Another option is to use git worktree to create a second copy of the source 
tree in the repository.

$ git worktree add my_worktree
$ cd my_worktree/
$ ln -s ../upstream/ .

This creates a subdirectory with a copy of all source files, where one can 
merge the branches without touching the main tree. The last command is 
useful in case one decides to build a second copy of sage in the 
subdirectory.

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