Hello, Sage 9.2 fails to build because of cysignals on macos 10.15.7
Error installing package cysignals-1.10.2 I had been able to build Sage 9.2 from source when it came out. Then I tried to install the optional package sirocco, the -i optional failed, so I used -p and tried to rebuild sage from source. Now, I'm getting this compilation failure. What should I do? Thank you for your help, Pierre Vanhove -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/36288985-134c-4887-894d-d64c3b525fafn%40googlegroups.com.
Found local metadata for cysignals-1.10.2 Using cached file /Users/pierre/local/sage-9.2/upstream/cysignals-1.10.2.tar.gz cysignals-1.10.2 ==================================================== Setting up build directory for cysignals-1.10.2 Finished extraction No patch files found in ../patches **************************************************** Host system: Darwin macbookpro-vanhove.dyndns.cern.ch 19.6.0 Darwin Kernel Version 19.6.0: Thu Oct 29 22:56:45 PDT 2020; root:xnu-6153.141.2.2~1/RELEASE_X86_64 x86_64 **************************************************** C compiler: gcc C compiler version: Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/c++/4.2.1 Apple clang version 12.0.0 (clang-1200.0.32.27) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin **************************************************** Package 'cysignals' is currently not installed No legacy uninstaller found for 'cysignals'; nothing to do Configuring cysignals-1.10.2 configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether gcc accepts -g... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/local/bin/ggrep checking for egrep... /usr/local/bin/ggrep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/prctl.h usability... no checking sys/prctl.h presence... no checking for sys/prctl.h... no checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for fork... yes checking for kill... yes checking for sigprocmask... yes checking for sigaltstack... yes checking for backtrace... yes checking for library containing pari_init... -lpari checking whether PARI_SIGINT_block is declared... yes checking for emms instruction... yes checking whether setjmp() saves the signal mask... yes checking for GNU libc... no checking for _Atomic in C code... yes checking for _Atomic in C++ code... yes checking for std::atomic... yes configure: creating ./config.status config.status: creating src/cysignals/signals.pxd config.status: creating src/config.h config.status: creating src/cysignals/cysignals_config.h configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking Installing cysignals-1.10.2 Ignoring indexes: https://pypi.org/simple Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-ephem-wheel-cache-szlheziw Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-usbt5wi4 Initialized build tracking at /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-usbt5wi4 Created build tracker: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-usbt5wi4 Entered build tracker: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-usbt5wi4 Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-wheel-dsj28z3h Processing /Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-yz8dr29b Added file:///Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src to build tracker '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-usbt5wi4' Running setup.py (path:/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-yz8dr29b/setup.py) egg_info for package from file:///Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v Running command python setup.py egg_info running egg_info creating /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v/cysignals.egg-info writing /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v/cysignals.egg-info/PKG-INFO writing dependency_links to /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v/cysignals.egg-info/dependency_links.txt writing requirements to /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v/cysignals.egg-info/requires.txt writing top-level names to /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v/cysignals.egg-info/top_level.txt writing manifest file '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v/cysignals.egg-info/SOURCES.txt' /Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/setuptools/lib2to3_ex.py:13: PendingDeprecationWarning: lib2to3 package is deprecated and may not be able to parse Python 3.10+ from lib2to3.refactor import RefactoringTool, get_fixers_from_package reading manifest file '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v/cysignals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'build' no previously-included directories found matching 'dist' no previously-included directories found matching 'tmp' no previously-included directories found matching '.*' no previously-included directories found matching 'example/.