure:23752: $? = 0 > configure:23938: result: yes > configure:23946: will use system package and not install SPKG libffi > ``` > > The `configure` script concludes that it can use system packages > for `xz` and `libffi`; and that `sqlite`, `libpng` and `bzip2` > have already been installed by SageMath, so there is no point > in checking for the existence of corresponding system packages. > > The final recommendations emitted by `configure` are slightly off: > it recommends installing every package for which the decision > reached during the checks was not to use the sytem package. > But sometimes, what led to that decision was not the absence > of a suitable system package, but other factors. > > Improving that is tracked at > > - Sage Trac ticket 29586 > Improve configure's recommendations > https://trac.sagemath.org/ticket/29586 > > If you want Sage to use your system's Python3, maybe you can > uninstall the `sqlite`, `libpng` and `bzip2` SPKGs: > > ``` > $ make sqlite-clean > $ make libpng-clean > $ make bzip2-clean > ``` > > and run `configure` again. > > If you want to make sure to use as many system packages > as possible, you might want to uninstall more things with: > ``` > $ make distclean > ``` > > and run `configure` again. > > > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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