Hi thanks for the tips. So I have recompiled sage successfully
touch "/Users/pierre/local/sage-9.3.beta4/local/var/lib/sage/installed/sagelib-9.3.beta4" "/Users/pierre/local/sage-9.3.beta4/build/bin/sage-starts" Testing that Sage starts... [2020-12-16 01:46:39] SageMath version 9.3.beta4, Release Date: 2020-12-14 This looks like the first time you are running Sage. Cleaning up, do not interrupt this. Done cleaning. Yes, Sage starts. In a terminal window, I started sage. Did 1+1 test. I quit sage, and launch it again, and sage crashes ImportError: dlopen(/Users/pierre/local/lib/python3.9/site-packages/sage/matrix/matrix_mpolynomial_dense.cpython-39-darwin.so, 2): Library not loaded: /Users/pierre/local/lib/libSingular-4.1.1.dylib Referenced from: /Users/pierre/local/lib/python3.9/site-packages/sage/matrix/matrix_mpolynomial_dense.cpython-39-darwin.so Reason: image not found I'm sending a crash report. Pierre Le mardi 15 décembre 2020 à 21:31:23 UTC+1, zsc...@gmail.com a écrit : > You can safely ignore that message. I think there is some ongoing work > being done on changing how sage handles recommended packages and that > message is a byproduct. If it's really bothering you then you can just > type: > > make _recommended > > and I think that message should disappear. > > On Tuesday, December 15, 2020 at 3:24:12 PM UTC-5 vanhove...@gmail.com > wrote: > >> hi >> >> I have cleanup my /usr/local - reinstalled a fresh brew and Xcode. >> I have run ./configure in sage-9.3-beta4 that complained about missing >> homebrew package. I have installed them. >> % brew list >> aom fribidi harfbuzz libheif little-cms2 pandoc srt >> arb gcc icu4c libidn2 lzo pcre suite-sparse >> bdw-gc gd igraph liblqr metis pcre2 tbb >> boost gdbm ilmbase libmpc mpfi pixman tesseract >> c-ares gettext imagemagick libogg mpfr pkg-config texinfo >> cairo ghostscript isl libomp nauty ppl theora >> cmake giflib jemalloc libpng nettle python@3.9 tox >> coreutils glib jpeg libsamplerate nghttp2 r unbound >> dav1d glpk lame libsndfile ninja rav1e webp >> docbook gmp leptonica libsoxr ntl readline x264 >> docbook-xsl gnu-getopt libass libtasn1 openblas rtmpdump x265 >> ffmpeg gnutls libatomic_ops libtiff opencore-amr rubberband xmlto >> flac gobject-introspection libbluray libtool openexr sdl2 xvid >> flint gpatch libde265 libunistring openjpeg shared-mime-info xz >> fontconfig graphite2 libev libvidstab openssl@1.1 snappy zeromq >> freetype gsl libevent libvorbis opus speex >> frei0r guile libffi libvpx p11-kit sqlite >> >> my homebrew setup is clean >> >> % brew doctor >> Your system is ready to brew. >> >> then boostrapping, sourcing brew environnement and rerun configure in >> sage, I still get the message >> >> $ brew install pandoc ffmpeg imagemagick texinfo >> >> >> Pierre >> >> Le mardi 15 décembre 2020 à 19:57:40 UTC+1, zsc...@gmail.com a écrit : >> >>> Have you tried running "brew doctor"? Homebrew should complain loudly >>> about all of the header files in /usr/local/include which could cause >>> conflicts. For example, if I touch stdio.h in my /usr/local/include and >>> then I run brew doctor I get: >>> >>> "Warning: Unbrewed header files were found in /usr/local/include. >>> If you didn't put them there on purpose they could cause problems when >>> building Homebrew formulae, and may need to be deleted. >>> >>> Unexpected header files: >>> /usr/local/include/stdio.h" >>> >>> I would start with running brew doctor and trying to fix the >>> recommendations there. >>> >>> On Tuesday, December 15, 2020 at 8:43:28 AM UTC-5 dim...@gmail.com >>> wrote: >>> >>>> On Tue, Dec 15, 2020 at 1:23 PM Pierre Vanhove <vanhove...@gmail.com> >>>> wrote: >>>> > >>>> > hi >>>> > >>>> > >>>> > What did one do yesterday just after 17:00 on the machine? >>>> > Updated Homebrew? Installed macOS command line tools? >>>> > >>>> > >>>> > yes I updated homebrew, but with a bad internet connection and the >>>> connection broke. I had to redo it. >>>> > >>>> > But curiously, I have deleted the sage-9.2 folder downloaded a >>>> sage-9.3-beta4 and then worked from the new folder. >>>> > >>>> > I will see if using the backup from my time machine solves the >>>> problem by going back in time. >>>> >>>> I'd suggest to install the full XCode. The fact that homebrew >>>> apparently created that link indicates >>>> that not all is well; I'd also erase the whole /usr/local and >>>> reinstall Homebrew from scratch, >>>> after XCode is installed. >>>> >>>> macOS, Homebrew, XCode are moving targets, it's hard to keep up with >>>> them. >>>> >>>> > >>>> > Now that they have put sirocco on cocacl, I will work with that. And >>>> I will leave most of the sage coding to Andrey Novoseltsev then since >>>> locally I cannot work... >>>> > >>>> > best, Pierre >>>> > >>>> > ======================================================== >>>> > Pierre Vanhove (vanhove...@gmail.com) | web: >>>> http://sites.google.com/site/vanhovepierre/ >>>> > >>>> > >>>> > >>>> > >>>> > >>>> > >>>> > -- >>>> > You received this message because you are subscribed to the Google >>>> Groups "sage-devel" group. >>>> > To unsubscribe from this group and stop receiving emails from it, >>>> send an email to sage-devel+...@googlegroups.com. >>>> > To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-devel/95B792F4-B444-4DBB-8E4B-2846A020C683%40gmail.com. >>>> >>>> >>>> >>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/b05d02fb-d865-4144-bf78-0223f9637b43n%40googlegroups.com.