*' writing manifest file '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-63fxxs0v/cysignals.egg-info/SOURCES.txt' Source in /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-yz8dr29b has version 1.10.2, which satisfies requirement cysignals==1.10.2 from file:///Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src Removed cysignals==1.10.2 from file:///Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src from build tracker '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-usbt5wi4' Building wheels for collected packages: cysignals Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-wheel-tlj3v_xe Building wheel for cysignals (setup.py): started Destination directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-wheel-tlj3v_xe Running command /Users/pierre/local/sage-9.2/local/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-yz8dr29b/setup.py'"'"'; __file__='"'"'/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-yz8dr29b/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-wheel-tlj3v_xe running bdist_wheel running build Compiling src/cysignals/signals.pyx because it changed. Compiling src/cysignals/pysignals.pyx because it changed. Compiling src/cysignals/alarm.pyx because it changed. Compiling src/cysignals/pselect.pyx because it changed. Compiling src/cysignals/tests.pyx because it changed. [1/5] Cythonizing src/cysignals/alarm.pyx [2/5] Cythonizing src/cysignals/pselect.pyx [3/5] Cythonizing src/cysignals/pysignals.pyx [4/5] Cythonizing src/cysignals/signals.pyx [5/5] Cythonizing src/cysignals/tests.pyx running build_py /Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/setuptools/lib2to3_ex.py:13: PendingDeprecationWarning: lib2to3 package is deprecated and may not be able to parse Python 3.10+ from lib2to3.refactor import RefactoringTool, get_fixers_from_package creating build/lib.macosx-10.15-x86_64-3.9 creating build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/__init__.py -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/signals.pxi -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/memory.pxi -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/memory.pxd -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/pysignals.pxd -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/signals.pxd -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/cysignals_config.h -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/macros.h -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/struct_signals.h -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/pxi_warning.h -> build/lib.macosx-10.15-x86_64-3.9/cysignals running build_ext building 'cysignals.signals' extension creating build/temp.macosx-10.15-x86_64-3.9 creating build/temp.macosx-10.15-x86_64-3.9/build creating build/temp.macosx-10.15-x86_64-3.9/build/src creating build/temp.macosx-10.15-x86_64-3.9/build/src/cysignals gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/usr/local/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -Wp,-U_FORTIFY_SOURCE -DCYTHON_CLINE_IN_TRACEBACK=0 -U_FORTIFY_SOURCE -Isrc/cysignals -Isrc -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/Users/pierre/local/sage-9.2/local/include -I/usr/local/Cellar/python@3.9/3.9.1/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c build/src/cysignals/signals.c -o build/temp.macosx-10.15-x86_64-3.9/build/src/cysignals/signals.o -pthread In file included from build/src/cysignals/signals.c:1570: build/src/cysignals/implementation.c:516:13: warning: unused function 'print_enhanced_backtrace' [-Wunused-function] static void print_enhanced_backtrace(void) ^ 1 warning generated. gcc -bundle -undefined dynamic_lookup -L/usr/local/lib -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk -L/Users/pierre/local/sage-9.2/local/lib -Wl,-rpath,/Users/pierre/local/sage-9.2/local/lib -Wp,-U_FORTIFY_SOURCE build/temp.macosx-10.15-x86_64-3.9/build/src/cysignals/signals.o -L/usr/local/lib -L/usr/local/opt/openssl@1.1/lib -L/usr/local/opt/sqlite/lib -o build/lib.macosx-10.15-x86_64-3.9/cysignals/signals.cpython-39-darwin.so -lpari -pthread ld: illegal thread local variable reference to regular symbol _PARI_SIGINT_pending for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) error: command '/usr/bin/gcc' failed with exit code 1 Building wheel for cysignals (setup.py): finished with status 'error' ERROR: Failed building wheel for cysignals Running setup.py clean for cysignals Running command /Users/pierre/local/sage-9.2/local/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-yz8dr29b/setup.py'"'"'; __file__='"'"'/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-yz8dr29b/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all running clean removing 'build/temp.macosx-10.15-x86_64-3.9' (and everything under it) removing 'build/lib.macosx-10.15-x86_64-3.9' (and everything under it) 'build/bdist.macosx-10.15-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it Failed to build cysignals ERROR: Failed to build one or more wheels Exception information: Traceback (most recent call last): File "/Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 228, in _main status = self.run(options, args) File "/Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 182, in wrapper return func(self, options, args) File "/Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 184, in run raise CommandError( pip._internal.exceptions.CommandError: Failed to build one or more wheels Removed build tracker: '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-usbt5wi4' ******************************************************************************** Error building a wheel for cysignals-1.10.2 ******************************************************************************** real 0m16.593s user 0m8.353s sys 0m4.121s ************************************************************************ Error installing package cysignals-1.10.2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /Users/pierre/local/sage-9.2/logs/pkgs/cysignals-1.10.2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2' && '/Users/pierre/local/sage-9.2/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cysignals-1.10.2 Using cached file /Users/pierre/local/sage-9.2/upstream/cysignals-1.10.2.tar.gz cysignals-1.10.2 ==================================================== Setting up build directory for cysignals-1.10.2 Finished extraction No patch files found in ../patches **************************************************** Host system: Darwin macbookpro-vanhove.dyndns.cern.ch 19.6.0 Darwin Kernel Version 19.6.0: Thu Oct 29 22:56:45 PDT 2020; root:xnu-6153.141.2.2~1/RELEASE_X86_64 x86_64 **************************************************** C compiler: gcc C compiler version: Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/c++/4.2.1 Apple clang version 12.0.0 (clang-1200.0.32.27) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin **************************************************** Package 'cysignals' is currently not installed No legacy uninstaller found for 'cysignals'; nothing to do Configuring cysignals-1.10.2 configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether gcc accepts -g... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/local/bin/ggrep checking for egrep... /usr/local/bin/ggrep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/prctl.h usability... no checking sys/prctl.h presence... no checking for sys/prctl.h... no checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for fork... yes checking for kill... yes checking for sigprocmask... yes checking for sigaltstack... yes checking for backtrace... yes checking for library containing pari_init... -lpari checking whether PARI_SIGINT_block is declared... yes checking for emms instruction... yes checking whether setjmp() saves the signal mask... yes checking for GNU libc... no checking for _Atomic in C code... yes checking for _Atomic in C++ code... yes checking for std::atomic... yes configure: creating ./config.status config.status: creating src/cysignals/signals.pxd config.status: creating src/config.h config.status: creating src/cysignals/cysignals_config.h configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking Installing cysignals-1.10.2 Ignoring indexes: https://pypi.org/simple Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-ephem-wheel-cache-q0gwyk4k Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-z78ie290 Initialized build tracking at /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-z78ie290 Created build tracker: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-z78ie290 Entered build tracker: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-z78ie290 Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-wheel-2n_u_buv Processing /Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-4xypaene Added file:///Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src to build tracker '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-z78ie290' Running setup.py (path:/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-4xypaene/setup.py) egg_info for package from file:///Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a Running command python setup.py egg_info running egg_info creating /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a/cysignals.egg-info writing /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a/cysignals.egg-info/PKG-INFO writing dependency_links to /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a/cysignals.egg-info/dependency_links.txt writing requirements to /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a/cysignals.egg-info/requires.txt writing top-level names to /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a/cysignals.egg-info/top_level.txt writing manifest file '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a/cysignals.egg-info/SOURCES.txt' /Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/setuptools/lib2to3_ex.py:13: PendingDeprecationWarning: lib2to3 package is deprecated and may not be able to parse Python 3.10+ from lib2to3.refactor import RefactoringTool, get_fixers_from_package reading manifest file '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a/cysignals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'build' no previously-included directories found matching 'dist' no previously-included directories found matching 'tmp' no previously-included directories found matching '.*' no previously-included directories found matching 'example/.*' writing manifest file '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-pip-egg-info-sxsid90a/cysignals.egg-info/SOURCES.txt' Source in /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-4xypaene has version 1.10.2, which satisfies requirement cysignals==1.10.2 from file:///Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src Removed cysignals==1.10.2 from file:///Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2/src from build tracker '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-z78ie290' Building wheels for collected packages: cysignals Created temporary directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-wheel-7lq5sf1u Building wheel for cysignals (setup.py): started Destination directory: /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-wheel-7lq5sf1u Running command /Users/pierre/local/sage-9.2/local/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-4xypaene/setup.py'"'"'; __file__='"'"'/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-4xypaene/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-wheel-7lq5sf1u running bdist_wheel running build Compiling src/cysignals/signals.pyx because it changed. Compiling src/cysignals/pysignals.pyx because it changed. Compiling src/cysignals/alarm.pyx because it changed. Compiling src/cysignals/pselect.pyx because it changed. Compiling src/cysignals/tests.pyx because it changed. [1/5] Cythonizing src/cysignals/alarm.pyx [2/5] Cythonizing src/cysignals/pselect.pyx [3/5] Cythonizing src/cysignals/pysignals.pyx [4/5] Cythonizing src/cysignals/signals.pyx [5/5] Cythonizing src/cysignals/tests.pyx running build_py /Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/setuptools/lib2to3_ex.py:13: PendingDeprecationWarning: lib2to3 package is deprecated and may not be able to parse Python 3.10+ from lib2to3.refactor import RefactoringTool, get_fixers_from_package creating build/lib.macosx-10.15-x86_64-3.9 creating build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/__init__.py -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/signals.pxi -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/memory.pxi -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/memory.pxd -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/pysignals.pxd -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/signals.pxd -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/cysignals_config.h -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/macros.h -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/struct_signals.h -> build/lib.macosx-10.15-x86_64-3.9/cysignals copying src/cysignals/pxi_warning.h -> build/lib.macosx-10.15-x86_64-3.9/cysignals running build_ext building 'cysignals.signals' extension creating build/temp.macosx-10.15-x86_64-3.9 creating build/temp.macosx-10.15-x86_64-3.9/build creating build/temp.macosx-10.15-x86_64-3.9/build/src creating build/temp.macosx-10.15-x86_64-3.9/build/src/cysignals gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/usr/local/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -Wp,-U_FORTIFY_SOURCE -DCYTHON_CLINE_IN_TRACEBACK=0 -U_FORTIFY_SOURCE -Isrc/cysignals -Isrc -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/Users/pierre/local/sage-9.2/local/include -I/usr/local/Cellar/python@3.9/3.9.1/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c build/src/cysignals/signals.c -o build/temp.macosx-10.15-x86_64-3.9/build/src/cysignals/signals.o -pthread In file included from build/src/cysignals/signals.c:1570: build/src/cysignals/implementation.c:516:13: warning: unused function 'print_enhanced_backtrace' [-Wunused-function] static void print_enhanced_backtrace(void) ^ 1 warning generated. gcc -bundle -undefined dynamic_lookup -L/usr/local/lib -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk -L/Users/pierre/local/sage-9.2/local/lib -Wl,-rpath,/Users/pierre/local/sage-9.2/local/lib -Wp,-U_FORTIFY_SOURCE build/temp.macosx-10.15-x86_64-3.9/build/src/cysignals/signals.o -L/usr/local/lib -L/usr/local/opt/openssl@1.1/lib -L/usr/local/opt/sqlite/lib -o build/lib.macosx-10.15-x86_64-3.9/cysignals/signals.cpython-39-darwin.so -lpari -pthread ld: illegal thread local variable reference to regular symbol _PARI_SIGINT_block for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) error: command '/usr/bin/gcc' failed with exit code 1 Building wheel for cysignals (setup.py): finished with status 'error' ERROR: Failed building wheel for cysignals Running setup.py clean for cysignals Running command /Users/pierre/local/sage-9.2/local/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-4xypaene/setup.py'"'"'; __file__='"'"'/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-build-4xypaene/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all running clean removing 'build/temp.macosx-10.15-x86_64-3.9' (and everything under it) removing 'build/lib.macosx-10.15-x86_64-3.9' (and everything under it) 'build/bdist.macosx-10.15-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it Failed to build cysignals ERROR: Failed to build one or more wheels Exception information: Traceback (most recent call last): File "/Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 228, in _main status = self.run(options, args) File "/Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 182, in wrapper return func(self, options, args) File "/Users/pierre/local/sage-9.2/local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 184, in run raise CommandError( pip._internal.exceptions.CommandError: Failed to build one or more wheels Removed build tracker: '/private/var/folders/fj/hhdkjbx57yb2kx64bwgym4340000gq/T/pip-req-tracker-z78ie290' ******************************************************************************** Error building a wheel for cysignals-1.10.2 ******************************************************************************** real 0m11.191s user 0m6.123s sys 0m3.097s ************************************************************************ Error installing package cysignals-1.10.2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /Users/pierre/local/sage-9.2/logs/pkgs/cysignals-1.10.2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/Users/pierre/local/sage-9.2/local/var/tmp/sage/build/cysignals-1.10.2' && '/Users/pierre/local/sage-9.2/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
